Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF511 Gene 0 32.64 26.50 71.66 34.55 24.31 28.04 19.13 38.81 25.29 31.28 59.48 19.36 16.00 56.19 75.94 33.40 50.67 48.49 49.13 31.74 40.03 55.16 45.07 2 361518 Transcript 0 2.64 0.59 0.27 0.00 0.83 2.92 1.59 2.39 0.75 1.81 1.30 0.00 0.00 2.27 1.99 0.30 1.59 3.87 1.45 2.16 2.85 0.91 1.81 3 359035 Transcript 0 20.89 16.56 18.60 17.63 15.63 10.66 8.52 16.08 11.97 7.15 6.49 3.27 3.05 6.88 10.91 3.26 1.57 14.46 12.97 10.80 6.57 11.37 9.84 4 482153 Transcript 0 1.00 1.61 9.91 5.05 3.70 7.03 1.62 21.10 16.62 3.20 2.40 2.13 0.93 7.72 3.55 3.53 7.83 16.44 6.21 11.03 2.32 5.28 10.76 5 463816 Transcript 0 3.56 0.00 1.66 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 2.64 0.59 0.27 0.00 0.83 2.92 1.59 2.39 0.75 1.81 1.30 0.00 0.00 2.27 1.99 0.30 1.59 3.87 1.45 2.16 2.85 0.91 1.81 7 E1_Ab KnownBoundary 0 38.90 12.89 5.97 3.93 4.33 48.78 18.37 9.16 3.65 4.00 12.90 0.00 0.00 16.48 13.35 11.19 19.07 16.50 16.75 12.21 11.74 26.09 37.22 8 E1_Ac KnownBoundary 0 26.30 8.62 17.80 0.00 11.12 19.48 21.37 11.62 6.66 14.13 18.53 0.00 0.00 13.77 17.80 11.36 21.13 22.59 27.86 14.83 10.19 2.51 6.91 9 ER1b ExonRegion 1 49.47 8.13 12.25 0.00 9.37 55.70 27.97 11.45 2.93 11.76 37.93 0.00 0.00 38.17 51.50 31.21 34.66 24.71 35.84 20.74 15.15 21.10 39.28 10 ER1c ExonRegion 1 20.50 7.76 24.17 4.85 5.44 27.68 17.08 8.05 5.80 16.74 41.45 0.97 2.23 27.09 41.60 23.70 32.11 18.97 29.34 14.36 22.46 18.57 28.31 11 E1_Da NovelBoundary 0 13.63 6.38 3.67 0.00 4.24 16.35 2.12 4.23 11.08 14.59 9.95 0.00 0.00 14.42 5.69 24.18 8.32 46.05 27.48 13.74 5.93 3.00 23.65 12 E1a_E2a KnownJunction 1 7.04 11.51 78.18 25.47 3.65 16.35 12.45 22.59 5.50 33.50 146.19 6.00 6.82 63.39 90.86 25.21 97.52 45.85 30.40 17.96 54.12 45.07 47.29 13 E2_Aa NovelBoundary 0 0.00 0.00 1.60 3.56 0.00 16.01 0.00 9.32 4.31 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 5.02 0.00 5.43 0.00 0.00 0.00 14 ER2a ExonRegion 1 14.98 9.81 112.59 33.11 14.80 27.04 11.99 29.69 8.74 47.56 131.36 12.73 20.60 98.08 140.06 36.19 95.08 84.13 61.52 47.23 57.47 76.64 65.87 15 E2_Da NovelBoundary 0 0.00 3.35 1.42 4.76 0.00 0.00 0.00 11.75 20.63 1.42 4.95 0.00 0.00 2.41 0.00 3.76 0.00 23.96 4.80 6.14 0.00 0.00 0.00 16 E2a_E3a KnownJunction 0 11.34 18.29 131.60 71.52 27.84 28.17 21.37 50.03 28.47 56.87 129.03 19.66 28.24 92.41 164.78 107.66 61.90 120.13 86.87 48.90 57.82 79.17 125.14 17 E2a_E4a KnownJunction 0 3.56 0.00 1.66 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 18 ER2b ExonRegion 0 12.61 11.58 132.82 49.48 20.71 30.22 12.84 40.81 22.88 58.79 112.95 26.35 26.71 111.43 175.08 82.70 67.02 110.62 91.13 50.79 68.12 87.60 100.48 19 E3_Aa NovelBoundary 0 0.00 0.00 6.50 3.70 0.00 0.00 2.16 24.77 14.64 3.04 9.48 0.00 0.00 4.77 4.45 0.00 0.00 15.59 13.08 24.10 2.35 4.84 0.00 20 ER3a ExonRegion 0 33.25 32.48 202.82 80.85 41.21 72.00 48.68 79.70 46.53 76.33 172.53 50.39 49.99 144.26 204.84 82.57 147.43 136.83 109.20 87.87 107.04 120.18 130.06 21 E3_Da NovelBoundary 0 0.00 5.33 9.67 0.00 3.23 5.39 0.00 17.50 13.80 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.76 0.00 8.88 0.00 0.00 0.00 22 E3a_E4a KnownJunction 1 123.28 50.45 242.54 98.16 43.97 75.98 66.38 84.90 21.06 79.48 201.63 76.22 66.55 147.10 264.79 62.04 239.92 72.29 116.71 106.55 