Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DEAF1 Gene 0 40.69 91.23 169.22 144.69 25.99 271.85 47.62 221.85 86.75 222.28 152.52 24.33 29.36 96.47 123.87 87.31 57.89 237.14 129.38 179.32 140.24 58.75 59.66 2 388804 Transcript 0 12.15 20.62 8.39 8.00 4.40 14.99 12.25 12.41 0.50 6.39 4.23 0.98 3.18 4.30 3.28 8.71 1.79 7.98 12.46 19.83 6.15 2.80 7.32 3 382409 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 338675 Transcript 0 0.00 0.00 81.21 69.90 0.00 0.00 0.00 101.86 32.67 92.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 104.36 0.00 0.00 0.00 0.00 0.00 5 359958 Transcript 0 3.19 2.70 0.00 2.66 3.48 66.89 9.45 22.39 3.76 19.64 14.11 0.00 0.00 3.00 0.00 7.01 3.83 24.21 15.44 11.31 30.89 0.00 0.00 6 ER1a ExonRegion 0 2.07 1.16 2.73 1.23 0.39 2.80 1.05 1.33 1.54 4.84 3.99 0.79 0.28 6.09 5.41 4.76 5.86 8.06 1.46 5.33 23.75 2.58 5.58 7 E1_Ab KnownBoundary 0 6.89 3.03 4.46 0.00 0.00 12.83 3.97 9.36 1.59 12.06 9.37 0.00 0.00 14.13 4.45 23.93 0.00 26.65 0.00 6.46 64.93 2.51 15.19 8 ER1b ExonRegion 0 1.68 10.12 2.90 1.36 2.25 58.14 15.05 2.99 1.24 6.36 27.32 1.77 4.48 10.08 6.07 27.36 15.53 11.97 43.07 12.48 71.77 1.28 27.43 9 E1_Da KnownBoundary 0 0.00 14.34 1.74 1.50 3.82 146.45 21.82 6.61 0.00 11.74 44.54 6.30 0.00 2.24 4.45 32.04 15.33 15.09 35.30 15.34 67.71 2.88 24.84 10 E1a_E1c KnownJunction 0 3.19 2.70 0.00 2.66 3.48 66.89 9.45 22.39 3.76 19.64 14.11 0.00 0.00 3.00 0.00 7.01 3.83 24.21 15.44 11.31 30.89 0.00 0.00 11 ER1c ExonRegion 0 0.00 4.97 0.83 0.67 0.87 19.45 1.35 1.09 0.17 0.83 9.17 2.42 0.00 3.21 3.85 7.88 5.76 1.68 11.19 2.28 12.86 1.99 8.61 12 E1_Ac KnownBoundary 0 0.00 3.09 0.00 0.00 0.00 0.00 0.00 3.49 1.48 1.32 2.68 0.00 0.00 2.47 0.00 0.00 4.58 0.00 0.00 0.00 3.03 2.33 4.01 13 ER1d ExonRegion 0 3.98 13.65 35.98 22.08 2.72 34.70 5.65 55.32 22.12 72.88 83.10 8.66 6.74 38.46 49.68 35.01 37.56 74.16 44.28 78.35 92.37 14.77 27.39 14 E1b_E2a KnownJunction 1 17.93 46.77 130.04 89.50 3.23 111.58 20.45 169.55 66.61 198.00 128.40 0.00 18.67 62.16 83.69 77.33 52.17 320.68 94.59 225.05 135.79 30.68 65.13 15 ER2a ExonRegion 0 25.64 71.01 189.07 129.39 12.15 325.95 42.11 213.43 100.13 274.15 197.53 16.08 34.65 121.15 138.16 73.91 71.58 297.53 144.87 234.00 166.36 67.35 51.12 16 E2a_E3a KnownJunction 0 37.34 148.92 268.47 241.53 32.34 783.47 106.34 373.77 173.46 426.16 326.50 25.36 