Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PDDC1 Gene 0 57.19 82.85 117.46 120.87 52.17 116.26 58.31 154.49 44.87 163.04 100.71 39.49 41.37 123.41 142.44 144.82 79.27 146.42 122.09 79.43 129.77 62.25 106.15 2 479959 Transcript 1 7.45 15.59 57.93 31.20 4.55 24.98 13.05 53.57 13.81 55.11 27.11 5.79 2.00 45.17 39.26 35.82 17.99 57.47 25.22 19.29 34.18 17.40 20.32 3 465313 Transcript 1 428.74 439.36 2838.18 2701.35 264.64 253.15 495.00 3015.66 2676.25 2676.46 182.31 29.26 44.48 53.86 108.04 530.63 340.95 2526.36 314.03 416.77 141.22 196.16 378.76 4 442059 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 397472 Transcript 0 2.93 3.26 12.33 8.02 1.74 0.00 0.86 6.51 0.00 4.37 5.16 0.00 0.00 1.12 2.23 0.00 2.38 0.00 0.00 0.00 3.03 0.00 0.00 6 354286 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 319863 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 IG32 Intergenic 0 5.97 7.05 17.97 10.68 10.61 25.59 4.55 38.74 13.84 27.81 12.83 4.52 3.03 28.28 21.94 24.27 18.13 22.53 12.91 16.44 14.11 5.14 11.48 9 IG32_AR3 ActiveIntergenicRegion 0 9.52 10.73 28.05 18.65 12.44 33.49 5.64 63.79 23.89 43.05 17.52 7.58 4.10 41.24 33.97 35.04 25.61 36.33 20.73 28.16 22.65 7.48 13.98 10 IG32_SR2 SilentIntergenicRegion 0 3.54 7.88 15.60 6.04 17.84 33.81 7.15 28.92 7.83 21.49 11.01 4.60 5.24 25.90 19.87 25.19 18.12 14.03 10.41 9.69 8.31 4.94 13.68 11 IG32_AR1 ActiveIntergenicRegion 0 2.35 1.43 5.15 1.64 4.85 11.20 1.87 8.28 2.59 10.15 7.77 0.00 0.39 12.13 6.26 9.19 8.15 7.51 3.21 3.15 5.27 2.10 7.69 12 ER1a ExonRegion 0 0.00 1.74 0.79 0.49 0.19 5.76 1.13 0.12 0.00 0.33 0.83 0.00 0.00 0.93 2.90 0.85 0.00 4.49 0.23 1.52 1.42 0.00 1.89 13 ER1b ExonRegion 0 0.00 8.13 2.45 1.36 2.68 20.17 5.30 1.73 0.00 2.29 7.73 0.00 0.00 8.12 14.51 5.94 0.00 7.39 3.19 4.26 2.20 0.00 5.87 14 ER1c ExonRegion 0 0.00 8.13 2.45 1.82 2.68 20.17 5.30 1.73 0.00 2.29 7.73 0.00 4.69 8.12 17.41 5.94 0.00 8.01 4.25 4.26 2.20 0.00 5.87 15 ER1d ExonRegion 1 61.15 76.87 53.34 32.50 42.84 222.52 76.46 48.42 12.92 74.78 49.71 0.41 4.08 101.75 239.98 199.41 46.99 106.50 180.74 77.30 106.50 51.08 241.50 16 E1a_E2a KnownJunction 0 7.19 3.09 44.06 18.71 7.81 9.77 1.81 43.33 8.62 60.41 11.21 16.81 21.26 18.60 28.18 38.54 4.02 33.87 48.00 26.91 19.52 10.78 18.78 17 ER2a ExonRegion 1 13.00 10.04 76.75 28.21 4.76 14.91 6.31 68.91 12.22 94.11 75.81 6.86 11.63 51.78 70.12 38.33 41.80 34.41 51.67 41.36 109.84 16.21 19.79 18 E2a_E3a KnownJunction 1 24.08 17.76 148.72 53.94 8.66 16.41 11.66 121.37 30.64 199.80 176.62 5.70 13.47 96.65 89.75 29.14 78.73 76.94 82.83 78.87 246.00 32.27 14.68 19 ER3a ExonRegion 1 12.32 29.10 190.35 126.14 9.29 37.71 10.75 229.07 44.92 249.64 168.47 15.68 20.93 189.01 285.66 229.53 98.84 258.67 220.42 125.79 214.11 77.23 228.06 20 E3a_E4a KnownJunction 1 13.34 17.56 158.69 118.67 11.63 65.13 10.11 181.34 47.13 191.79 152.67 19.51 