Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM160A2 Gene 0 35.50 26.05 40.68 47.21 24.55 47.29 24.68 66.45 30.84 74.56 91.40 25.35 42.04 79.10 87.00 76.64 57.67 48.65 40.49 28.35 100.96 64.95 76.92 2 449352 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 442917 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 265978 Transcript 0 6.74 12.98 28.97 23.01 8.15 8.36 7.37 32.19 7.97 55.39 49.13 15.21 21.81 44.15 34.16 39.03 20.88 35.14 13.50 16.24 37.05 10.52 26.96 5 ER1a ExonRegion 0 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.30 0.45 0.00 0.00 6 E1_Ab KnownBoundary 0 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 4.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 1 26.13 15.89 9.76 13.27 7.56 63.04 21.93 25.06 8.57 19.72 29.48 0.51 0.63 26.18 34.69 45.91 28.88 28.71 21.44 13.43 48.33 34.02 56.64 8 E1a_E2a KnownJunction 0 3.04 6.38 6.06 6.89 8.40 13.29 3.53 9.04 8.83 17.57 4.53 6.30 6.82 2.41 4.45 15.81 8.60 9.41 4.33 2.75 19.95 8.70 0.00 9 ER2a ExonRegion 0 7.52 8.93 17.18 16.68 14.48 35.51 11.64 30.98 17.59 50.59 67.24 10.54 11.69 46.18 52.40 38.98 46.16 32.92 23.39 23.09 76.37 36.05 44.41 10 E2a_E3a KnownJunction 0 32.60 20.46 15.64 24.94 12.05 31.46 6.67 41.03 33.25 60.25 69.75 18.01 27.11 70.81 43.39 63.06 66.01 55.42 39.62 37.01 96.99 40.29 64.19 11 ER3a ExonRegion 0 21.36 22.65 28.08 31.54 16.34 42.71 22.96 59.05 28.48 72.59 93.21 19.20 31.86 89.49 76.27 72.97 64.47 56.76 42.30 33.57 113.04 64.23 70.95 12 E3a_E4a KnownJunction 0 17.78 48.87 54.40 43.72 19.44 58.32 48.84 77.75 39.93 100.79 74.02 35.71 54.22 87.88 72.32 74.25 40.11 52.48 78.31 27.16 116.76 100.42 79.73 13 E4_Aa NovelBoundary 0 3.11 8.29 0.00 0.00 0.00 2.21 4.28 4.52 1.33 1.29 14.16 5.40 6.49 9.42 6.30 23.75 30.95 0.00 3.76 3.26 13.28 2.94 8.02 14 ER4a ExonRegion 0 27.12 37.92 53.65 66.28 36.18 70.69 38.88 83.48 55.29 118.59 123.13 69.03 87.61 121.16 112.71 119.82 83.77 72.27 71.78 37.96 145.33 108.19 123.32 15 E4a_E5a KnownJunction 0 65.49 29.93 77.70 120.56 58.74 81.43 44.16 127.04 89.24 144.73 169.04 119.14 105.84 205.31 266.89 195.59 80.97 112.88 127.63 46.21 172.85 187.25 214.35 16 ER5a ExonRegion 0 33.89 50.96 68.14 92.22 41.77 67.70 33.27 127.65 79.91 153.95 222.37 50.46 96.55 172.70 136.93 135.21 128.77 80.35 96.95 37.64 186.50 146.28 140.01 17 E5a_E6a KnownJunction 1 37.49 55.06 55.29 90.17 47.20 112.09 24.25 119.32 76.16 163.88 176.83 36.61 137.49 159.81 143.15 116.55 115.29 48.67 62.59 44.23 159.01 93.50 91.94 18 ER6a ExonRegion 0 50.17 36.46 60.22 95.30 28.35 86.20 44.98 126.66 76.70 136.23 185.11 95.22 134.20 155.00 149.00 146.71 111.64 87.65 80.94 42.95 175.19 130.62 145.94 19 E6a_E7a KnownJunction 0 37.86 23.09 54.70 83.24 12.73 65.36 54.14 159.74 58.74 122.14 103.50 67.97 118.99 109.31 142.65 108.09 83.12 53.14 79.81 59.57 137.45 100.06 134.45 20 ER7a ExonRegion 0 22.30 20.54 46.12 64.00 30.27 47.70 29.69 109.63 60.95 112.76 161.08 64.83 123.99 130.84 132.37 130.40 90.77 60.91 