51.78 188.83 165.03 93.82 88.55 423.49 178.26 273.25 277.20 112.55 71.19 17 E3_Aa NovelBoundary 0 20.15 3.16 19.60 17.05 0.00 16.98 6.36 20.82 10.07 11.77 5.05 0.00 0.00 7.06 4.45 4.36 11.97 20.06 0.00 9.08 3.15 0.00 0.00 18 ER3a ExonRegion 0 49.64 106.23 211.16 191.88 20.03 450.49 75.13 258.71 125.60 330.01 251.56 33.44 56.21 165.55 160.75 123.87 93.62 279.62 162.16 296.12 200.67 80.90 77.84 19 E3a_E4a KnownJunction 0 37.41 145.63 221.75 177.43 21.48 262.97 42.31 261.52 139.18 320.38 243.06 56.27 39.61 176.29 226.34 96.13 76.67 382.45 246.41 249.21 230.92 107.22 95.18 20 ER4a ExonRegion 0 51.06 191.38 243.76 202.16 43.60 511.34 94.40 362.74 145.33 371.72 285.74 64.68 57.24 191.61 195.97 158.58 110.51 473.11 228.15 294.72 240.72 95.09 101.58 21 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E4b_E5a KnownJunction 1 32.23 221.74 236.95 243.83 64.77 630.60 100.82 380.63 158.19 392.88 232.43 18.01 116.06 159.22 189.75 114.59 68.82 417.06 114.26 253.82 172.36 83.28 93.30 23 ER4b ExonRegion 1 31.75 193.19 224.24 215.34 61.54 566.64 94.00 330.13 146.98 347.51 233.88 30.31 89.11 154.29 150.87 124.83 75.92 412.05 152.90 251.06 220.37 89.59 105.72 24 ER5a ExonRegion 0 27.95 198.20 256.67 233.58 71.63 498.70 90.47 376.18 160.12 379.71 238.94 40.52 59.65 158.79 141.19 123.84 86.08 423.94 158.04 273.27 227.49 90.39 103.69 25 E5_Da KnownBoundary 0 15.11 132.48 128.68 105.68 61.55 252.30 51.76 181.96 86.23 186.31 138.03 31.21 19.32 72.11 47.59 65.71 44.23 216.18 99.30 171.55 147.28 56.46 71.79 26 E5a_E5b KnownJunction 0 0.00 0.00 162.41 139.81 0.00 0.00 0.00 203.73 65.33 185.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 208.72 0.00 0.00 0.00 0.00 0.00 27 E5_Ab KnownBoundary 0 34.01 119.32 180.09 175.20 14.94 213.17 34.98 235.31 91.67 234.34 155.20 6.15 26.95 30.14 35.85 84.42 49.09 296.23 137.13 107.38 155.99 43.84 56.25 28 ER5b ExonRegion 0 35.63 221.32 311.04 276.67 72.69 478.32 98.86 424.34 181.77 434.10 290.26 49.07 48.46 154.56 128.62 137.21 112.78 489.04 228.28 289.36 289.05 100.70 119.42 29 ER5c ExonRegion 0 61.82 187.11 359.41 347.48 54.22 512.83 106.66 476.69 217.39 484.65 330.26 71.64 56.77 212.18 232.92 229.76 117.65 637.20 451.48 409.76 301.00 160.98 168.07 30 E5b_E6a KnownJunction 0 85.05 226.67 419.29 407.64 54.92 692.84 108.82 579.27 259.46 549.73 362.72 138.80 82.14 212.43 293.84 180.29 