Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RRP8 Gene 0 24.31 30.85 30.86 42.12 37.27 33.88 34.15 61.03 20.34 82.49 40.55 36.60 28.60 47.63 45.17 40.65 37.70 34.46 22.06 47.02 22.52 14.81 18.25 2 254605 Transcript 1 48.65 34.95 45.39 50.95 40.98 55.08 33.51 77.29 28.08 127.64 116.70 47.88 34.03 133.80 134.69 95.39 85.15 56.33 34.08 58.29 51.41 31.91 33.79 3 IG36 Intergenic 0 21.69 10.68 1.37 0.51 7.36 26.14 13.24 3.22 2.30 8.55 23.19 2.55 1.93 26.23 26.11 34.92 33.01 6.23 15.13 10.64 13.77 10.94 24.96 4 IG36_AR1 ActiveIntergenicRegion 0 24.05 11.84 1.52 0.56 8.16 28.98 14.68 3.57 2.55 9.47 25.71 2.80 2.12 29.08 28.41 38.72 36.60 6.90 16.45 11.66 15.27 12.13 27.67 5 ER1a ExonRegion 1 11.25 7.51 7.83 6.48 3.31 6.93 1.40 14.21 4.97 36.42 63.06 7.29 4.31 30.65 23.61 21.46 70.85 10.70 6.40 18.63 40.54 6.18 8.93 6 E1_Da NovelBoundary 0 0.00 0.00 3.25 1.76 0.00 0.00 3.44 7.97 2.95 9.32 19.43 0.00 6.66 7.18 4.45 0.00 7.29 2.57 4.14 11.70 5.56 0.00 16.30 7 E1a_E2a KnownJunction 0 15.48 17.76 30.22 13.15 10.87 14.42 2.25 33.93 14.99 91.73 108.66 29.86 20.94 107.66 77.63 74.00 94.72 36.02 36.24 35.22 60.97 24.25 35.00 8 I1 Intron 0 13.89 4.84 8.04 8.35 6.95 7.54 7.54 11.52 5.44 12.21 13.25 9.70 15.09 10.87 6.96 11.36 10.95 10.47 11.49 7.06 9.22 5.41 15.46 9 I1_AR2 ActiveIntronRegion 0 15.67 5.19 9.17 9.16 7.75 8.43 8.68 13.38 6.10 14.10 14.98 11.45 16.49 12.15 7.86 11.64 12.65 12.11 13.54 8.15 9.94 6.03 17.49 10 E2_Aa NovelBoundary 0 33.49 15.39 18.12 10.42 33.36 2.56 12.37 13.02 6.16 35.94 12.53 24.31 6.17 17.07 13.97 25.29 15.24 27.98 8.66 14.83 8.34 3.12 20.74 11 ER2a ExonRegion 0 66.14 67.33 79.47 77.67 72.26 78.16 58.85 122.29 39.64 191.45 176.59 135.74 136.72 187.63 168.87 158.79 122.82 83.35 50.36 98.82 73.96 61.51 54.55 12 E2_Da NovelBoundary 0 7.26 12.43 6.24 9.79 19.95 34.98 8.66 10.76 2.43 8.06 11.85 24.61 6.82 7.42 4.45 16.41 13.74 6.01 0.00 8.76 11.49 6.18 11.87 13 E2a_E3a KnownJunction 0 72.01 41.11 87.40 94.93 70.54 60.19 55.47 132.05 43.75 178.74 140.67 209.47 112.49 176.88 138.58 114.24 102.57 79.51 60.33 83.99 51.28 62.89 26.63 14 I2 Intron 0 6.50 4.32 3.02 3.36 3.16 3.46 5.63 7.91 1.74 8.07 9.13 16.78 9.18 8.59 8.38 11.23 10.13 6.94 3.76 8.54 9.37 1.48 6.24 15 I2_SR1 SilentIntronRegion 0 6.59 4.38 3.06 3.40 3.20 3.51 5.71 8.01 1.76 8.18 9.26 17.01 9.31 8.71 8.50 11.39 10.27 7.04 3.81 8.66 9.50 1.50 6.33 16 E3_Aa NovelBoundary 0 12.67 3.03 0.00 1.83 7.72 9.71 7.73 12.16 2.92 11.15 12.79 0.00 12.01 17.01 4.45 8.03 21.79 7.83 3.95 2.75 8.34 5.45 12.29 17 ER3a ExonRegion 0 56.88 46.27 53.43 48.80 50.89 63.31 42.90 79.11 29.73 136.69 132.10 85.41 61.68 