47.62 42.66 180.62 84.12 89.16 21 E7_Da NovelBoundary 0 5.33 0.00 8.75 22.18 6.28 27.14 10.47 23.58 22.63 23.85 46.33 16.06 24.02 21.48 17.55 53.40 27.40 15.25 24.38 16.55 60.05 43.72 21.94 22 E7a_E8a KnownJunction 0 29.04 18.02 66.17 73.35 26.06 69.96 43.41 89.21 72.71 93.96 139.93 103.38 107.79 121.73 154.65 204.48 114.45 89.95 75.67 52.09 138.88 121.43 135.98 23 E8_Aa NovelBoundary 0 14.15 4.80 33.71 26.57 4.33 14.82 16.52 38.90 23.09 40.48 36.59 24.16 24.02 35.02 26.82 60.75 20.76 25.20 17.51 24.61 44.79 30.25 64.96 24 ER8a ExonRegion 0 22.86 30.84 73.61 74.98 19.22 67.13 30.54 107.07 54.80 120.60 134.57 71.46 128.15 122.89 136.54 143.10 92.85 97.03 71.57 42.60 158.61 103.53 133.19 25 E8_Da KnownBoundary 0 10.96 9.34 25.99 21.38 4.33 21.98 17.49 10.64 1.45 44.13 27.90 12.60 40.74 67.22 33.01 36.06 13.18 10.49 32.10 15.40 20.08 22.47 19.38 26 E8a_E9a KnownJunction 1 12.97 21.31 40.36 56.17 11.38 46.00 22.70 82.68 59.35 73.98 91.23 5.70 111.03 79.46 61.19 63.40 55.73 76.90 33.51 10.35 115.96 63.01 59.33 27 ER8b ExonRegion 0 6.95 11.09 27.13 21.25 7.64 9.34 8.83 24.86 5.29 49.64 39.67 24.12 30.15 49.57 31.36 36.80 17.45 27.67 19.57 14.84 27.02 11.11 28.74 28 E8b_E9a KnownJunction 0 6.52 14.87 30.81 24.77 8.66 7.38 5.92 39.51 10.65 61.14 58.59 6.30 13.47 38.73 36.96 41.27 24.31 42.61 7.44 17.64 47.07 9.92 25.18 29 ER9a ExonRegion 0 21.71 15.04 40.55 32.66 17.29 36.54 18.44 47.72 24.34 54.76 81.66 14.61 34.26 67.65 73.33 79.29 49.61 40.44 35.75 23.64 91.29 60.58 76.20 30 E9_Da NovelBoundary 0 45.86 14.93 7.48 28.67 55.94 38.90 9.76 41.85 12.93 28.12 57.17 12.15 13.64 72.46 56.25 65.62 76.86 31.05 22.40 16.87 80.37 53.33 53.27 31 E9a_E10a KnownJunction 0 6.45 9.34 74.04 42.25 30.22 36.68 23.27 61.69 19.13 52.81 40.80 12.45 0.00 19.01 42.77 31.70 29.64 43.24 35.58 20.26 44.85 45.93 35.60 32 E9a_E11a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.65 0.00 4.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 I9 Intron 0 93.51 38.57 10.63 47.67 59.17 58.44 36.19 57.64 22.83 48.43 90.24 65.46 85.25 62.19 49.80 68.84 54.73 21.45 32.14 16.04 66.69 71.63 69.85 34 I9_AR1 ActiveIntronRegion 0 50.64 25.76 5.64 42.84 43.02 46.47 26.99 60.30 28.05 52.76 107.65 70.84 101.90 78.18 59.39 94.61 72.18 30.72 39.74 20.25 89.69 81.87 95.38 35 I9_AR2 ActiveIntronRegion 0 117.33 46.02 11.78 50.81 66.08 68.84 43.48 59.13 21.43 49.22 89.59 68.35 88.44 56.43 43.67 60.40 51.59 17.71 29.19 14.30 56.45 71.69 57.77 36 I9_AR3 ActiveIntronRegion 0 123.77 46.61 19.13 49.84 77.01 55.75 36.15 47.06 14.72 35.93 51.15 44.05 36.16 41.91 45.80 33.43 22.91 10.89 23.20 11.33 43.40 47.35 46.05 37 E10_Aa NovelBoundary 0 163.21 41.18 29.54 51.01 35.74 50.08 23.01 47.97 12.56 30.78 41.96 31.36 12.50 57.33 17.80 54.69 18.14 17.29 24.75 11.25 71.48 22.66 44.99 38 ER10a ExonRegion 0 100.66 18.51 61.76 58.47 46.93 46.69 30.29 90.19 24.01 79.07 69.20 37.67 34.33 61.39 87.73 65.74 35.45 24.50 39.63 27.96 86.52 53.21 79.94 39 E10_Da KnownBoundary 