Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LMO1 Gene 0 8.74 12.06 27.13 273.74 80.49 30.91 37.27 173.32 248.51 423.47 1.03 0.00 0.00 0.04 0.00 0.00 0.11 126.93 48.70 95.55 0.00 0.14 0.00 2 428101 Transcript 0 0.00 0.00 0.90 25.29 0.00 9.01 0.21 0.07 2.15 8.13 1.55 0.00 0.00 0.00 0.00 0.00 0.00 14.71 19.77 10.91 0.00 0.00 0.00 3 452557 Transcript 0 0.00 1.25 3.18 29.48 10.32 2.51 5.73 17.60 25.23 67.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.79 6.83 20.15 0.00 0.00 0.00 4 335790 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 332914 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 0.00 0.00 0.52 10.18 0.00 4.06 0.42 0.15 2.59 4.90 0.84 0.00 0.00 0.00 0.00 0.00 0.00 8.53 5.18 7.45 0.00 0.00 0.00 7 E1a_E3a KnownJunction 0 0.00 0.00 1.27 40.39 0.00 13.97 0.00 0.00 1.71 11.36 2.26 0.00 0.00 0.00 0.00 0.00 0.00 20.89 34.35 14.38 0.00 0.00 0.00 8 E2_Aa NovelBoundary 0 23.63 46.11 8.69 143.14 138.46 57.86 160.18 150.99 176.65 290.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67.36 72.10 138.57 0.00 0.00 0.00 9 ER2a ExonRegion 0 10.22 14.31 16.71 216.53 96.90 28.94 48.02 162.70 252.64 449.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.18 32.62 84.71 0.00 0.00 0.00 10 E2a_E3a KnownJunction 0 10.52 16.25 28.47 274.69 89.64 15.39 54.85 135.17 192.65 342.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 149.61 9.22 81.75 0.00 0.00 0.00 11 I2 Intron 0 0.71 1.68 3.31 33.70 15.89 4.42 10.05 22.22 37.46 52.30 0.04 0.12 0.02 0.04 0.01 0.06 0.05 35.63 12.67 33.75 0.00 0.03 0.07 12 I2_SR2 SilentIntronRegion 0 0.00 0.00 1.04 17.87 4.26 2.91 6.21 9.31 28.86 39.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.90 12.57 31.69 0.00 0.00 0.00 13 I2_AR2 ActiveIntronRegion 0 0.14 2.52 3.02 21.82 9.23 4.20 17.77 11.05 33.97 47.05 0.00 0.54 0.96 0.17 0.00 0.00 0.00 42.37 12.63 41.38 0.00 0.00 1.45 14 I2_SR3 SilentIntronRegion 0 0.66 1.81 3.13 37.62 18.26 4.52 11.09 23.41 41.16 52.35 0.05 0.16 0.00 0.05 0.02 0.08 0.06 36.81 14.19 38.03 0.00 0.01 0.06 15 I2_AR3 ActiveIntronRegion 0 1.94 1.72 4.72 46.12 17.04 3.90 12.55 35.26 46.76 68.86 0.00 0.00 0.00 0.00 0.00 0.00 0.34 37.45 14.15 38.60 0.00 0.00 0.00 16 I2_SR4 SilentIntronRegion 0 0.93 1.56 4.40 24.25 10.88 4.57 7.03 21.64 28.23 57.44 0.02 0.00 0.00 0.02 0.00 0.00 0.00 34.27 8.36 20.41 0.00 0.09 0.00 17 E3_Ab NovelBoundary 0 0.00 2.57 22.12 180.00 34.72 28.05 31.89 116.73 162.73 304.88 2.11 0.00 0.00 0.00 0.00 0.00 0.00 132.69 32.47 79.77 0.00 0.00 0.00 18 ER3a ExonRegion 0 4.23 14.01 35.81 275.76 66.60 36.47 53.69 145.77 239.48 395.68 3.87 0.00 0.00 0.00 0.00 0.00 0.00 182.11 31.15 113.24 0.00 0.00 0.00 19 ER3b ExonRegion 0 14.03 15.28 60.14 496.80 107.93 63.02 65.56 290.12 457.20 755.86 1.83 0.00 0.00 0.00 0.00 0.00 0.00 312.55 76.38 179.02 0.00 0.00 0.00 20 E3_Da KnownBoundary 0 23.49 26.90 78.68 775.79 141.60 44.12 60.41 380.88 