Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PSTK Gene 0 7.47 16.20 7.21 6.63 8.74 17.29 8.65 8.68 11.59 3.87 12.34 9.24 12.90 7.41 8.60 8.75 6.97 10.84 10.45 11.25 5.15 6.30 6.54 2 465232 Transcript 0 2.57 9.38 7.22 3.25 5.08 45.19 8.24 6.79 5.99 1.65 6.40 0.32 0.00 0.02 0.00 0.81 0.00 11.17 10.25 5.01 0.60 0.57 0.53 3 420769 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 368887 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 405485 Transcript 0 4.31 10.74 3.40 5.35 4.18 11.00 5.17 6.29 8.96 2.36 6.51 8.71 14.20 4.09 4.73 3.98 4.25 4.46 5.37 6.23 1.72 3.13 3.83 6 406217 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 483455 Transcript 0 0.00 0.00 6.48 0.00 0.00 0.00 0.00 4.93 4.43 1.61 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 497219 Transcript 0 3.98 9.71 3.71 3.68 6.90 15.21 6.89 10.05 10.33 3.66 10.09 12.10 10.13 8.02 3.77 12.48 5.61 10.32 5.01 10.70 3.28 5.59 3.93 9 493461 Transcript 0 7.74 12.61 5.28 6.20 7.94 10.00 9.71 6.40 9.41 4.02 7.32 5.44 8.94 5.83 7.32 9.63 9.47 11.42 10.46 12.01 5.90 5.63 9.64 10 483755 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 496079 Transcript 0 0.63 1.42 0.00 1.58 0.54 2.94 0.26 0.17 1.53 0.00 0.58 0.00 0.94 0.32 1.16 0.00 0.66 0.00 0.96 0.00 0.00 0.83 0.00 12 488518 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER1a ExonRegion 0 4.29 28.13 8.44 8.00 15.24 108.10 18.32 7.98 8.46 3.39 7.78 0.97 0.00 0.07 0.00 2.42 0.00 20.34 26.25 15.04 1.79 1.70 1.59 14 E1a_E4a KnownJunction 0 3.41 0.00 13.22 1.76 0.00 24.70 0.00 12.40 9.52 1.56 11.42 0.00 0.00 0.00 0.00 0.00 0.00 11.57 4.52 0.00 0.00 0.00 0.00 15 ER2a ExonRegion 0 0.00 0.55 0.50 0.00 0.73 2.99 1.26 0.00 0.00 0.23 0.26 0.00 0.00 0.00 0.00 0.06 0.02 1.88 0.87 0.00 0.60 0.00 0.00 16 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2b ExonRegion 0 0.33 4.16 0.00 0.00 3.47 3.24 3.27 2.32 1.06 0.73 5.86 0.00 3.00 4.16 9.02 5.90 2.53 20.09 4.63 7.11 2.41 3.81 4.54 18 E2_Ac KnownBoundary 0 2.96 8.16 0.00 0.00 4.07 0.00 0.00 4.89 4.51 4.41 10.16 0.00 0.00 2.30 4.45 11.28 0.00 46.76 3.58 10.35 5.93 5.45 3.41 19 ER2c ExonRegion 0 1.64 3.72 0.00 0.00 0.96 5.29 2.40 2.15 1.96 0.76 4.08 0.00 0.09 0.40 6.13 6.67 0.06 16.66 3.61 1.65 3.70 3.34 5.37 20 E2_Ad KnownBoundary 0 0.00 3.35 1.74 0.00 0.00 5.