149.87 133.55 113.79 23 E4_Aa NovelBoundary 0 3.78 16.05 6.59 12.99 0.00 10.11 2.03 35.08 13.54 7.36 2.11 0.00 0.00 10.24 9.15 4.10 0.00 38.26 17.51 0.00 0.00 8.39 12.29 24 ER4a ExonRegion 0 130.58 63.30 241.50 95.16 48.66 74.33 46.73 100.93 58.71 108.04 225.10 72.25 70.54 238.16 265.04 138.29 207.19 167.69 166.81 102.20 161.61 198.38 185.83 25 E4_Da KnownBoundary 0 3.78 0.00 16.88 3.13 3.31 10.90 5.96 28.79 24.77 2.69 6.48 5.85 0.00 10.42 9.02 0.00 0.00 21.02 3.58 9.40 5.68 2.45 4.01 26 E4a_E5a KnownJunction 0 113.65 98.34 234.29 106.98 47.45 55.48 75.87 75.08 42.79 115.26 231.95 81.63 139.93 239.74 329.56 143.38 216.08 146.08 149.93 105.59 123.80 178.07 138.03 27 ER4b ExonRegion 0 1.00 1.61 9.91 5.05 3.70 7.03 1.62 21.10 16.62 3.20 2.40 2.13 0.93 7.72 3.55 3.53 7.83 16.44 6.21 11.03 2.32 5.28 10.76 28 E4_Db NovelBoundary 0 6.37 5.33 2.66 4.06 0.00 2.84 2.21 19.35 13.57 1.26 2.68 0.00 0.00 0.00 20.27 4.36 17.02 12.48 4.61 15.15 0.00 13.96 8.54 29 Ix Intron 0 8.97 11.02 8.02 11.63 17.22 15.83 6.75 23.45 15.31 6.17 6.98 15.51 7.16 8.64 5.09 2.80 4.14 7.08 8.50 12.69 1.73 10.63 4.61 30 Ix_AR1 ActiveIntronRegion 0 2.12 4.07 6.13 4.54 12.93 17.12 3.09 27.66 18.73 8.03 6.77 4.33 0.00 6.50 15.96 5.94 0.55 22.17 27.61 29.79 4.41 13.89 13.21 31 Ix_SR2 SilentIntronRegion 0 10.38 12.36 8.86 12.95 19.32 17.50 7.55 25.05 16.21 6.43 7.88 17.85 8.35 9.49 5.14 2.92 4.53 6.72 8.79 12.67 1.64 11.43 4.28 32 E5_Aa NovelBoundary 1 13.93 14.87 18.66 18.35 4.33 17.15 19.03 25.59 26.74 4.27 0.00 5.25 15.10 6.83 8.90 0.00 0.00 13.27 17.69 17.13 15.07 0.00 0.00 33 ER5a ExonRegion 0 26.59 40.69 130.07 52.11 34.11 40.90 43.06 41.61 32.87 72.02 146.59 55.63 26.84 148.37 208.68 69.21 135.76 77.56 93.61 48.89 103.33 135.66 85.77 34 E5_Da KnownBoundary 0 3.33 12.30 17.24 17.01 4.33 2.33 0.00 23.41 23.52 10.07 2.37 0.00 6.66 11.83 4.45 4.10 7.57 14.14 4.24 8.44 16.19 19.66 0.00 35 E5a_E5b KnownJunction 0 23.63 52.89 150.62 62.26 46.26 36.29 53.97 47.03 32.67 85.64 141.93 30.01 12.99 227.68 254.40 90.66 119.03 120.26 122.64 45.70 110.71 169.86 89.63 36 ER5b ExonRegion 0 36.48 32.62 35.66 34.91 24.57 20.87 12.40 32.17 22.71 14.01 8.62 5.45 6.10 9.29 12.39 6.51 3.14 24.75 14.79 21.59 12.05 21.17 13.06 37 E5_Ab KnownBoundary 0 33.12 33.68 68.09 60.66 87.86 20.78 10.95 61.45 50.61 26.59 5.05 0.00 18.51 12.48 9.64 18.80 12.06 51.03 35.20 36.62 20.51 31.78 14.60 38 ER5c ExonRegion 0 63.55 56.43 174.54 64.46 59.04 52.47 41.47 91.72 58.97 77.89 164.80 57.31 39.12 152.82 221.85 101.29 143.38 101.54 157.17 57.64 97.88 160.14 108.74 39 E5_Db KnownBoundary 0 59.79 28.35 81.28 10.45 86.84 26.06 42.44 68.55 44.53 18.94 58.96 11.70 26.30 38.67 39.68 11.19 30.86 45.10 45.18 32.92 27.86 25.47 17.76 40 ER5d ExonRegion 0 27.40 10.44 28.28 4.20 33.66 14.82 20.07 18.92 14.24 5.37 25.94 11.62 9.26 31.97 36.88 2.50 18.59 22.71 25.73 16.18 16.06 12.56 10.05 41 ER5e ExonRegion 0 5.29 0.51 1.53 0.34 6.69 0.46 4.63 0.00 1.24 0.29 4.35 1.08 0.00 4.47 9.43 0.00 0.00 4.16 11.15 0.00 1.10 1.56 6.61 42 IG9 Intergenic 0 0.66 2.36 13.50 6.59 6.21 6.36 1.44 19.48 16.66 4.11 0.08 0.00 0.05 0.05 0.03 0.00 0.09 7.05 8.17 9.46 0.09 0.00 0.33 43 IG9_SR1 SilentIntergenicRegion 0 0.91 3.13 15.91 8.28 8.14 7.90 1.68 25.76 20.28 4.03 0.08 0.00 0.08 0.06 0.05 0.00 0.13 7.88 9.07 12.03 0.13 0.00 0.46