113.79 704.79 394.27 442.69 307.53 151.25 115.58 31 ER6a ExonRegion 0 76.52 196.33 387.98 314.04 32.15 586.09 93.22 505.26 200.72 484.24 383.94 93.74 97.71 171.62 251.35 172.74 107.38 554.16 214.19 394.45 281.37 112.04 110.97 32 E6a_E7a KnownJunction 1 75.35 229.24 387.95 294.67 26.66 658.60 92.34 497.94 153.18 500.38 269.70 105.18 106.49 195.07 200.51 176.19 38.52 469.34 96.38 398.91 236.67 102.87 122.67 33 E6a_E8a NovelJunction 0 0.00 2.76 0.00 9.29 0.00 15.62 1.63 13.51 3.10 2.50 7.79 0.00 0.00 0.00 5.69 4.36 0.00 3.69 9.60 14.32 0.00 2.27 3.16 34 E6a_E9a NovelJunction 0 0.00 2.76 3.90 8.09 3.40 5.17 9.23 2.14 4.95 4.65 7.69 0.00 0.00 0.00 4.45 0.00 0.00 0.00 4.80 2.43 0.00 0.00 0.00 35 ER7a ExonRegion 0 95.63 218.04 384.95 348.04 83.83 736.06 127.39 547.69 187.35 507.04 315.95 66.41 84.83 192.84 226.94 205.26 110.90 561.85 338.18 394.25 281.76 149.65 165.05 36 E7a_E8a KnownJunction 0 61.71 197.99 333.43 279.02 34.80 439.75 96.23 423.76 141.81 401.83 170.25 47.27 46.10 138.86 178.87 122.10 53.76 454.37 233.79 282.51 188.92 75.26 100.30 37 ER8a ExonRegion 0 56.19 165.79 269.88 200.13 28.52 456.42 82.83 391.39 133.33 373.55 229.60 48.13 78.75 178.12 206.30 139.14 83.29 460.56 212.70 256.54 214.05 79.59 113.55 38 E8a_E9a KnownJunction 0 86.98 221.80 295.38 211.63 26.15 569.39 118.53 462.17 156.48 402.98 257.96 75.92 59.57 161.99 145.74 122.28 79.10 373.29 165.84 310.38 290.60 76.30 87.84 39 ER9a ExonRegion 0 95.21 191.47 291.28 256.52 46.48 529.77 83.56 411.80 141.88 403.22 258.54 43.53 51.70 180.49 219.28 143.58 86.00 500.31 218.88 291.65 217.16 79.30 106.36 40 E9_Da NovelBoundary 0 10.22 9.80 3.34 22.51 20.37 2.61 8.26 18.89 5.67 9.13 5.05 0.00 0.00 0.00 11.25 7.69 9.07 7.30 0.00 5.43 2.29 0.00 3.33 41 E9a_E10a KnownJunction 0 132.47 226.74 465.09 403.88 88.96 713.79 119.68 593.81 189.38 539.39 296.13 69.02 64.12 270.53 296.93 259.16 92.75 704.04 493.85 396.93 300.49 125.96 157.84 42 E10_Aa NovelBoundary 0 23.71 9.08 16.08 21.64 4.16 28.62 7.77 9.73 7.64 16.79 0.00 0.00 0.00 4.83 9.52 22.05 8.13 46.47 8.85 16.23 5.75 2.82 27.83 43 ER10a ExonRegion 0 71.49 137.91 338.99 261.33 35.33 431.09 73.67 362.95 132.68 368.27 232.06 25.59 49.13 148.45 221.08 126.17 95.07 322.82 159.10 347.64 209.18 83.89 78.03 44 E10_Da NovelBoundary 0 6.15 6.71 65.82 33.56 11.54 25.67 20.01 34.91 7.90 23.21 9.11 5.70 13.64 7.77 