Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 STK32C Gene 0 10.36 12.03 56.35 11.93 8.65 79.82 8.84 27.36 20.58 12.84 5.96 5.17 1.28 6.92 4.83 5.75 7.83 24.27 49.97 30.52 17.57 11.90 12.85 2 431563 Transcript 0 0.53 0.00 0.00 0.00 0.67 0.92 0.66 0.00 0.31 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 478542 Transcript 0 1.14 0.22 1.39 0.78 0.01 4.07 0.13 1.78 0.56 0.28 0.01 0.03 0.00 0.16 0.49 0.12 0.01 0.96 1.89 0.63 0.57 0.05 0.87 4 368620 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 368625 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 456004 Transcript 0 12.64 7.59 27.45 10.51 9.81 11.15 6.26 10.75 9.10 3.19 18.13 7.12 4.48 7.52 7.89 10.20 11.35 8.44 29.44 16.08 8.87 3.23 2.91 7 368619 Transcript 0 9.41 5.40 6.32 2.71 9.70 20.20 7.23 18.51 13.34 4.32 8.82 7.85 1.71 10.80 4.62 11.96 8.38 14.57 14.86 6.39 12.18 8.43 6.51 8 298630 Transcript 0 1.60 6.50 22.63 5.23 0.74 32.78 5.50 19.64 12.89 7.68 0.27 0.33 0.00 1.71 0.00 0.00 3.43 12.82 24.44 29.85 14.72 9.41 5.28 9 368622 Transcript 0 0.00 0.35 0.32 0.18 0.00 0.48 0.00 0.22 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.55 0.36 0.00 0.00 0.51 10 462160 Transcript 0 0.89 0.00 2.78 2.25 2.46 5.28 1.32 2.74 1.99 0.71 0.00 0.00 0.00 0.53 0.02 0.00 0.00 0.63 8.93 3.00 0.31 1.51 0.00 11 ER1a ExonRegion 0 0.53 0.00 0.00 0.00 0.67 0.92 0.66 0.00 0.31 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1b ExonRegion 0 5.29 0.00 0.00 0.00 2.68 7.34 3.97 2.59 1.24 1.15 0.00 0.00 0.00 2.44 1.45 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 13 ER1c ExonRegion 0 8.47 0.00 0.37 0.00 8.03 16.32 5.30 5.19 1.61 1.15 0.00 0.00 0.00 4.87 3.19 0.30 0.00 0.00 0.32 4.68 2.20 2.08 2.94 14 ER1d ExonRegion 0 14.82 0.34 5.11 0.00 8.47 21.39 6.62 6.34 2.47 2.29 2.90 0.00 0.00 8.12 8.22 4.46 3.30 0.31 3.72 6.74 2.57 2.08 2.94 15 ER1e ExonRegion 0 13.48 5.92 21.91 6.95 8.58 26.88 12.22 19.96 13.92 7.26 16.18 3.40 0.87 15.17 12.22 16.19 17.21 23.01 35.37 18.58 23.65 6.67 10.66 16 E1_Da KnownBoundary 0 6.67 11.38 54.29 15.92 4.07 37.02 6.76 15.53 17.22 12.06 22.74 12.45 0.00 38.38 46.97 39.31 15.90 40.04 68.24 60.27 31.07 10.35 30.82 17 E1a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER1f ExonRegion 0 8.05 7.39 39.45 13.86 21.13 52.44 16.67 28.44 26.52 12.81 38.34 26.38 8.08 37.29 31.93 21.70 19.72 33.80 40.49 28.42 32.73 9.44 8.27 19 E1_Db NovelBoundary 0 7.04 24.93 25.87 8.56 0.00 8.46 7.55 20.29 18.89 19.21 5.05 20.26 0.00 38.67 40.67 24.78 8.70 9.24 8.09 20.45 7.17 3.12 8.45 20 E1b_E2a KnownJunction 0 0.00 0.00 25.43 1.40 3.48 7.15 0.00 4.03 6.54 0.00 9.74 0.00 0.00 0.00 0.00 8.63 7.85 2.57 26.17 9.78 8.83 2.39 0.00 21 E1b_E3a KnownJunction 0 12.67 2.50 12.42 4.63 4.33 16.18 14.57 21.65 10.04 1.58 15.69 0.00 0.00 7.00 4.33 7.35 0.00 5.64 8.38 5.43 22.67 13.53 3.41 22 E1b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.16 0.00 1.77 4.20 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 6.18 0.00 0.00 2.84 2.33 0.00 23 I1 Intron 0 19.16 14.02 16.79 11.96 12.69 10.80 9.51 10.73 7.93 7.37 7.78 