Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RNH1 Gene 0 94.12 52.06 193.00 118.06 49.19 110.76 48.68 150.79 71.05 186.95 343.50 38.16 58.76 395.82 434.88 229.23 195.74 179.63 97.18 113.34 650.63 311.24 288.77 2 356187 Transcript 0 1.70 3.35 6.34 4.41 0.00 4.34 0.00 4.17 2.36 3.75 12.40 3.00 0.00 7.15 6.68 2.18 4.77 5.18 0.00 1.25 23.01 10.15 7.60 3 397604 Transcript 0 16.08 0.00 38.29 3.10 0.00 0.00 0.00 19.30 5.90 15.07 7.69 0.00 7.14 15.48 17.06 12.13 17.48 5.26 9.41 11.19 51.46 13.90 3.33 4 354420 Transcript 0 3.48 0.00 0.00 1.47 0.00 0.00 0.00 2.09 4.14 6.12 11.85 6.30 0.00 12.42 6.18 0.00 0.00 3.69 0.00 7.86 6.18 11.08 4.18 5 438658 Transcript 1 0.00 0.00 24.01 8.86 0.00 0.00 0.00 0.00 0.00 12.28 45.17 0.00 5.84 30.31 53.77 8.12 53.95 0.00 9.13 0.00 68.45 0.00 15.11 6 397614 Transcript 1 0.00 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.00 9.16 18.58 0.00 0.00 10.30 22.99 0.00 20.66 0.00 4.80 0.00 13.71 3.06 3.41 7 426245 Transcript 1 17.71 34.27 53.28 49.01 47.45 50.54 30.43 50.89 33.77 38.20 124.08 5.85 43.83 115.25 103.96 51.27 114.82 80.75 51.77 41.48 127.08 48.62 44.90 8 397615 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 10 ER1b ExonRegion 0 47.41 20.13 38.14 16.28 12.01 73.86 23.68 25.46 19.27 41.53 64.69 1.08 0.12 57.37 100.20 84.09 62.70 54.98 33.67 39.61 112.58 102.56 144.04 11 E1a_E3a KnownJunction 0 3.48 0.00 0.00 1.47 0.00 0.00 0.00 2.09 4.14 6.12 11.85 6.30 0.00 12.42 6.18 0.00 0.00 3.69 0.00 7.86 6.18 11.08 4.18 12 E1a_E4a KnownJunction 0 3.41 6.71 12.68 8.82 0.00 8.69 0.00 8.34 4.72 7.49 24.53 6.00 0.00 14.30 13.35 4.36 9.54 10.36 0.00 2.49 46.02 19.10 15.19 13 E1a_E4b KnownJunction 0 16.08 0.00 38.29 3.10 0.00 0.00 0.00 19.30 5.90 15.07 7.69 0.00 7.14 15.48 17.06 12.13 17.48 5.26 9.41 11.19 51.46 13.90 3.33 14 ER2a ExonRegion 1 20.28 21.63 15.57 13.36 3.86 30.87 14.40 11.15 5.80 21.40 55.49 2.81 4.18 82.36 100.94 34.16 74.37 5.40 33.95 11.67 54.46 15.82 28.11 15 E2a_E3a KnownJunction 1 7.56 6.31 9.25 14.85 0.00 4.43 2.25 23.49 13.86 21.49 119.08 6.30 25.97 90.88 97.66 27.43 171.01 12.10 16.85 9.46 60.23 7.84 14.77 16 E2a_E4a KnownJunction 0 0.00 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.00 9.16 18.58 0.00 0.00 10.30 22.99 0.00 20.66 0.00 4.80 0.00 13.71 3.06 3.41 17 E2a_E4b KnownJunction 1 0.00 0.00 24.01 8.86 0.00 0.00 0.00 0.00 0.00 12.28 45.17 0.00 5.84 30.31 53.77 8.12 53.95 0.00 9.13 0.00 68.45 0.00 15.11 18 E3_Aa NovelBoundary 0 17.86 14.60 45.12 31.43 