1 166.33 39.27 71.26 94.56 65.03 70.13 39.97 136.86 27.63 111.77 109.55 23.71 38.63 94.41 136.23 126.63 36.47 37.14 59.86 34.90 128.25 64.05 135.47 40 E10a_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER10b ExonRegion 0 105.73 49.08 54.82 79.27 30.50 53.26 34.33 123.81 22.41 108.53 74.79 16.49 34.55 72.08 94.63 88.07 33.11 40.32 40.29 40.08 110.06 77.15 98.25 42 E10_Ab KnownBoundary 1 164.03 48.02 65.49 104.62 57.81 60.93 33.87 145.28 27.84 110.46 86.92 24.31 27.27 80.82 128.69 122.36 40.67 62.06 48.75 60.40 133.38 113.96 88.35 43 ER10c ExonRegion 0 89.90 39.94 54.62 79.61 22.63 55.98 42.56 103.42 22.21 100.14 87.01 14.98 26.06 71.27 103.64 68.80 49.19 55.89 54.52 40.60 116.76 56.36 61.96 44 E10_Db NovelBoundary 0 58.08 0.00 1.45 3.43 13.84 0.00 5.70 15.36 15.71 10.50 25.32 5.25 0.00 36.32 38.82 20.34 43.01 1.95 4.71 0.00 8.46 5.88 0.00 45 E10b_E11a KnownJunction 0 81.05 46.24 68.60 84.34 31.83 70.41 58.03 99.93 22.48 117.55 74.12 7.50 20.45 52.92 97.78 37.68 38.71 58.45 43.67 39.50 111.38 47.46 57.96 46 I10 Intron 0 11.54 0.00 0.59 3.26 2.57 1.76 1.70 5.78 1.77 5.48 4.96 0.00 0.00 9.44 9.47 4.77 4.24 2.65 1.02 0.00 1.41 2.67 1.88 47 I10_SR1 SilentIntronRegion 0 13.97 0.00 0.62 3.98 3.20 2.19 2.11 6.50 2.20 6.45 5.71 0.00 0.00 11.42 11.27 4.57 5.00 2.86 1.27 0.00 1.76 3.00 2.32 48 E11_Aa NovelBoundary 0 35.56 0.00 3.10 2.06 15.37 2.21 2.25 17.87 4.31 10.99 7.16 0.00 0.00 15.30 14.96 27.51 4.77 2.57 4.33 0.00 2.66 6.12 0.00 49 ER11a ExonRegion 1 103.13 50.10 66.79 83.72 49.13 80.90 35.57 109.17 27.32 100.10 100.37 7.81 34.64 75.41 112.81 66.41 56.72 62.79 44.69 30.23 107.10 52.96 86.48 50 E11a_E12a KnownJunction 1 106.61 56.31 57.06 100.45 39.39 35.66 33.03 97.47 20.34 80.88 72.91 0.00 27.43 80.05 108.17 48.11 68.72 44.85 20.33 23.33 89.14 16.90 47.29 51 I11 Intron 0 15.62 2.92 4.00 2.35 7.70 2.99 3.37 8.38 1.61 5.36 3.14 2.44 3.49 2.57 3.13 3.50 3.66 2.21 2.10 2.36 0.99 2.75 2.01 52 I11_AR1 ActiveIntronRegion 0 19.11 1.83 3.43 2.19 7.91 2.23 2.73 5.81 2.47 4.30 4.40 3.88 6.12 5.09 3.71 1.89 2.34 2.08 2.14 2.99 1.16 5.16 3.20 53 I11_SR2 SilentIntronRegion 0 26.46 5.23 5.14 1.47 17.90 4.36 3.56 15.79 1.20 10.02 2.56 1.19 3.80 3.61 3.67 6.11 6.11 2.45 1.96 3.52 1.69 1.60 0.49 54 I11_AR2 ActiveIntronRegion 0 22.55 4.48 7.23 3.55 3.61 4.71 4.09 8.25 0.57 5.12 4.40 2.75 4.48 1.74 2.51 3.85 7.23 2.58 1.35 2.38 0.46 0.96 2.05 55 I11_SR3 SilentIntronRegion 0 18.30 3.18 4.33 3.32 4.34 2.05 2.94 9.81 2.20 5.19 2.73 2.23 0.42 2.25 3.62 3.92 2.77 4.23 5.32 2.08 1.53 2.33 2.46 56 E12_Aa NovelBoundary 0 17.34 14.73 2.72 8.32 4.33 0.00 4.02 9.00 4.60 5.64 0.00 0.00 0.00 7.06 4.45 0.00 0.00 4.39 4.61 3.20 5.93 8.08 3.16 57 ER12a ExonRegion 0 60.65 40.72 44.21 61.94 42.58 39.58 26.83 64.63 23.77 61.94 63.76 13.08 14.10 57.65 98.80 48.81 38.35 28.71 21.04 20.60 59.94 50.72 52.34 58 ER12b ExonRegion 0 0.63 0.81 0.00 0.95 0.00 0.92 0.53 0.00 0.00 1.03 0.00 0.00 0.00 4.87 5.80 3.86 0.00 1.11 2.23 1.49 0.00 0.42 0.00