23.24 14.44 7.67 65.66 4.80 72.03 19.77 5.82 38.58 45 E10a_E11a KnownJunction 1 97.42 182.47 301.73 290.71 49.66 556.55 86.82 383.88 132.58 349.31 235.64 47.12 13.31 129.14 207.31 118.77 120.71 278.86 154.64 297.15 182.80 96.93 76.23 46 I10 Intron 0 10.16 20.70 21.18 36.78 17.30 20.17 20.57 30.45 8.75 29.89 5.97 6.65 11.80 3.72 14.01 15.65 5.87 38.75 25.41 43.59 11.31 5.51 21.08 47 I10_AR1 ActiveIntronRegion 0 9.04 14.22 37.82 27.71 3.07 13.82 13.29 26.90 10.18 26.86 9.77 3.27 8.09 2.75 14.81 9.82 4.73 38.23 20.17 46.30 16.95 4.73 16.81 48 I10_SR1 SilentIntronRegion 0 9.40 13.98 23.52 51.61 10.23 24.71 24.26 38.23 13.38 49.06 8.14 5.34 13.47 3.86 17.57 13.03 9.25 31.37 25.51 59.89 8.91 4.17 29.10 49 I10_AR2 ActiveIntronRegion 0 11.75 19.00 18.01 44.90 18.71 21.47 28.39 37.88 10.77 37.38 5.71 8.81 12.86 4.44 18.23 22.46 6.89 61.81 33.85 54.26 14.07 6.38 28.09 50 I10_SR4 SilentIntronRegion 0 9.78 24.80 22.19 34.76 20.49 21.42 18.81 28.75 7.40 26.61 5.87 6.17 11.83 3.56 12.27 14.24 5.65 30.23 23.58 38.69 10.28 5.88 19.10 51 I10_SR5 SilentIntronRegion 0 11.42 11.97 7.16 17.93 11.81 9.89 7.14 10.10 6.32 10.90 1.90 8.49 13.26 3.84 7.03 8.74 1.62 17.57 12.50 24.00 4.32 1.02 4.32 52 I10 Intron 0 7.77 9.13 16.38 26.27 7.54 16.26 12.08 23.80 7.64 25.17 7.19 6.27 7.04 5.31 12.00 11.19 6.87 43.22 17.18 37.33 12.94 5.48 15.45 53 I10_SR1 SilentIntronRegion 0 5.87 9.29 17.05 31.21 6.92 15.77 13.13 31.25 9.40 30.06 7.44 5.43 7.17 4.67 11.78 16.40 8.03 59.76 22.70 49.18 17.82 7.84 15.23 54 I10_AR1 ActiveIntronRegion 0 9.00 6.09 15.08 23.20 5.81 15.40 13.70 14.82 8.14 24.43 8.00 2.96 6.34 5.49 13.92 10.14 4.96 37.62 15.09 38.41 11.53 3.90 18.38 55 I10_SR2 SilentIntronRegion 0 8.27 9.81 16.69 25.37 8.04 17.10 11.75 23.10 7.03 24.11 7.11 7.13 7.13 5.56 11.86 9.58 6.91 38.54 15.58 33.32 11.52 4.98 15.14 56 I10_AR2 ActiveIntronRegion 0 7.21 2.88 7.38 17.23 7.95 1.80 3.60 11.31 5.26 10.14 3.37 6.04 6.69 4.15 9.13 9.77 3.33 36.74 16.94 27.74 10.65 3.75 13.20 57 ER11a ExonRegion 0 64.79 151.75 234.37 193.21 58.84 452.17 92.24 321.95 134.34 322.88 239.81 19.82 19.23 121.95 239.51 103.20 95.51 218.88 142.99 273.24 201.15 79.87 62.26 58 E11_Da NovelBoundary 0 40.97 32.82 46.36 64.16 15.62 8.29 10.33 54.26 20.14 47.44 7.79 12.45 14.12 7.42 10.75 37.00 9.35 136.63 29.18 85.97 8.96 10.72 19.80 59 E11a_E12a KnownJunction 0 0.00 0.00 