52.80 68.94 16.34 103.88 19.33 63.10 30.27 36.31 53.89 71.58 24.60 44.09 31.23 41.49 33.88 34.26 24.96 35.33 27.15 19 ER3a ExonRegion 1 31.25 26.12 43.99 74.43 47.45 55.94 37.64 109.78 35.51 97.33 155.02 44.10 50.53 176.63 190.14 107.94 137.19 60.14 72.84 59.73 256.75 134.59 103.07 20 E3_Da NovelBoundary 0 13.93 25.00 34.12 28.60 103.74 50.88 15.63 69.09 12.79 51.31 7.48 30.61 13.64 42.44 9.64 15.04 3.93 24.13 35.01 23.33 23.10 22.23 30.22 21 E3a_E4a KnownJunction 0 6.89 26.84 1.51 34.89 27.25 58.55 20.14 41.57 15.74 42.87 97.71 11.85 48.37 69.63 82.08 32.56 43.48 29.56 27.86 26.21 111.51 42.80 45.58 22 E3a_E4b KnownJunction 1 17.71 34.27 53.28 49.01 47.45 50.54 30.43 50.89 33.77 38.20 124.08 5.85 43.83 115.25 103.96 51.27 114.82 80.75 51.77 41.48 127.08 48.62 44.90 23 I3 Intron 0 3.32 4.45 20.68 9.82 10.73 21.30 6.48 32.15 6.69 31.29 10.95 2.67 3.77 13.56 11.58 9.52 7.84 23.89 11.71 13.50 15.43 9.52 11.04 24 I3_SR2 SilentIntronRegion 0 3.29 5.50 23.61 11.66 15.79 33.20 7.65 41.68 7.44 39.49 12.05 1.80 3.58 15.61 11.26 11.66 8.61 27.30 12.03 16.18 13.76 10.60 11.06 25 ER4a ExonRegion 0 15.86 33.51 45.37 67.91 37.69 97.56 28.21 70.44 44.12 98.80 258.14 29.11 49.01 206.88 230.21 81.45 153.42 81.94 92.47 64.63 415.22 155.03 138.15 26 E4_Ab KnownBoundary 1 19.26 44.33 81.13 99.92 15.45 40.49 39.97 115.99 64.99 144.54 316.55 35.41 70.94 273.71 259.72 101.60 194.58 106.66 93.74 118.31 582.68 160.06 145.03 27 ER4b ExonRegion 0 32.00 54.12 228.97 161.06 35.35 79.32 34.40 140.77 106.03 231.86 527.13 64.94 100.62 463.12 528.10 260.95 253.89 193.70 95.40 165.24 976.26 365.96 364.69 28 E4a_E5a KnownJunction 0 85.13 69.53 311.82 179.96 40.07 105.68 26.14 226.65 123.32 213.12 432.21 61.52 80.03 553.66 556.28 482.18 290.79 410.02 107.49 177.05 848.94 455.88 689.90 29 I4_SR1 SilentIntronRegion 0 6.93 13.92 19.67 12.64 12.18 21.30 8.10 35.14 4.45 41.83 4.89 9.57 1.64 6.26 12.22 9.65 9.12 33.84 16.28 14.29 6.27 12.06 7.95 30 I4_AR2 ActiveIntronRegion 0 6.50 6.71 13.43 13.33 0.45 9.21 3.17 18.74 3.20 21.74 9.01 1.20 0.73 9.33 12.16 1.93 6.28 23.82 19.73 20.46 3.93 3.36 0.39 31 E5_Aa NovelBoundary 0 6.96 6.05 32.79 17.08 7.39 33.56 1.99 54.63 10.10 53.48 4.58 0.00 6.82 7.18 13.60 8.72 16.27 48.46 16.57 14.76 25.21 7.96 4.35 32 ER5a ExonRegion 0 85.60 86.34 299.09 181.98 87.61 208.14 82.54 213.10 122.02 255.83 567.41 66.46 84.67 561.86 645.61 364.32 309.53 385.26 177.10 171.71 1042.47 421.89 483.16 33 E5a_E6a KnownJunction 1 123.87 144.71 