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 4.77 0.00 0.00 6.18 0.00 3.41 21 ER2d ExonRegion 0 1.28 2.99 3.50 2.04 1.97 1.17 0.06 2.89 4.11 0.73 10.84 0.95 1.34 4.65 9.57 4.26 1.13 18.14 3.48 5.06 4.50 4.29 4.03 22 E2a_E3c KnownJunction 0 6.74 20.98 4.46 1.60 12.82 2.50 0.00 0.00 6.05 0.00 12.21 0.00 0.00 4.83 10.01 4.36 0.00 4.73 8.28 8.95 2.84 3.12 3.76 23 E2a_E4a KnownJunction 0 0.00 0.00 6.48 0.00 0.00 0.00 0.00 4.93 4.43 1.61 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 I2 Intron 0 1.72 3.01 1.62 0.90 1.78 1.76 1.67 2.29 2.59 0.51 9.16 8.07 4.47 3.84 0.45 2.20 2.93 5.92 3.77 4.72 1.63 3.08 2.61 25 I2_SR1 SilentIntronRegion 0 1.73 3.02 1.63 0.90 1.79 1.77 1.67 2.29 2.60 0.51 9.18 8.09 4.49 3.85 0.46 2.21 2.94 5.94 3.78 4.74 1.64 3.09 2.62 26 E3_Aa NovelBoundary 0 0.00 2.70 1.48 4.13 0.00 7.10 4.50 0.00 7.44 0.00 15.06 36.76 0.00 7.30 0.00 7.18 4.21 2.32 4.24 14.89 0.00 8.02 0.00 27 ER3a ExonRegion 0 2.66 2.89 0.97 2.64 1.42 6.58 2.44 3.47 3.57 0.60 10.33 9.02 7.41 4.43 1.31 5.11 2.36 2.39 4.74 2.71 0.16 4.13 1.56 28 E3_Ab KnownBoundary 0 7.56 6.64 0.00 1.56 0.00 11.24 2.08 3.61 3.73 1.48 8.84 6.15 7.79 4.94 0.00 8.46 4.30 6.80 0.00 0.00 5.50 2.94 0.00 29 ER3b ExonRegion 0 4.52 5.51 3.78 0.30 2.05 5.75 1.93 3.64 2.75 0.48 11.46 6.33 7.43 7.38 2.25 5.79 0.18 9.01 2.04 3.94 5.45 1.83 2.00 30 E3_Ac KnownBoundary 0 6.59 14.21 7.16 0.00 0.00 2.67 0.00 1.56 9.23 1.24 11.48 7.65 0.00 3.00 4.45 4.36 0.00 7.21 3.76 5.82 5.50 2.57 4.35 31 ER3c ExonRegion 0 18.42 46.56 10.86 7.56 5.22 9.19 4.63 8.19 12.04 1.85 29.39 10.54 9.99 12.18 16.84 5.83 4.36 5.60 7.03 12.62 6.47 10.24 6.22 32 E3_Ad KnownBoundary 0 14.15 44.07 22.86 8.29 3.48 18.85 3.97 20.17 12.36 5.56 36.32 18.01 5.84 26.61 16.94 8.20 8.13 2.11 3.67 23.20 8.09 24.92 7.60 33 ER3d ExonRegion 0 12.98 33.91 20.72 12.88 9.53 16.93 4.97 12.23 9.77 6.95 28.69 13.47 17.18 20.22 30.53 9.89 6.45 4.52 11.85 14.65 8.40 15.68 5.52 34 E3_Da NovelBoundary 0 3.70 19.34 0.00 1.80 3.14 11.13 6.23 0.00 0.00 2.47 5.21 0.00 0.00 0.00 4.45 0.00 0.00 0.00 7.15 3.26 0.00 3.12 0.00 35 E3a_E4a KnownJunction 0 17.26 14.54 13.45 5.16 3.31 5.68 4.24 13.23 4.89 6.85 34.85 6.30 28.24 7.65 10.38 0.00 0.00 4.60 4.52 15.21 20.51 11.33 4.35 36 E4_Ab NovelBoundary 0 22.30 43.87 18.63 9.62 3.82 15.33 4.06 5.75 8.54 10.42 23.74 6.30 26.30 14.13 5.19 7.43 0.00 4.56 8.94 11.31 8.59 11.21 0.00 37 ER4a ExonRegion 0 17.04 32.22 33.28 11.62 4.93 24.61 4.95 22.65 17.55 11.47 41.71 8.43 32.09 14.87 19.09 5.01 0.00 14.30 9.22 15.57 20.76 15.35 3.25 38 ER4b ExonRegion 0 18.10 60.60 38.53 19.63 15.68 23.74 17.46 24.54 32.06 12.75 41.60 25.94 33.80 29.06 39.19 17.74 8.28 28.38 45.16 29.31 22.68 15.32 12.51 39 E4_Ac KnownBoundary 0 40.90 62.23 40.36 21.51 16.47 46.51 20.18 28.83 38.28 11.39 34.80 24.76 46.43 21.78 43.64 15.81 