Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SCUBE2 Gene 0 15.67 8.16 7.72 4.63 8.46 9.44 3.81 6.25 13.48 5.02 0.21 0.25 0.00 0.00 0.04 0.00 0.09 2.65 1.91 5.19 14.78 45.54 22.64 2 309263 Transcript 0 3.70 0.00 0.00 0.00 0.00 0.00 0.00 4.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 12.55 10.93 3 457346 Transcript 0 6.84 2.92 2.00 2.72 12.63 10.07 3.13 3.39 12.02 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 1.24 3.36 9.09 27.20 22.25 4 450649 Transcript 0 1.70 2.83 5.71 1.03 0.00 0.00 2.96 3.43 1.49 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 4.02 0.00 0.00 5 ER1a ExonRegion 0 0.00 0.00 0.03 0.00 0.70 0.49 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 3.05 1.51 1.60 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.48 8.02 21.08 7 ER2a ExonRegion 0 2.05 1.59 2.21 0.75 4.81 3.82 0.03 1.07 3.03 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 5.28 2.14 9.75 18.75 16.59 8 E2a_E3a KnownJunction 0 3.19 2.43 0.00 1.30 4.33 7.78 0.00 2.34 2.92 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 8.83 20.08 7.17 9 ER3a ExonRegion 0 2.47 1.65 4.54 0.91 4.95 2.12 3.18 3.85 6.22 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 1.52 2.21 14.95 43.27 24.84 10 E3a_E4a KnownJunction 0 3.48 0.00 6.24 0.00 0.00 0.00 0.00 2.01 5.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 14.40 0.00 8.83 31.90 15.62 11 ER4a ExonRegion 0 4.09 1.96 6.28 1.70 3.81 2.69 1.99 5.26 5.20 1.95 0.00 0.00 0.00 0.00 0.00 0.00 1.25 5.53 2.19 3.26 11.69 43.69 17.29 12 E4a_E5a KnownJunction 0 7.48 3.35 7.39 3.63 3.65 8.46 0.00 4.76 2.92 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 0.00 0.00 14.39 46.97 23.90 13 ER5a ExonRegion 0 2.54 4.58 2.28 1.78 1.34 2.31 1.69 5.82 5.37 1.34 0.00 0.00 0.00 0.00 0.00 0.00 1.34 3.72 0.00 3.90 20.03 33.02 20.63 14 E5a_E6a KnownJunction 0 6.59 0.00 3.08 2.00 3.74 0.00 6.23 2.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 13.53 19.96 32.35 15 E6_Aa NovelBoundary 0 10.45 0.00 3.99 11.05 3.31 9.65 0.00 0.00 7.70 4.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 16 ER6a ExonRegion 0 5.34 3.68 1.94 3.28 1.17 6.61 3.96 3.18 6.59 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 2.29 16.56 26.98 16.69 17 E6a_E7a KnownJunction 0 10.00 6.64 3.49 0.00 0.00 0.00 0.00 4.11 12.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.47 0.00 2.49 16.19 27.13 11.87 18 ER7a ExonRegion 0 6.75 9.20 5.88 2.20 4.34 9.68 0.75 3.61 7.82 0.13 1.16 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.81 4.78 8.96 35.10 18.01 19 E7a_E8a KnownJunction 0 6.74 2.70 3.99 0.00 13.58 8.69 0.00 4.11 10.21 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.91 0.00 8.03 41.64 16.65 20 ER8a ExonRegion 0 14.67 1.65 3.25 5.08 5.85 6.11 1.97 5.55 11.50 2.77 0.79 0.00 0.00 0.00 0.00 0.00 0.00 3.52 0.33 3.38 10.91 53.23 28.76 21 E8a_E9a KnownJunction 0 13.48 0.00 10.56 6.69 8.23 2.44 3.44 11.34 25.64 6.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.55 4.05 2.88 19.46 65.64 19.12 22 ER9a ExonRegion 0 15.49 1.64 5.80 3.08 8.07 4.82 8.12 8.99 20.13 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 6.34 7.46 16.48 64.50 21.97 23 E9a_E10a KnownJunction 0 21.78 0.00 4.44 5.29 17.23 6.93 5.74 2.05 13.11 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 13.87 14.15 77.95 41.66 24 ER10a ExonRegion 0 6.02 3.27 5.60 3.52 9.54 9.20 5.84 5.81 16.73 6.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 3.27 6.73 16.93 55.01 23.94 25 E10a_E11a KnownJunction 0 7.04 3.29 5.56 1.96 8.06 7.67 1.90 6.61 7.03 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.75 3.13 11.80 39.80 3.41 26 E10a_E14a NovelJunction 0 0.00 0.00 1.27 0.00 0.00 0.00 1.68 0.00 3.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.72 0.00 27 ER11a ExonRegion 0 9.46 2.00 8.15 1.96 8.46 3.55 5.08 5.03 7.17 3.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.80 4.10 14.67 38.23 23.47 28 E11a_E12a KnownJunction 0 7.33 0.00 1.63 3.56 3.57 17.38 4.50 0.00 7.61 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.33 37.11 8.62 29 E11a_E16a KnownJunction 0 3.41 0.00 11.41 0.00 0.00 0.00 5.92 4.31 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 30 E12_Aa NovelBoundary 0 7.48 12.43 3.40 7.49 0.00 0.00 1.90 0.00 7.23 8.