Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM41B Gene 0 24.78 22.79 21.38 53.97 43.06 40.82 48.21 46.52 78.77 67.05 51.98 74.08 161.72 37.78 46.15 42.90 52.39 36.09 27.13 58.15 32.27 118.26 97.91 2 299596 Transcript 0 30.75 21.44 9.25 52.24 40.07 39.58 41.25 41.53 121.27 87.33 129.51 119.29 252.91 57.68 47.84 38.79 73.87 13.10 31.91 49.86 11.98 173.23 67.35 3 429086 Transcript 0 1.85 2.29 2.91 6.05 2.17 9.28 13.66 10.77 16.46 18.75 10.69 13.97 39.70 7.23 7.98 3.16 4.75 6.69 1.39 4.12 1.93 28.54 8.05 4 ER1a ExonRegion 0 4.63 4.34 12.15 14.32 7.35 18.74 11.49 16.16 35.73 30.69 30.06 6.59 9.59 28.26 34.99 46.04 47.67 57.63 36.28 51.51 49.74 47.27 169.83 5 E1_Da NovelBoundary 0 3.78 2.76 8.43 5.13 0.00 0.00 3.97 8.71 2.86 2.66 0.00 0.00 6.33 0.00 8.90 15.47 9.44 10.07 3.95 0.00 6.18 0.00 15.19 6 E1a_E2a KnownJunction 0 6.82 12.50 26.14 51.68 27.08 52.81 16.03 46.37 69.85 60.22 54.75 12.00 33.11 56.63 57.85 72.80 51.33 124.40 11.20 64.68 67.40 113.53 275.81 7 E1a_E3a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 4.84 0.00 0.00 2.12 0.00 3.67 0.00 4.44 0.00 5.94 2.66 11.57 3.76 8 I1 Intron 0 11.33 15.14 19.29 17.65 17.16 5.30 13.28 13.52 11.00 13.62 0.92 3.83 11.17 0.53 6.19 5.39 3.36 9.80 10.49 13.41 2.40 4.48 11.43 9 I1_SR1 SilentIntronRegion 0 11.16 19.89 21.59 17.34 16.82 5.51 13.07 11.91 12.23 15.89 0.84 5.07 11.37 0.34 6.70 5.78 4.36 14.62 12.88 17.93 4.26 4.05 12.91 10 I1_AR1 ActiveIntronRegion 0 18.87 18.92 20.07 12.24 28.08 6.12 12.69 15.16 9.15 11.71 0.84 3.92 6.41 0.59 4.18 6.05 3.36 8.82 8.13 11.52 2.37 3.41 5.09 11 I1_AR2 ActiveIntronRegion 0 14.63 18.02 23.48 23.87 20.01 5.17 16.93 12.13 12.86 13.42 0.65 6.26 14.19 0.30 8.01 3.61 2.60 9.20 4.10 18.64 0.26 3.67 11.99 12 I1_SR3 SilentIntronRegion 0 11.16 12.30 18.93 18.92 16.96 5.45 13.41 15.37 11.06 13.79 1.07 3.18 11.72 0.63 6.10 5.49 2.92 8.01 10.56 11.62 1.79 5.19 11.79 13 E2_Aa NovelBoundary 0 6.08 30.19 10.59 14.08 15.87 11.58 20.58 8.42 7.20 14.32 2.26 0.00 0.00 0.00 4.45 0.00 0.00 14.43 4.80 8.82 5.81 0.00 3.59 14 ER2a ExonRegion 0 7.37 19.61 20.29 49.99 33.24 78.06 44.66 48.06 81.51 74.65 57.74 25.39 89.31 46.04 40.45 48.16 65.43 52.75 16.36 50.43 39.11 148.60 91.43 15 E2_Da NovelBoundary 0 14.08 5.92 28.33 33.53 14.35 2.90 31.97 7.02 14.79 23.91 0.00 0.00 42.21 0.00 8.90 3.33 3.83 5.60 14.02 6.52 0.00 7.72 20.66 16 E2a_E3a KnownJunction 0 24.97 25.26 14.16 59.27 23.60 82.68 51.45 36.23 88.08 102.69 83.39 64.82 261.51 48.44 38.20 49.47 62.27 22.30 8.47 25.31 34.53 165.64 59.75 17 E3_Aa NovelBoundary 0 26.30 19.01 6.95 15.02 98.56 47.87 55.29 25.59 18.52 12.97 0.00 0.00 12.99 0.00 0.00 0.00 0.00 4.64 9.51 18.41 0.00 0.00 0.00 18 ER3a ExonRegion 0 26.28 28.52 21.64 69.41 58.08 56.01 85.73 54.49 116.61 100.01 97.81 81.19 260.61 64.41 51.59 43.38 95.60 21.06 20.74 64.95 28.34 200.58 92.31 19 E3_Da NovelBoundary 0 7.48 9.87 8.99 16.58 7.56 4.43 