11.97 45.93 63.81 32.79 33.61 30.07 12.38 40 ER4c ExonRegion 0 22.94 38.03 28.97 13.96 22.16 84.06 17.64 26.13 29.72 15.30 51.03 11.60 20.35 21.24 46.36 19.26 5.41 27.24 50.46 25.40 21.99 14.96 5.64 41 E4_Da KnownBoundary 0 3.70 8.95 3.25 1.83 8.49 19.02 4.06 8.50 3.10 1.67 9.69 0.00 18.83 2.47 4.45 8.12 0.00 12.85 4.80 8.88 8.96 0.00 0.00 42 E4a_E5a KnownJunction 0 31.41 26.84 29.74 13.98 32.43 84.38 17.36 25.26 24.04 15.53 37.11 0.00 0.00 11.83 14.46 7.69 0.00 15.25 52.33 6.20 14.52 8.02 10.93 43 E4a_E6a NovelJunction 0 0.00 2.63 1.83 0.00 0.00 0.00 0.00 0.00 1.56 0.00 2.32 0.00 0.00 0.00 12.11 0.00 0.00 1.78 0.00 0.00 0.00 0.00 0.00 44 ER4d ExonRegion 0 0.05 8.23 2.95 1.46 2.49 13.63 5.60 2.71 5.50 2.92 3.69 0.00 6.50 4.02 1.65 4.59 0.75 13.35 2.17 3.43 5.11 0.14 0.00 45 E4_Db KnownBoundary 0 0.00 3.35 2.66 1.80 0.00 5.00 6.27 0.00 8.36 3.17 0.00 0.00 0.00 7.36 0.00 0.00 3.83 9.24 0.00 3.13 3.15 0.00 0.00 46 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.78 6.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 47 ER4e ExonRegion 0 7.74 12.61 5.28 6.20 7.94 10.00 9.71 6.40 9.41 4.02 7.32 5.44 8.94 5.83 7.32 9.63 9.47 11.42 10.46 12.01 5.90 5.63 9.64 48 E4c_E8a NovelJunction 0 147.21 77.95 16.68 17.55 110.27 53.04 74.94 16.76 17.16 20.04 13.90 16.51 29.06 23.84 22.75 28.62 31.60 18.45 24.47 30.87 14.27 25.17 34.57 49 E5_Aa NovelBoundary 0 8.22 14.54 7.01 11.39 0.00 34.64 2.16 0.00 5.35 0.00 7.63 0.00 8.12 7.77 0.00 3.16 4.21 6.55 0.00 0.00 2.47 2.88 0.00 50 ER5a ExonRegion 0 24.79 67.46 32.89 21.97 63.41 167.94 31.67 28.59 40.74 14.02 52.11 24.89 28.88 20.15 38.14 13.92 12.99 15.92 45.73 37.12 13.11 13.95 20.79 51 E5_Da KnownBoundary 0 3.78 8.88 5.03 3.70 0.00 7.89 0.00 4.11 7.23 0.00 4.79 12.30 0.00 4.65 0.00 0.00 8.32 4.15 4.80 8.69 3.09 0.00 0.00 52 E5a_E5b KnownJunction 0 6.74 62.29 34.68 11.72 24.87 140.60 13.65 19.43 39.67 15.69 37.17 18.31 20.94 15.36 54.02 13.93 8.04 12.60 32.85 17.90 5.44 14.27 12.29 53 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER5b ExonRegion 0 4.59 11.94 2.59 4.19 3.98 8.79 5.07 4.87 6.72 2.32 5.22 2.88 6.52 3.57 3.76 3.71 4.53 3.82 4.44 4.66 1.22 1.53 2.81 55 E5_Ab KnownBoundary 0 3.56 21.64 6.74 10.35 3.57 5.05 12.45 8.50 8.01 0.00 5.16 0.00 26.62 6.71 0.00 0.00 0.00 4.44 4.05 11.57 2.66 0.00 8.19 56 ER5c ExonRegion 0 13.04 65.07 29.26 23.95 29.63 51.68 13.74 27.54 41.86 11.99 54.58 23.98 53.91 19.79 43.05 17.74 7.42 15.99 30.93 32.97 6.82 15.14 8.34 57 E5_Db KnownBoundary 0 0.00 8.16 0.00 3.90 0.00 13.46 0.00 0.00 4.75 0.00 2.53 0.00 