Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-140A10.1 Gene 0 1.49 6.24 4.78 5.58 2.39 17.93 4.32 12.35 10.12 7.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 4.89 7.89 0.00 0.40 0.38 2 443922 Transcript 0 0.19 0.92 2.00 2.93 1.20 9.31 3.51 5.67 4.05 3.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 1.65 4.41 0.00 0.20 0.00 3 414106 Transcript 0 1.18 7.53 3.78 5.49 7.20 17.61 3.41 11.27 9.28 5.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.88 6.59 6.77 0.00 0.33 0.47 4 ER1a ExonRegion 0 0.77 0.74 3.33 1.04 0.00 13.36 3.85 2.41 4.09 5.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.01 2.37 1.98 0.00 0.00 0.00 5 E1_Da NovelBoundary 0 0.00 0.00 2.75 5.69 8.57 16.81 10.82 21.24 6.19 10.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.43 4.80 3.26 0.00 0.00 0.00 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 2.00 0.00 0.00 0.00 2.55 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 7 I1 Intron 0 0.57 3.95 9.67 8.71 3.59 22.12 4.08 20.02 11.72 6.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 11.53 5.85 0.00 0.98 0.00 8 I1_SR1 SilentIntronRegion 0 0.39 1.87 6.36 2.36 1.33 13.71 2.02 18.86 4.53 4.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 2.74 2.88 0.00 0.00 0.00 9 I1_AR1 ActiveIntronRegion 0 0.74 4.93 13.57 13.15 3.53 27.41 4.02 25.40 19.23 8.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.86 14.96 8.65 0.00 2.07 0.00 10 I1_SR2 SilentIntronRegion 0 0.57 5.55 8.58 11.27 7.05 26.54 7.27 13.57 10.76 6.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 19.30 5.93 0.00 0.73 0.00 11 E2_Aa NovelBoundary 0 0.00 5.53 9.25 12.59 0.00 45.71 6.32 11.05 18.23 6.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 11.95 12.53 0.00 0.00 0.00 12 ER2a ExonRegion 0 0.00 2.92 4.19 8.67 4.82 21.61 10.21 15.40 10.22 8.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 4.23 10.95 0.00 0.80 0.00 13 E2_Ab KnownBoundary 0 0.00 11.71 11.09 19.41 11.97 44.52 23.45 35.69 31.80 24.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 3.95 12.02 0.00 3.12 0.00 14 ER2b ExonRegion 0 3.80 10.89 8.87 17.52 12.20 51.08 11.10 45.04 21.69 20.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 11.34 11.64 0.00 1.84 0.00 15 E2a_E3a KnownJunction 0 7.33 11.51 12.33 18.41 12.05 92.84 6.09 65.92 22.28 25.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 16.09 12.40 0.00 0.00 0.00 16 E3_Aa NovelBoundary 0 28.45 146.88 90.65 124.86 16.98 39.24 24.42 37.34 89.96 13.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.10 39.91 41.29 3.15 0.00 0.00 17 ER3a ExonRegion 0 1.55 3.05 2.69 6.19 3.16 21.18 3.09 26.64 7.59 11.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 2.12 4.05 0.00 0.00 0.00 18 E3_Da KnownBoundary 0 19.86 185.95 130.30 145.74 26.57 86.20 30.91 64.32 138.14 29.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.14 40.85 59.12 0.00 0.00 0.00 19 E3a_E4a KnownJunction 0 0.00 2.70 0.00 3.30 11.80 14.71 1.90 11.62 2.46 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 20 ER3b ExonRegion 0 0.00 0.00 0.49 0.00 0.00 2.28 0.00 2.32 0.76 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 1.45 0.00 0.00 0.00 21 E3_Db NovelBoundary 0 10.00 216.61 130.51 205.63 25.38 148.83 22.48 52.53 134.29 24.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.97 85.08 84.82 0.00 2.45 7.94 22 Ix Intron 0 2.81 11.35 20.13 18.56 9.33 24.18 6.65 27.31 16.56 7.04 0.00 0.00 0.00 0.00 0.00 0.41 0.00 5.57 14.67 17.37 0.00 0.44 0.61 23 Ix_AR1 ActiveIntronRegion 0 2.88 11.90 27.67 25.68 13.14 28.17 7.47 36.88 20.19 8.57 0.00 0.00 0.00 0.00 0.00 0.62 0.00 6.62 15.98 18.90 0.00 0.22 0.31 24 Ix_SR1 SilentIntronRegion 0 2.69 10.33 5.02 4.30 1.70 16.30 5.04 8.16 9.35 3.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.50 12.13 14.41 0.00 0.88 1.24 25 E4_Aa NovelBoundary 0 0.00 12.04 12.24 1.30 8.40 21.29 8.08 2.26 15.89 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 9.60 20.39 0.00 3.12 4.27 26 ER4a ExonRegion 0 2.36 12.37 7.57 7.67 2.60 20.52 4.93 10.92 16.10 8.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.75 8.38 13.53 0.00 0.66 0.94