268.65 165.28 80.39 162.07 112.39 194.36 98.96 255.24 416.37 95.13 73.37 582.09 476.42 288.30 255.91 312.77 86.21 135.25 1028.90 381.67 303.64 34 ER6a ExonRegion 0 138.84 61.46 273.53 169.05 47.15 113.72 57.85 180.44 88.36 229.96 450.51 55.14 128.85 596.47 623.07 353.79 269.01 305.51 134.25 133.52 956.41 449.61 418.75 35 E6_Da NovelBoundary 0 38.90 9.27 51.45 19.91 4.33 14.93 3.93 60.26 14.84 52.14 21.79 11.85 14.93 22.84 51.05 16.24 3.83 93.15 24.85 17.77 43.80 33.19 26.72 36 E6a_E7a KnownJunction 1 135.51 48.94 231.45 114.20 26.99 100.74 50.65 104.82 74.68 187.12 421.26 7.50 47.40 490.79 559.00 257.03 205.80 220.12 88.85 119.46 857.72 383.57 367.83 37 I6 Intron 0 25.58 5.40 34.78 21.76 10.29 23.67 8.97 32.51 10.45 33.80 23.18 4.59 10.63 35.28 30.89 16.88 15.41 37.03 11.67 18.12 30.87 22.13 25.81 38 I6_AR1 ActiveIntronRegion 0 25.67 5.42 34.90 21.83 10.33 23.76 9.00 32.62 10.48 33.92 23.26 4.61 10.67 35.39 31.00 16.93 15.47 37.16 11.71 18.18 30.98 22.21 25.91 39 E7_Aa NovelBoundary 0 62.16 14.47 51.39 24.27 15.37 33.67 14.57 48.51 17.53 85.07 30.90 5.70 6.17 33.08 38.07 21.53 16.74 52.81 24.00 27.42 35.77 31.54 22.79 40 ER7a ExonRegion 0 165.41 76.04 245.52 153.75 58.51 151.20 70.25 164.28 89.31 212.83 441.66 52.76 62.42 568.66 504.00 291.36 260.13 232.49 105.94 120.57 918.96 381.67 392.38 41 E7a_E8a KnownJunction 1 160.84 114.91 299.84 173.30 62.73 184.72 71.37 199.41 105.06 268.73 396.21 87.48 60.39 649.66 600.04 346.83 230.76 229.11 83.96 129.56 764.56 417.12 417.08 42 ER8a ExonRegion 0 135.43 73.68 270.35 156.13 65.49 152.00 74.07 207.47 88.05 238.74 405.87 51.62 48.11 584.14 522.58 292.07 236.22 233.48 114.52 158.32 867.84 368.47 379.14 43 E8a_E9a KnownJunction 0 163.88 64.13 293.75 177.43 87.10 195.17 74.15 256.14 93.98 282.70 439.59 43.21 31.65 608.51 535.14 273.86 226.37 260.74 89.79 198.53 872.54 394.96 452.34 44 ER9a ExonRegion 0 150.15 67.85 329.98 189.93 68.10 183.62 71.50 248.50 105.15 288.68 518.37 34.31 39.80 617.38 575.02 372.85 257.55 299.24 135.05 182.52 912.40 437.89 456.76 45 E9_Da NovelBoundary 0 3.78 0.00 35.13 5.39 4.33 0.00 4.20 28.34 10.45 55.66 6.63 0.00 0.00 2.35 0.00 3.50 3.55 15.13 8.94 9.97 0.00 5.51 7.85 46 E9a_E10a KnownJunction 0 165.07 102.94 300.43 158.42 57.56 125.78 59.53 283.08 93.32 278.21 460.17 27.61 44.32 329.45 505.35 268.22 231.70 196.70 125.27 140.55 829.73 374.57 384.73 47 I9 Intron 0 2.74 3.29 17.74 6.91 4.77 13.08 7.93 38.79 5.07 42.89 4.38 1.73 3.13 4.69 4.37 10.59 