6.17 0.00 0.00 3.33 4.68 2.20 0.00 2.81 2.59 2.94 0.00 58 E5b_E5c KnownJunction 0 0.00 3.35 1.74 0.00 8.66 11.81 0.00 8.83 1.33 0.00 11.58 0.00 0.00 2.47 0.00 8.37 0.00 7.83 0.00 0.00 0.00 2.82 0.00 59 E5b_E6a KnownJunction 0 9.93 10.85 34.24 14.62 3.99 23.96 1.94 27.27 23.23 11.36 33.64 19.36 26.13 14.30 24.97 19.57 13.18 11.98 39.25 10.23 0.00 3.00 4.01 60 E5b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E5_Dc KnownBoundary 0 3.11 3.03 1.21 1.37 2.97 4.71 3.97 9.61 6.92 1.10 0.00 7.50 0.00 0.00 0.00 3.25 0.00 3.48 0.00 5.94 2.47 0.00 0.00 62 ER5d ExonRegion 0 2.12 14.24 3.68 5.45 2.68 16.50 2.65 13.83 9.88 2.29 9.66 4.33 14.07 4.87 0.00 5.94 3.30 5.54 6.37 12.77 4.41 4.17 0.00 63 ER5e ExonRegion 0 4.03 9.55 4.20 6.51 4.39 13.21 5.28 7.71 11.20 2.40 7.81 14.54 21.88 4.61 5.69 4.24 3.96 5.11 6.30 7.80 2.23 4.74 4.86 64 E5_Ac KnownBoundary 0 0.00 15.92 10.17 6.96 0.00 13.69 5.61 6.33 21.82 2.87 4.95 0.00 12.99 2.41 4.45 11.19 4.58 11.23 4.71 6.52 2.90 14.45 0.00 65 ER5f ExonRegion 0 5.04 8.19 3.29 4.73 8.81 11.19 3.38 8.65 12.47 3.66 20.81 11.61 10.84 10.29 9.69 8.04 4.58 10.79 6.39 7.33 5.29 4.71 5.29 66 E5_Dd NovelBoundary 0 19.86 14.47 5.29 6.03 4.24 27.37 2.21 4.72 12.79 2.87 9.53 6.30 6.82 2.47 4.45 8.63 4.49 19.52 3.95 9.78 5.31 5.57 0.00 67 E5d_E6a KnownJunction 0 0.00 2.70 0.00 3.23 0.00 0.00 0.00 5.96 3.10 1.67 17.06 13.20 0.00 0.00 18.54 3.25 0.00 9.12 0.00 3.26 3.03 0.00 0.00 68 I5_AR1 ActiveIntronRegion 0 10.44 20.53 12.16 12.96 18.31 16.86 6.46 13.83 11.59 3.05 8.76 10.58 11.12 3.99 7.44 2.72 4.79 2.94 3.40 7.80 1.35 4.96 2.08 69 E6_Aa NovelBoundary 0 0.00 3.22 10.97 13.22 3.65 13.91 3.58 14.46 33.22 6.29 10.16 5.70 6.66 2.47 4.82 0.00 0.00 4.60 0.00 16.81 2.47 5.45 0.00 70 ER6a ExonRegion 0 11.55 23.10 26.31 20.22 20.99 34.11 10.99 20.92 34.77 11.29 33.24 24.69 18.93 7.66 25.22 11.25 9.80 11.47 29.73 15.83 4.43 8.85 2.21 71 E6_Da KnownBoundary 0 28.30 38.61 25.72 23.41 32.17 35.21 6.40 24.27 30.82 7.28 15.37 6.45 12.82 11.89 30.16 0.00 0.00 10.53 18.35 15.08 2.78 2.39 3.50 72 ER6b ExonRegion 0 25.32 46.22 15.66 14.25 28.80 61.28 6.86 14.42 18.06 5.78 20.35 10.47 28.57 8.06 20.31 14.00 15.24 7.49 30.35 8.97 4.61 3.52 0.00 73 E6d_E7a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 4.77 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 E6d_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 8.35 0.00 2.01 3.39 4.78 0.00 6.30 0.00 0.00 4.82 7.