45.94 97.24 175.78 268.65 65.26 378.01 168.57 96.83 172.79 62.89 255.75 21 E3a_E5a KnownJunction 0 0.00 0.00 30.25 28.27 0.00 9.31 4.24 69.62 18.32 27.69 10.00 0.00 0.00 4.59 0.00 8.29 8.88 84.27 29.37 34.39 11.74 3.12 16.73 22 ER4a ExonRegion 1 9.01 29.26 152.74 86.20 33.47 130.78 53.47 139.86 39.34 190.89 146.31 22.25 32.44 124.18 157.34 110.00 72.56 174.48 114.47 70.35 205.03 47.48 81.49 23 E4a_E5a KnownJunction 1 16.89 87.81 128.50 93.86 32.60 164.28 87.27 148.69 25.58 192.22 159.99 25.96 6.82 182.77 153.16 135.95 79.76 161.38 77.37 80.86 226.54 45.31 88.52 24 ER5a ExonRegion 1 23.97 56.17 194.74 118.79 19.86 106.61 38.14 215.64 69.50 238.39 186.82 17.04 19.65 178.62 186.02 140.82 84.71 260.67 78.80 99.62 229.60 60.12 76.07 25 E5a_E6a KnownJunction 0 3.78 0.00 8.22 5.63 0.00 2.73 1.81 13.64 3.50 16.60 22.11 13.95 0.00 7.30 0.00 11.71 13.18 7.71 4.80 0.00 0.00 11.63 0.00 26 E5a_E6b KnownJunction 1 91.05 59.66 201.83 123.59 26.91 139.41 39.83 222.95 74.04 254.89 217.84 32.86 31.49 154.87 198.90 210.80 97.62 304.31 139.20 102.27 213.38 81.32 98.00 27 I5 Intron 0 4.55 2.77 7.73 14.71 2.50 3.16 7.69 10.53 3.96 19.00 12.62 2.37 2.00 17.16 13.67 17.27 13.73 31.36 12.80 14.96 13.75 16.74 5.48 28 I5_SR1 SilentIntronRegion 0 4.56 2.78 7.74 14.73 2.50 3.16 7.70 10.55 3.97 19.03 12.63 2.38 2.00 17.18 13.69 17.29 13.75 31.40 12.81 14.98 13.77 16.76 5.48 29 E6_Aa NovelBoundary 0 3.78 3.35 6.36 9.69 0.00 0.00 2.25 14.58 3.59 11.15 13.37 6.30 0.00 9.18 4.45 11.54 4.49 41.04 13.55 3.26 4.88 11.02 7.85 30 ER6a ExonRegion 0 5.85 6.49 13.25 7.43 4.46 9.56 5.33 14.98 7.70 27.12 27.06 7.01 0.89 16.78 11.74 26.04 17.84 25.65 14.56 4.96 12.17 11.66 6.15 31 E6_Ab KnownBoundary 0 5.85 12.23 15.35 9.29 8.57 13.63 8.08 21.15 7.15 29.52 24.53 12.00 0.00 17.31 18.54 36.14 21.22 50.99 21.65 9.14 7.48 10.29 8.45 32 ER6b ExonRegion 1 40.40 59.53 115.98 67.47 12.49 85.76 22.87 124.50 47.95 172.30 160.51 23.66 19.85 173.97 175.08 127.28 78.74 177.95 90.99 73.82 210.15 74.70 85.59 33 E6_Da KnownBoundary 0 30.45 53.48 168.77 112.07 11.80 91.25 21.15 141.95 50.06 204.50 128.19 23.71 33.60 193.30 132.52 135.61 54.89 183.47 75.30 73.50 203.74 72.07 95.95 34 E6_Db KnownBoundary 0 6.74 15.59 36.57 15.25 4.33 13.91 15.99 20.87 8.19 18.37 27.32 0.00 0.00 25.66 33.13 46.48 31.14 46.51 26.35 12.46 36.70 8.76 12.29 35 E6b_E6c KnownJunction 1 42.38 65.58 108.69 143.87 48.05 147.93 15.68 194.36 69.30 252.31 166.67 10.50 47.40 166.28 134.50 168.50 53.95 201.50 145.60 73.63 164.33 73.17 94.16 36 E6b_E6e KnownJunction 0 5.85 6.51 23.09 16.05 3.48 0.00 1.72 13.02 0.00 7.28 5.37 0.00 0.00 2.24 4.45 0.00 4.77 0.00 0.00 0.00 6.05 0.00 0.00 37 E6b_E6h NovelJunction 0 0.00 9.08 15.64 10.26 0.00 8.69 0.00 9.04 0.00 16.06 5.16 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 3.15 2.94 0.00 38 ER6c ExonRegion 1 36.07 72.36 146.99 114.08 32.78 123.71 20.74 