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 3.20 8.46 0.00 10.67 31 ER12a ExonRegion 0 7.09 4.08 1.56 2.61 1.56 7.95 3.03 5.02 8.02 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 1.39 9.27 15.80 27.71 11.55 32 E12a_E13a KnownJunction 0 6.89 3.35 1.71 1.83 3.74 8.69 6.45 2.46 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.76 0.00 6.33 8.34 25.78 32.01 33 E12a_E14a KnownJunction 0 3.70 0.00 0.00 0.00 0.00 0.00 0.00 4.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 12.55 10.93 34 ER13a ExonRegion 0 7.57 2.06 1.56 2.41 8.00 10.22 2.94 2.70 10.90 2.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 3.73 3.74 9.55 23.80 18.43 35 E13a_E14a KnownJunction 0 6.08 3.35 2.72 3.93 26.15 11.30 0.00 5.01 18.69 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.39 32.03 16.30 36 ER14a ExonRegion 0 9.64 8.42 5.36 2.30 10.30 14.51 3.48 6.67 13.40 4.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.64 7.48 12.40 44.41 27.46 37 E14a_E15a KnownJunction 0 10.08 0.00 4.61 1.43 8.32 19.42 2.21 2.55 7.64 2.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 4.80 6.20 13.53 39.01 22.11 38 ER15a ExonRegion 0 14.49 7.39 8.07 6.15 9.67 7.64 3.62 8.42 14.79 7.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.16 3.27 6.22 12.95 44.65 27.92 39 E15a_E16a KnownJunction 0 22.89 5.46 5.17 5.39 15.45 5.51 0.00 8.58 13.43 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 8.47 0.00 22.80 57.56 42.77 40 ER16a ExonRegion 0 25.92 13.04 13.44 4.37 11.62 8.97 4.61 9.31 15.97 3.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.75 3.03 7.25 18.60 54.66 30.56 41 E16a_E17a KnownJunction 0 14.97 17.89 3.49 0.00 0.00 0.00 2.25 10.76 16.96 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 0.00 13.34 58.23 28.17 42 ER17a ExonRegion 0 23.02 11.24 12.78 8.20 10.34 18.19 5.15 15.30 24.18 6.55 0.58 0.00 0.00 0.00 0.87 0.00 0.00 6.98 3.24 5.44 24.77 75.40 29.66 43 E17a_E18a KnownJunction 0 23.93 14.67 30.96 3.43 3.65 29.93 2.21 21.69 23.41 7.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 3.76 3.26 26.07 126.45 59.24 44 ER18a ExonRegion 0 25.12 19.25 18.26 7.91 13.55 18.88 4.51 12.82 28.72 16.37 1.48 0.00 0.00 0.00 0.00 0.00 0.00 3.07 2.10 7.10 30.64 68.63 31.76 45 E18a_E19a KnownJunction 0 95.13 23.81 27.97 20.44 37.52 44.41 7.91 20.66 34.98 17.94 2.68 0.00 0.00 0.00 0.00 0.00 0.00 9.37 0.00 11.25 48.74 144.88 99.19 46 ER19a ExonRegion 0 31.06 13.65 14.67 10.73 9.86 21.26 6.37 13.34 24.62 13.22 0.29 0.00 0.00 0.00 0.00 0.00 0.00 5.12 1.00 8.31 24.50 98.83 60.00 47 E19a_E20a KnownJunction 0 14.52 2.76 5.47 6.43 3.99 13.80 3.58 14.33 6.74 7.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.54 0.00 11.82 11.68 55.72 3.41 48 E19a_E21a KnownJunction 0 0.00 5.66 0.00 2.06 0.00 0.00 0.00 2.55 1.27 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 3.03 0.00 0.00 49 ER20a ExonRegion 0 24.83 12.23 7.05 5.29 12.11 14.28 3.66 6.13 15.36 5.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.88 0.82 6.04 19.42 66.87 29.50 50 E20a_E21a KnownJunction 0 45.79 8.35 6.42 3.20 10.61 11.47 6.49 0.00 14.03 5.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.38 0.00 8.82 19.09 36.31 11.87 51 ER21a ExonRegion 0 24.98 8.73 10.59 8.15 12.78 12.41 6.03 3.25 13.33 5.15 0.00 2.21 0.00 0.00 0.00 0.00 0.00 4.63 2.12 5.41 21.66 56.20 23.65 52 E21a_E22a KnownJunction 0 18.89 3.03 12.30 8.22 24.19 10.05 3.97 4.85 19.15 8.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 8.76 16.49 46.41 34.49 53 I21_AR2 ActiveIntronRegion 0 5.64 2.03 0.27 4.09 2.68 1.83 2.65 1.73 2.47 2.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 3.19 4.26 0.00 9.49 0.00 54 ER22a ExonRegion 0 22.49 4.75 9.74 10.49 22.28 5.89 3.79 4.80 17.00 5.05 0.00 2.76 0.00 0.00 0.00 0.00 0.00 1.34 0.00 6.38 14.63 53.68 28.38 55 E22a_E23a KnownJunction 0 26.52 0.00 13.78 15.65 28.69 8.40 0.00 1.81 20.11 3.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.62 16.56 72.32 37.99 56 ER23a ExonRegion 0 22.10 13.32 9.48 5.70 10.22 10.89 4.34 5.31 15.52 6.21 0.24 0.50 0.00 0.00 0.00 0.00 0.00 1.56 1.81 5.31 9.04 36.52 15.34 57 IG34_AR3 ActiveIntergenicRegion 0 10.46 9.11 7.96 5.91 3.89 7.36 3.00 3.75 10.38 4.68 0.00 0.00 0.00 0.00 0.12 0.00 0.00 2.46 1.71 6.97 3.59 15.87 4.44