5.38 3.10 0.00 5.79 12.23 11.75 0.00 3.33 4.69 0.00 0.00 5.18 0.00 4.10 0.00 6.80 3.48 23.33 6.30 2.33 4.35 60 E11a_E13a KnownJunction 1 101.87 146.55 219.42 224.65 71.31 493.64 73.66 401.38 164.23 369.75 268.70 6.15 14.77 117.66 227.21 103.65 87.33 294.61 149.93 250.11 168.84 59.89 59.33 61 I11 Intron 0 18.91 13.98 19.33 24.85 13.98 26.47 17.29 33.99 9.61 26.31 7.44 5.78 9.94 8.04 17.81 15.93 8.62 63.75 25.40 45.04 10.91 4.58 16.15 62 I11_SR1 SilentIntronRegion 0 18.96 14.02 19.38 24.92 14.02 26.55 17.34 34.08 9.64 26.39 7.45 5.79 9.96 8.05 17.85 15.98 8.64 63.92 25.47 45.16 10.94 4.59 16.19 63 E12_Aa NovelBoundary 0 18.15 120.77 4.35 10.59 7.64 42.02 6.32 21.48 1.24 20.71 0.00 6.30 0.00 0.00 10.75 0.00 4.49 5.97 22.68 23.91 7.35 2.82 7.34 64 ER12a ExonRegion 0 24.31 41.24 11.40 12.90 8.80 24.19 12.26 13.07 1.01 9.45 3.78 1.96 6.35 3.42 6.55 13.33 3.58 9.16 21.44 16.33 6.00 3.27 10.29 65 E12_Da NovelBoundary 1 58.83 55.52 29.89 47.65 166.13 76.15 72.16 45.26 10.10 60.41 15.85 46.67 32.30 19.72 15.33 23.75 8.70 30.88 62.03 30.68 5.31 22.11 20.23 66 I12 Intron 0 24.48 39.75 15.73 46.12 22.70 42.70 19.98 34.26 9.55 33.36 6.52 6.76 9.73 6.37 10.62 12.99 8.70 40.11 22.74 36.55 9.35 6.31 15.78 67 I12_SR2 SilentIntronRegion 0 36.92 34.63 12.59 44.20 31.34 41.28 26.39 41.72 10.24 33.08 8.51 8.40 17.68 6.40 11.33 14.32 13.16 39.31 24.61 47.20 10.43 7.27 20.00 68 I12_AR3 ActiveIntronRegion 0 22.62 50.20 18.41 53.99 25.50 52.74 23.45 37.20 10.76 38.40 7.15 4.80 9.28 8.16 9.30 12.29 8.88 41.95 21.47 32.76 9.32 5.73 13.01 69 I12_SR3 SilentIntronRegion 0 17.17 48.00 19.21 55.10 20.70 52.44 16.79 37.58 10.37 39.26 4.75 11.10 4.14 6.62 12.98 16.48 5.34 51.47 31.79 37.10 10.51 7.73 24.08 70 I12_SR4 SilentIntronRegion 0 15.09 23.83 13.86 28.28 5.51 18.87 7.10 13.45 5.83 20.28 4.29 2.30 3.06 3.33 9.59 8.47 4.71 27.50 12.11 25.27 6.61 4.29 3.72 71 E13_Aa NovelBoundary 0 10.89 48.08 18.07 56.54 18.93 66.84 4.24 28.71 6.05 31.70 7.42 0.00 6.82 7.36 8.90 15.55 12.72 56.75 13.93 49.09 12.05 0.00 8.28 72 ER13a ExonRegion 0 60.05 88.14 197.97 192.29 37.51 244.90 41.03 264.92 104.62 233.47 146.49 16.38 11.64 91.74 150.87 101.20 55.72 226.86 150.90 159.16 134.18 80.04 54.12 73 IG28_AR1 ActiveIntergenicRegion 0 5.22 5.23 14.98 18.90 2.29 4.62 3.68 16.33 7.52 15.74 0.87 0.36 2.24 0.54 4.03 2.46 2.93 14.03 5.58 10.16 3.43 0.97 5.03