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 ER6c ExonRegion 0 1.06 7.12 3.68 2.73 8.03 20.17 3.31 5.19 6.79 3.44 1.93 4.33 4.69 3.25 2.90 0.00 0.00 1.85 0.00 2.13 1.10 2.08 0.00 76 ER6d ExonRegion 0 0.42 0.68 2.61 2.09 1.78 12.47 2.65 3.46 6.09 3.44 1.03 4.33 2.19 1.95 2.90 4.36 0.44 0.37 0.00 1.56 0.00 2.08 0.00 77 E7_Aa NovelBoundary 0 116.17 190.56 63.01 51.91 133.70 216.35 87.22 93.28 123.64 33.87 213.95 361.32 450.30 205.37 102.36 150.56 202.43 96.59 41.70 106.61 96.06 133.24 111.83 78 ER7a ExonRegion 0 14.52 27.16 10.22 11.53 13.05 16.75 17.47 17.23 28.32 5.55 15.36 35.28 55.03 10.18 8.09 10.75 14.28 6.65 5.15 9.62 3.98 19.94 6.90 79 E7_Da NovelBoundary 0 3.04 20.65 1.18 5.16 10.87 9.31 4.02 11.67 16.12 1.32 10.90 15.30 39.93 5.47 5.56 11.02 0.00 6.38 0.00 2.43 2.41 5.14 0.00 80 E7_Db NovelBoundary 0 25.04 9.34 4.58 3.96 4.24 0.00 3.75 9.94 16.84 2.87 2.68 6.30 27.27 4.53 0.00 11.45 0.00 0.00 0.00 5.50 0.00 14.08 3.24 81 ER7b ExonRegion 0 1.27 2.85 0.00 1.09 1.07 1.10 0.53 0.35 1.73 0.00 1.16 0.00 1.88 0.65 2.32 0.00 1.32 0.00 1.91 0.00 0.00 1.67 0.00 82 Ix Intron 0 11.31 11.77 8.50 6.26 12.96 12.92 13.15 11.66 19.33 5.48 14.59 16.50 22.02 7.20 3.66 12.34 12.04 14.45 7.81 10.44 5.27 15.21 9.60 83 Ix_AR1 ActiveIntronRegion 0 10.69 10.27 6.15 4.89 13.52 12.79 15.29 10.53 14.61 5.35 5.58 21.69 29.82 4.80 2.18 5.00 5.56 3.55 5.36 7.17 1.06 18.54 5.65 84 Ix_AR2 ActiveIntronRegion 0 9.55 8.39 7.07 10.26 8.24 16.43 14.34 11.32 23.42 6.51 16.93 16.30 23.64 7.63 2.93 8.37 14.34 10.62 3.49 10.87 6.64 13.02 13.16 85 Ix_AR3 ActiveIntronRegion 0 13.11 15.00 10.59 5.35 15.87 12.08 11.86 12.56 20.86 5.18 19.09 13.66 17.89 8.57 5.13 18.41 15.23 23.12 11.75 12.90 6.97 15.39 10.84 86 Ix Intron 0 15.55 26.27 8.18 12.00 16.26 19.97 18.78 22.84 23.16 5.20 19.42 20.45 41.65 14.12 8.72 15.06 16.44 11.41 5.65 14.73 5.76 16.01 9.43 87 Ix_AR1 ActiveIntronRegion 0 10.35 23.70 7.56 14.84 17.30 16.95 25.68 11.20 13.00 5.36 10.80 15.11 57.69 13.07 9.12 7.63 15.77 8.62 4.35 10.61 6.00 8.43 0.62 88 Ix_SR1 SilentIntronRegion 0 15.17 23.10 8.06 9.09 15.36 23.60 17.29 15.63 14.94 6.20 12.21 15.92 36.01 12.59 7.48 9.88 11.34 9.36 7.32 12.54 3.13 11.98 8.37 89 Ix_AR2 ActiveIntronRegion 0 17.09 28.46 8.41 12.65 16.46 19.15 17.75 29.17 29.58 4.70 24.98 23.95 40.25 15.13 9.21 19.37 19.00 13.10 5.23 16.83 6.92 19.83 12.19 90 E8_Aa NovelBoundary 0 33.19 51.90 9.14 18.71 36.42 37.59 44.52 39.06 28.01 10.45 24.37 11.85 32.47 19.37 0.00 43.41 21.51 35.03 0.00 23.59 3.03 28.29 15.71 91 ER8a ExonRegion 0 9.28 26.26 10.16 8.39 19.29 30.71 18.24 24.68 24.04 5.60 19.93 20.98 22.98 19.63 5.17 25.16 14.47 28.58 10.28 29.37 9.67 12.64 10.24