158.72 134.52 119.75 99.22 61.65 38.86 61.58 69.92 31.80 33.06 18 E3_Da NovelBoundary 0 7.11 0.00 19.72 14.72 7.30 19.08 24.29 12.32 1.42 17.68 8.00 6.30 0.00 7.24 27.32 11.19 0.00 22.14 0.00 2.75 5.75 0.00 0.00 19 E3a_E4a KnownJunction 1 65.42 40.72 35.72 35.33 34.21 76.09 28.84 69.95 14.93 110.46 96.87 12.45 6.33 127.97 136.60 109.29 67.23 58.95 32.66 42.89 61.16 11.82 38.84 20 E4_Aa NovelBoundary 0 8.82 3.03 8.37 15.08 0.00 5.45 6.67 15.48 2.84 16.33 15.11 0.00 0.00 17.48 8.90 18.80 8.04 13.51 4.80 8.95 3.15 0.00 3.93 21 ER4a ExonRegion 1 59.15 37.89 38.90 43.38 42.07 50.50 29.12 63.27 26.10 124.75 140.57 21.21 16.49 147.78 167.36 103.43 74.98 47.49 24.94 63.60 60.91 26.83 36.96 22 E4_Da NovelBoundary 0 0.00 0.00 1.39 2.06 4.33 0.00 3.93 6.45 1.13 7.90 9.69 0.00 0.00 12.77 0.00 7.52 8.79 7.46 3.76 0.00 9.39 3.12 0.00 23 E4a_E5a KnownJunction 1 84.98 35.72 39.97 71.69 44.91 51.45 32.33 72.62 34.78 150.86 153.57 24.46 6.82 192.07 195.07 149.19 86.86 84.11 12.14 91.40 48.99 22.66 44.56 24 ER5a ExonRegion 1 42.45 27.12 44.66 64.11 40.89 41.42 28.35 83.55 35.45 153.07 132.34 18.13 17.09 140.86 160.46 105.02 85.14 64.26 38.40 60.39 49.33 31.72 40.10 25 E5_Da NovelBoundary 0 2.82 2.96 0.00 3.46 0.00 0.00 2.25 2.55 4.75 9.00 2.68 0.00 0.00 2.24 0.00 0.00 4.77 4.44 0.00 0.00 8.40 0.00 3.84 26 E5a_E6a KnownJunction 1 77.87 40.65 52.39 61.60 42.78 94.60 40.10 77.92 37.35 140.97 110.24 24.16 12.50 162.05 188.52 90.75 92.19 86.26 42.45 48.13 56.40 35.64 42.25 27 ER6a ExonRegion 1 37.33 45.18 43.84 54.09 35.89 54.88 44.71 88.79 34.88 140.47 143.31 20.89 14.22 161.11 170.61 86.84 110.53 59.15 52.74 57.40 43.67 48.52 32.82 28 E6a_E7a KnownJunction 1 26.15 20.00 50.94 52.01 49.92 96.14 38.86 111.89 30.70 136.16 103.03 6.30 13.31 124.08 167.75 85.19 77.51 33.00 29.55 53.75 38.80 42.01 32.10 29 ER7a ExonRegion 0 17.34 27.12 25.30 39.17 34.26 27.87 32.48 55.22 17.80 67.60 16.16 27.14 19.51 21.95 21.42 22.14 22.29 27.81 17.99 41.91 12.43 8.97 13.44 30 IG35 Intergenic 0 4.70 8.00 6.63 14.51 10.35 8.73 11.96 12.62 6.38 18.74 3.18 8.23 8.06 4.42 4.54 8.47 6.72 8.58 4.40 12.99 3.46 3.61 4.83 31 IG35_AR3 ActiveIntergenicRegion 0 3.50 13.09 7.53 14.35 13.07 15.37 20.64 27.64 15.43 51.85 7.29 18.31 15.09 10.22 6.56 10.55 15.11 19.76 10.98 21.46 4.85 7.38 6.78 32 IG35_SR3 SilentIntergenicRegion 0 5.11 11.16 10.82 22.26 16.90 18.30 19.30 19.84 9.09 31.98 5.45 10.85 11.98 6.79 5.76 12.06 7.19 14.26 6.84 22.62 4.10 6.24 3.77 33 IG35_AR2 ActiveIntergenicRegion 0 13.87 30.23 24.89 34.56 31.57 19.28 20.74 26.58 17.98 39.05 22.25 4.04 21.37 16.67 11.86 57.86 13.57 37.37 16.14 29.03 12.78 10.88 16.51