27.16 13.88 20.72 11.68 7.21 23.56 71.59 12.36 4.45 0.00 0.00 3.56 12.05 36.37 0.00 35.52 7.34 20 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 7.55 13.43 6.20 6.83 8.54 2.53 6.30 20.78 4.71 0.00 0.00 0.00 4.15 0.00 0.00 0.00 14.63 3.24 21 E3a_E4b KnownJunction 0 30.75 21.44 9.25 52.24 40.07 39.58 41.25 41.53 121.27 87.33 129.51 119.29 252.91 57.68 47.84 38.79 73.87 13.10 31.91 49.86 11.98 173.23 67.35 22 I3 Intron 0 21.00 15.79 16.90 32.50 23.16 11.50 34.99 18.18 20.70 17.03 7.02 18.73 70.61 7.04 12.77 13.01 10.00 19.38 16.07 37.50 10.29 39.14 28.77 23 I3_AR1 ActiveIntronRegion 1 4.59 5.18 7.27 16.12 8.69 7.96 17.98 4.67 4.65 4.33 0.85 10.53 43.67 3.13 4.57 5.35 3.58 3.05 2.42 18.80 3.99 29.29 6.33 24 I3_SR1 SilentIntronRegion 0 5.20 5.43 11.82 17.91 12.54 6.55 21.34 9.21 9.65 9.53 3.40 16.19 51.13 3.88 6.68 10.94 7.00 13.23 9.92 25.07 7.38 21.66 24.58 25 I3_AR3 ActiveIntronRegion 1 4.83 14.03 22.84 35.92 27.74 16.43 37.23 19.07 28.03 26.57 4.39 16.59 101.50 5.77 18.12 10.29 3.54 16.26 14.83 33.34 3.41 50.26 25.81 26 I3_AR4 ActiveIntronRegion 0 52.44 29.63 32.05 60.61 39.42 18.74 63.09 28.95 32.35 24.70 14.38 30.72 91.76 11.20 22.13 23.72 21.98 37.64 31.47 69.74 23.50 51.69 50.18 27 I3_SR3 SilentIntronRegion 0 38.85 24.45 17.13 35.80 32.55 11.57 33.83 28.15 29.25 20.63 8.69 17.82 69.48 11.11 14.35 15.46 10.35 23.66 19.76 36.31 9.98 49.47 31.42 28 I3_AR5 ActiveIntronRegion 0 13.50 18.09 6.65 29.21 22.39 11.51 42.43 24.42 27.63 23.33 8.13 27.92 88.50 10.17 8.51 9.48 9.43 15.74 13.20 31.13 9.41 54.71 25.98 29 E4_Aa NovelBoundary 0 6.67 3.35 17.15 21.18 47.62 21.46 33.48 5.05 24.25 12.57 0.00 0.00 18.67 2.47 0.00 3.85 0.00 14.22 0.00 10.87 2.29 20.70 17.24 30 E4_Ab NovelBoundary 0 7.19 14.73 7.16 32.73 37.86 5.45 28.48 9.00 14.47 17.62 0.00 6.15 50.81 4.36 19.04 0.00 0.00 7.71 12.80 8.05 0.00 38.58 26.89 31 ER4a ExonRegion 0 3.70 4.58 5.82 12.10 4.35 11.00 13.90 15.34 26.09 28.96 18.85 21.65 58.63 9.74 15.96 6.32 9.49 9.24 2.79 8.24 3.86 42.45 12.85 32 ER4b ExonRegion 0 23.15 38.20 20.29 73.84 47.76 44.88 45.11 66.74 153.02 113.01 106.81 154.98 299.05 51.17 67.95 62.89 87.17 28.57 37.98 67.74 21.52 223.32 86.36 33 E4_Da NovelBoundary 1 21.71 24.80 42.37 90.53 99.75 28.79 116.72 36.27 57.00 50.45 14.32 101.28 231.48 17.25 8.90 8.20 27.49 9.41 18.73 42.19 11.98 81.13 19.12 34 E4a_E5a KnownJunction 0 22.00 36.70 17.44 49.71 22.50 37.59 33.03 60.83 117.65 77.25 71.65 134.59 291.05 45.50 44.01 45.54 90.32 2.11 17.79 63.34 20.08 156.33 37.56 35 I4 Intron 0 16.51 15.69 20.83 47.02 40.18 22.61 37.53 23.77 35.67 29.24 20.11 20.44 82.32 11.94 16.23 18.95 19.66 20.53 18.97 37.12 14.41 54.88 38.68 36 I4_AR1 ActiveIntronRegion 0 11.54 16.99 25.26 50.96 46.04 24.78 44.51 23.22 36.66 26.65 17.11 26.43 126.07 12.34 13.98 18.56 12.75 20.14 21.52 37.31 10.26 57.97 33.03 37 I4_AR2 ActiveIntronRegion 1 10.58 12.20 4.90 23.17 5.35 