169.82 60.83 213.23 169.13 15.33 33.61 214.93 157.39 180.06 80.18 209.80 113.35 83.07 217.07 79.61 97.64 39 ER6d ExonRegion 0 10.70 16.43 78.77 36.91 3.51 30.34 14.96 52.77 16.77 70.05 27.93 4.10 3.60 59.37 50.39 44.36 22.20 92.16 29.57 23.19 48.49 22.69 29.03 40 E6_Ac KnownBoundary 0 12.59 20.00 119.69 42.39 0.00 32.88 5.43 67.77 23.03 80.88 7.26 0.00 0.00 52.03 55.63 42.38 11.87 98.29 35.30 22.05 35.77 22.53 46.10 41 ER6e ExonRegion 1 26.96 53.18 191.72 151.73 30.13 88.85 21.11 241.75 71.83 287.28 143.99 19.42 29.15 203.45 204.58 176.53 104.65 206.27 105.92 98.10 213.26 66.56 81.72 42 E6_Dc KnownBoundary 1 28.82 55.65 156.35 92.46 17.15 105.39 41.25 159.37 34.49 177.83 67.49 0.00 6.82 86.11 112.86 101.94 43.38 112.88 53.65 52.48 93.28 77.03 48.49 43 E6c_E6d KnownJunction 0 20.08 13.22 25.84 44.75 35.99 39.69 12.94 80.26 30.18 107.04 81.39 12.45 8.28 72.46 58.10 149.36 71.06 143.30 85.93 39.82 155.56 54.19 43.02 44 E6c_E6e NovelJunction 0 0.00 0.00 0.00 3.43 0.00 0.00 2.25 15.48 0.00 4.54 15.32 0.00 0.00 2.06 0.00 3.93 0.00 0.00 0.00 0.00 0.00 2.82 0.00 45 ER6f ExonRegion 1 19.10 44.17 152.15 87.42 14.51 63.82 36.11 161.40 38.45 150.07 79.70 19.05 4.38 120.38 103.77 98.08 49.77 133.22 71.07 52.43 86.80 46.93 50.35 46 E6_Ad KnownBoundary 1 31.86 72.22 211.70 111.54 39.64 100.34 49.02 208.90 42.68 170.36 101.82 18.01 0.00 190.48 124.85 173.20 65.17 218.63 99.20 70.95 78.89 55.72 66.92 47 ER6g ExonRegion 1 42.66 96.45 205.00 200.49 42.72 124.60 39.96 221.64 71.13 292.36 150.21 22.79 14.11 209.22 183.58 204.97 128.50 279.65 130.74 85.59 221.89 74.99 96.53 48 E6_Dd KnownBoundary 1 66.60 105.11 256.79 274.32 80.81 244.23 82.67 316.19 80.27 371.31 201.16 31.66 25.32 213.20 204.22 274.54 156.71 323.96 206.31 105.78 289.49 63.38 151.26 49 E6d_E6e KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 3.94 5.38 9.05 10.90 0.00 0.00 7.06 18.54 3.93 13.65 5.10 0.00 0.00 2.78 0.00 0.00 50 ER6h ExonRegion 1 62.61 108.18 191.10 188.68 40.92 115.26 42.54 218.07 59.92 251.00 144.67 18.97 17.93 188.02 161.76 186.75 111.97 221.42 114.93 88.66 195.82 62.89 92.56 51 E6_Ae KnownBoundary 1 159.51 318.89 229.97 225.25 23.26 170.47 79.40 253.80 56.51 231.82 184.78 50.72 6.33 193.95 210.77 248.74 146.80 310.86 188.71 89.10 188.48 114.57 118.83 52 ER6i ExonRegion 1 72.82 190.24 246.94 235.23 86.48 268.94 107.00 292.31 80.40 321.20 226.24 21.18 25.68 240.31 217.46 222.59 148.85 285.57 138.87 99.80 219.56 98.32 103.97 53 E6_De KnownBoundary 1 52.82 172.01 306.23 298.53 225.21 391.31 176.03 307.85 113.37 321.99 214.37 18.91 31.98 222.32 229.56 230.54 121.08 306.55 147.39 110.58 247.54 56.21 91.85 54 E6e_E6h KnownJunction 0 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 1.45 4.