4.81 32.58 19.08 17.22 8.20 3.37 6.66 48 I9_SR1 SilentIntronRegion 0 2.63 2.53 14.41 4.16 3.63 10.21 4.39 37.65 5.92 37.76 5.53 1.48 4.80 5.29 2.97 11.28 1.96 29.32 11.60 14.88 5.75 4.39 5.66 49 I9_AR1 ActiveIntronRegion 0 2.84 3.82 20.08 8.76 5.55 15.07 10.31 39.94 4.56 46.64 3.68 1.91 2.07 4.34 5.31 10.25 6.71 35.03 24.12 18.92 9.87 2.75 7.37 50 E10_Aa NovelBoundary 0 7.26 0.00 26.11 8.09 7.89 4.94 7.95 50.23 14.64 54.18 2.37 0.00 6.82 2.35 9.52 3.50 3.83 46.30 8.47 13.42 12.05 15.06 10.93 51 ER10a ExonRegion 0 193.59 84.01 310.66 163.86 71.06 174.46 78.45 268.38 101.41 310.68 490.65 36.61 66.76 572.15 618.00 328.29 245.93 273.22 134.88 151.91 932.34 419.94 431.09 52 E10_Da NovelBoundary 0 14.30 6.64 45.92 13.05 11.38 8.18 14.00 44.28 9.26 84.70 14.74 12.15 6.82 2.47 0.00 7.95 13.00 52.56 32.38 26.08 11.49 18.06 18.18 53 E10a_E11a KnownJunction 0 218.11 95.51 268.62 173.97 86.16 140.15 53.83 198.96 82.70 274.23 438.69 37.81 35.55 471.72 572.47 353.92 213.18 259.13 94.03 134.74 791.24 341.93 426.56 54 I10_SR1 SilentIntronRegion 0 11.63 4.98 16.73 3.72 13.07 23.52 10.51 18.88 9.56 35.49 9.44 5.68 11.63 9.89 7.14 8.17 7.06 28.62 16.54 16.89 6.73 5.73 10.76 55 ER11a ExonRegion 0 66.32 49.54 229.51 121.62 63.37 88.31 40.01 178.79 77.02 241.16 389.43 32.18 67.72 404.54 610.11 225.08 178.11 147.07 83.97 143.25 706.81 394.42 278.67 56 E11a_E12a KnownJunction 0 132.47 43.74 317.64 189.89 29.37 128.90 32.02 231.25 106.91 298.87 457.17 52.67 74.51 583.91 657.40 347.00 290.04 216.51 143.06 149.89 864.94 436.78 343.76 57 ER12a ExonRegion 0 103.19 35.71 178.32 99.20 48.48 71.88 29.26 146.37 65.00 187.41 290.21 39.79 77.71 326.57 445.47 200.83 169.51 112.79 82.61 103.54 549.71 392.89 216.20 58 ER12b ExonRegion 0 6.35 0.00 1.23 1.36 2.68 0.92 3.31 0.00 0.00 4.59 3.87 0.00 0.00 9.74 5.80 1.49 0.00 0.00 3.19 2.13 6.61 6.25 4.40 59 IG19 Intergenic 0 5.65 9.46 24.66 6.08 4.70 11.70 5.90 25.32 4.79 25.09 1.45 2.11 0.38 1.38 3.30 1.06 2.79 18.72 12.44 10.11 3.66 2.17 4.68 60 IG19_AR2 ActiveIntergenicRegion 0 3.22 2.74 21.53 4.12 3.99 1.28 0.98 22.15 2.20 19.45 2.20 3.19 1.15 2.86 5.14 4.43 5.68 15.04 14.23 14.37 2.81 2.75 2.63 61 IG19_AR1 ActiveIntergenicRegion 0 4.10 5.90 10.15 3.44 0.65 7.98 7.36 18.05 1.78 16.94 0.93 0.00 0.00 1.32 3.46 0.72 1.60 14.44 7.70 7.20 3.73 2.01 2.84 62 IG19_SR1 SilentIntergenicRegion 0 6.50 12.21 29.99 7.51 5.91 15.06 6.80 29.19 6.10 29.79 1.49 2.61 0.37 1.20 3.16 0.71 2.54 21.39 14.22 10.52 4.02 2.10 5.78