0.00 13.24 10.37 30.88 14.91 11.60 0.00 46.90 4.87 0.00 35.67 0.00 7.39 0.00 19.15 4.41 10.42 35.24 38 I4_SR1 SilentIntronRegion 1 24.12 14.47 17.36 46.16 38.39 22.63 33.56 27.19 37.74 35.11 25.65 13.95 37.33 12.66 19.64 21.70 28.76 23.18 17.93 39.56 20.61 54.86 49.80 39 I4_AR3 ActiveIntronRegion 1 7.68 13.60 7.39 20.68 3.21 4.77 5.86 5.83 13.73 12.32 8.67 14.97 16.21 3.99 13.43 2.97 18.20 6.39 5.01 20.36 8.25 31.25 11.66 40 E5_Aa NovelBoundary 0 16.15 43.68 21.20 79.74 41.85 36.74 47.61 30.97 53.15 34.57 6.69 12.60 68.50 2.47 10.75 10.77 38.06 30.10 4.80 35.54 11.98 80.77 20.83 41 ER5a ExonRegion 0 35.86 43.73 29.93 109.47 91.08 92.11 103.76 78.44 155.99 126.35 95.67 162.33 365.55 62.95 78.58 58.06 82.90 37.36 34.86 101.38 34.15 215.04 96.71 42 E5a_E6a KnownJunction 0 105.20 64.53 57.45 216.16 131.66 83.87 109.21 110.28 209.84 156.20 118.98 225.67 425.46 58.69 119.29 90.06 112.01 51.98 74.17 126.11 63.63 266.86 139.31 43 E6_Aa NovelBoundary 0 18.30 0.00 11.50 12.65 16.30 11.19 6.18 8.34 8.01 18.72 0.00 0.00 6.66 0.00 0.00 0.00 0.00 9.00 0.00 8.69 2.90 6.18 0.00 44 ER6a ExonRegion 0 66.27 53.08 41.72 150.31 99.66 80.79 114.67 111.67 176.00 152.33 93.22 203.70 444.03 71.51 95.03 84.65 82.95 52.08 51.08 128.50 45.68 246.87 124.06 45 E6_Da NovelBoundary 0 2.82 9.60 5.80 15.05 24.28 6.64 5.65 6.70 10.88 17.49 4.69 0.00 14.12 0.00 14.09 4.36 0.00 5.18 0.00 11.82 3.15 5.08 12.21 46 E6a_E7a KnownJunction 1 64.75 82.95 32.94 163.65 69.78 91.88 135.76 93.11 155.53 121.58 43.70 166.40 332.12 57.27 87.64 101.68 64.89 54.01 48.19 112.94 54.67 279.90 121.39 47 ER7a ExonRegion 0 49.06 52.64 40.01 102.10 95.34 58.32 101.04 88.69 128.91 115.29 78.45 183.47 376.44 56.23 70.98 63.41 70.65 43.93 38.24 95.65 41.15 202.75 113.29 48 E7_Da NovelBoundary 1 26.52 35.45 46.45 96.62 69.52 33.22 43.50 94.55 135.65 125.28 45.75 131.74 359.07 56.33 41.41 48.45 26.93 19.86 18.64 80.09 14.02 191.35 75.97 49 E7a_E8a KnownJunction 0 14.00 5.66 9.91 15.62 17.83 7.15 9.14 12.12 12.12 3.68 19.37 38.56 20.94 6.77 15.20 0.00 8.42 0.00 9.41 2.68 11.37 20.27 27.83 50 I7 Intron 0 35.98 38.41 17.59 35.67 61.66 40.87 51.14 43.30 59.62 53.75 23.18 73.46 164.26 40.70 51.30 35.65 19.64 13.65 20.46 39.39 10.41 132.83 54.92 51 I7_AR1 ActiveIntronRegion 0 29.73 27.01 13.94 32.55 69.87 35.84 52.96 49.16 63.51 57.14 18.00 91.39 202.92 35.14 42.58 33.58 17.64 9.57 16.04 37.67 6.39 146.66 40.80 52 I7_AR2 ActiveIntronRegion 0 46.34 57.17 23.62 40.93 48.59 49.27 48.42 33.96 53.57 48.47 31.74 44.60 102.06 49.96 65.77 39.19 22.99 20.38 27.74 42.35 17.00 110.92 78.17 53 E8_Aa NovelBoundary 1 127.06 200.95 91.69 168.41 170.63 89.27 140.26 174.40 149.71 219.06 37.01 111.49 273.03 31.02 200.14 29.65 20.66 20.35 8.75 75.42 38.05 147.70 85.45 54 ER8a ExonRegion 0 20.85 5.12 12.02 12.48 16.71 10.01 9.37 16.34 11.17 8.98 4.57 9.16 7.38 4.54 12.98 2.45 1.74 3.74 3.06 5.45 4.72 14.90 8.18