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER6j ExonRegion 0 53.36 85.32 132.13 163.22 55.36 108.08 63.40 187.38 56.50 190.02 122.72 38.60 43.81 155.58 181.72 175.85 98.52 212.70 159.20 96.02 141.45 78.50 118.22 56 E6_Df KnownBoundary 1 802.88 912.86 887.37 1106.89 610.78 598.46 1050.50 969.96 938.01 892.52 260.07 328.01 389.75 357.17 384.33 943.34 694.72 1094.91 614.61 848.56 736.20 431.76 1028.28 57 E6f_E6g KnownJunction 1 857.49 878.73 5676.35 5400.65 529.29 506.30 990.00 6027.37 5347.11 5343.86 353.72 58.52 88.96 100.65 197.54 1057.33 668.26 5047.61 628.07 833.54 279.67 392.32 757.51 58 ER6k ExonRegion 0 58.94 93.08 76.35 97.94 68.54 142.37 81.86 108.59 34.20 127.41 67.94 56.73 60.92 88.43 110.80 151.50 78.29 87.51 139.67 71.18 99.44 64.19 147.92 59 E6_Dg KnownBoundary 0 126.54 77.55 52.30 52.71 77.67 56.84 109.52 92.21 47.31 57.11 56.65 54.92 40.42 28.67 44.75 100.32 65.08 113.87 153.51 128.60 82.91 46.97 114.13 60 E6g_E6f KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER6l ExonRegion 0 19.39 25.24 35.62 35.36 42.00 67.03 38.09 59.25 22.91 55.21 31.68 17.43 22.10 49.22 34.30 52.56 35.48 47.88 51.80 41.66 38.26 20.41 34.17 62 E6_Af KnownBoundary 0 6667.70 7323.43 11088.20 11340.25 6543.13 4658.51 7979.19 10891.23 10754.75 9726.07 2598.18 1561.26 1883.81 1272.65 2487.18 6881.61 5645.06 13979.49 5346.51 8434.96 4623.54 3227.80 7272.00 63 ER6m ExonRegion 0 40.95 36.68 25.41 32.76 30.11 40.24 36.84 61.85 30.18 42.21 20.85 25.62 33.36 29.92 56.53 71.22 33.46 53.60 59.80 44.24 33.09 31.88 42.80 64 E6_Ag KnownBoundary 0 527.65 366.45 703.85 867.12 407.64 243.67 433.37 932.34 741.95 721.65 163.78 183.51 195.93 159.22 253.42 366.23 187.94 749.02 270.41 249.15 178.60 168.45 237.22 65 ER6n ExonRegion 0 139.43 169.43 184.13 221.36 110.04 199.63 96.01 295.18 72.12 233.63 169.29 98.36 95.32 174.72 233.89 195.23 103.09 190.78 172.98 137.59 184.46 100.79 127.05 66 E6_Ah KnownBoundary 0 163.51 71.17 114.78 88.30 27.08 48.61 23.72 166.60 46.21 151.04 90.29 39.61 27.27 114.72 142.04 69.64 75.74 95.67 31.15 80.54 150.30 69.62 57.71 67 ER6o ExonRegion 0 137.49 67.65 78.89 87.39 20.67 39.12 26.50 122.97 29.78 105.60 60.00 25.38 13.42 79.44 109.92 50.84 36.63 84.31 67.02 69.61 85.82 38.33 41.81 68 ER6p ExonRegion 0 119.71 39.78 26.47 32.71 9.10 36.02 22.14 41.14 10.72 27.85 30.85 6.41 0.00 42.10 80.65 37.57 16.77 36.81 22.68 29.96 44.60 19.84 20.32 69 IG31 Intergenic 0 4.30 7.86 10.77 8.54 6.08 10.37 4.99 18.31 4.18 15.78 4.11 2.20 0.95 3.98 8.45 5.03 5.43 18.51 12.47 11.62 7.13 5.24 6.67 70 IG31_AR2 ActiveIntergenicRegion 0 6.68 9.47 10.71 8.31 11.79 15.34 8.38 24.78 4.60 20.00 5.65 4.01 0.79 4.61 6.49 4.53 2.64 22.92 14.21 15.79 6.93 6.72 8.69 71 IG31_SR1 SilentIntergenicRegion 0 2.90 7.66 11.46 9.04 3.48 7.16 3.63 13.92 2.83 9.48 2.67 0.16 0.91 3.71 6.90 4.77 6.64 15.80 9.34 8.09 6.29 5.07 4.64 72 IG31_AR1 ActiveIntergenicRegion 0 3.97 6.66 9.91 8.11 4.25 10.09 3.66 18.22 5.64 20.46 4.64 3.29 1.15 3.76 12.45 5.87 6.41 18.12 15.15 12.54 8.50 4.08 7.55