575.63 872.80 4.90 0.00 0.00 0.00 0.00 0.00 0.00 344.73 76.05 224.80 0.00 0.00 0.00 21 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER3c ExonRegion 0 19.47 20.74 75.97 625.84 126.83 45.84 60.11 321.15 512.08 845.50 5.80 0.00 0.00 0.00 0.00 0.00 0.00 275.68 69.44 197.87 0.00 0.00 0.00 23 ER3d ExonRegion 0 23.58 18.88 84.03 619.33 123.47 41.92 44.07 323.22 501.10 824.62 4.14 0.00 0.00 0.00 0.00 0.00 0.00 278.22 89.65 207.60 0.00 0.00 0.00 24 ER3e ExonRegion 0 17.76 18.41 73.19 526.74 108.53 35.34 36.58 277.37 431.96 686.26 1.31 0.00 0.00 0.00 0.00 0.00 0.00 274.41 94.86 193.15 0.00 0.00 0.00 25 E3c_E4a KnownJunction 0 11.19 27.63 69.34 567.66 137.61 54.46 58.74 295.65 441.29 704.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 298.59 81.98 183.06 0.00 0.00 0.00 26 ER4a ExonRegion 0 10.70 23.56 59.71 594.65 102.63 66.21 40.59 330.57 506.80 815.58 3.13 0.00 0.00 0.05 0.00 0.00 0.00 383.94 97.00 191.07 0.00 0.00 0.00 27 E4_Da KnownBoundary 0 0.00 3.35 19.10 113.17 34.55 5.45 10.42 71.30 104.95 226.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 98.49 11.86 58.42 0.00 0.00 0.00 28 E4a_E5a KnownJunction 0 7.56 20.72 49.88 502.63 63.92 44.69 63.59 284.73 424.94 492.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 216.51 116.80 130.14 0.00 0.00 0.00 29 ER4b ExonRegion 0 0.00 1.25 3.18 29.48 10.32 2.51 5.73 17.60 25.23 67.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.79 6.83 20.15 0.00 0.00 0.00 30 E4_Db NovelBoundary 0 10.89 15.46 7.04 117.33 81.24 35.32 42.57 82.27 101.27 203.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.93 30.40 66.60 0.00 0.00 0.00 31 I4 Intron 0 6.96 10.91 12.48 142.25 48.22 16.83 19.41 83.30 101.52 212.81 0.07 0.00 0.00 0.17 0.00 0.45 0.00 66.63 24.79 38.34 0.00 0.00 0.00 32 I4_AR1 ActiveIntronRegion 0 2.98 5.67 0.00 17.95 28.49 7.34 18.24 10.47 20.28 37.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.69 1.62 22.39 0.00 0.00 0.00 33 I4_SR1 SilentIntronRegion 0 7.61 11.91 13.95 157.93 52.33 18.37 20.61 92.46 111.98 235.77 0.08 0.00 0.00 0.20 0.00 0.51 0.00 72.88 27.53 41.25 0.00 0.00 0.00 34 E5_Aa NovelBoundary 0 0.00 6.51 15.37 224.41 42.36 8.35 15.19 138.42 141.23 298.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.37 15.81 43.72 0.00 0.00 0.00 35 ER5a ExonRegion 0 8.43 10.84 27.57 291.21 87.98 27.97 35.13 188.01 213.55 367.27 1.44 0.00 0.00 0.15 0.00 0.00 0.41 100.67 65.09 88.85 0.00 0.52 0.00 36 IG23 Intergenic 0 0.16 0.45 0.17 2.31 2.96 0.79 0.94 5.38 10.32 17.30 0.00 0.21 0.00 0.00 0.01 0.04 0.02 1.52 2.04 2.76 0.00 0.00 0.00 37 IG23_SR2 SilentIntergenicRegion 0 0.11 0.35 0.15 4.09 5.20 1.82 1.54 10.91 19.00 37.38 0.00 0.00 0.00 0.00 0.03 0.00 0.03 2.29 3.00 4.74 0.00 0.00 0.00 38 IG23_AR1 ActiveIntergenicRegion 0 0.00 0.52 0.93 3.71 12.62 2.69 1.68 21.80 22.14 51.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 4.86 4.69 0.00 0.00 0.00