16.57 3.33 18.47 12.11 18.36 5.22 10.17 14.64 7.64 5.70 2.10 4.22 24 I1_AR1 ActiveIntronRegion 0 13.46 9.80 22.61 16.76 9.38 10.01 7.32 12.05 12.56 11.30 9.05 12.55 5.24 20.61 15.91 22.69 5.37 15.21 18.86 12.12 5.87 2.44 6.05 25 I1_SR1 SilentIntronRegion 0 25.86 19.00 10.36 6.64 16.61 11.84 12.12 9.35 2.75 2.97 6.41 21.33 1.19 16.26 7.93 13.65 5.10 4.54 10.02 2.63 5.57 1.73 2.19 26 E2_Aa NovelBoundary 0 18.45 6.71 53.07 47.21 27.42 21.75 32.11 31.18 19.39 4.67 12.79 0.00 0.00 5.65 6.30 29.31 12.81 10.28 40.19 36.82 0.00 8.51 3.76 27 ER2a ExonRegion 0 25.27 15.18 29.46 19.61 16.15 15.14 12.52 17.48 11.66 6.38 26.52 14.23 8.97 15.04 15.78 11.77 14.85 14.30 32.72 22.38 8.90 4.07 5.82 28 E2_Da NovelBoundary 0 22.74 0.00 14.46 9.79 11.12 37.25 26.37 15.12 16.17 6.29 2.16 13.50 0.00 4.59 4.45 20.59 0.00 4.68 4.14 18.15 3.03 3.12 30.56 29 I2_AR1 ActiveIntronRegion 0 6.39 6.92 7.76 10.51 19.96 9.22 12.23 9.99 7.72 6.08 2.73 5.29 3.63 5.55 5.12 4.89 4.30 11.18 10.11 7.27 3.24 4.29 7.42 30 E3_Aa NovelBoundary 0 13.48 3.29 0.00 6.46 12.14 2.38 10.55 13.80 9.66 7.79 0.00 5.40 0.00 7.77 0.00 8.20 0.00 6.09 9.60 9.20 0.00 5.63 8.45 31 ER3a ExonRegion 0 14.59 2.14 10.63 5.72 6.82 22.03 10.23 21.35 18.82 7.94 14.65 10.79 3.52 17.89 9.55 11.10 5.05 12.41 17.91 10.03 24.51 7.84 7.07 32 E3_Da KnownBoundary 0 33.64 8.49 6.24 5.56 0.00 32.65 4.37 33.11 16.29 7.68 16.32 6.30 8.28 7.18 13.35 19.05 4.11 23.63 55.34 8.37 16.43 11.21 6.91 33 ER3b ExonRegion 0 9.41 5.40 6.32 2.71 9.70 20.20 7.23 18.51 13.34 4.32 8.82 7.85 1.71 10.80 4.62 11.96 8.38 14.57 14.86 6.39 12.18 8.43 6.51 34 E3_Db NovelBoundary 0 33.78 0.00 12.63 4.86 4.33 26.12 21.68 13.51 12.27 5.16 2.68 6.30 0.00 9.18 18.91 7.69 26.09 15.30 21.84 10.29 32.12 11.51 11.18 35 ER4a ExonRegion 0 0.24 1.55 9.47 1.34 1.48 12.64 1.15 2.73 2.93 2.59 0.53 0.66 0.00 0.95 0.00 0.00 2.09 2.63 12.64 8.82 6.58 3.99 2.87 36 E4a_E7a KnownJunction 0 2.96 11.45 35.78 9.12 0.00 52.92 9.85 36.56 22.86 12.76 0.00 0.00 0.00 2.47 0.00 0.00 4.77 23.01 36.24 50.88 22.86 14.82 7.68 37 ER5a ExonRegion 0 0.00 0.71 0.64 0.36 0.00 0.96 0.00 0.45 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 1.10 0.72 0.00 0.00 1.02 38 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER6a ExonRegion 0 0.00 0.00 0.02 0.86 1.73 0.02 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 1.16 1.53 0.00 0.00 40 E6a_E7a KnownJunction 0 0.00 0.00 1.57 1.90 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 2.49 0.00 0.00 0.00 41 ER7a ExonRegion 0 1.59 20.08 80.26 12.78 4.16 93.03 9.22 44.66 23.84 21.57 0.07 4.95 0.00 2.41 1.76 0.00 7.60 29.99 53.01 49.28 25.54 15.96 6.97 42 E7a_E8a KnownJunction 0 6.37 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 1.91 4.80 0.00 5.81 0.00 0.00 43 E7a_E8c KnownJunction 0 3.63 17.63 134.59 13.92 7.98 127.09 7.51 56.44 23.12 22.00 0.00 6.30 0.00 2.41 4.45 0.00 12.90 23.71 76.80 65.83 28.97 30.49 11.61 44 E8_Aa NovelBoundary 0 6.96 2.57 11.92 1.27 0.00 0.00 0.00 1.56 1.71 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.29 8.44 0.00 0.00 3.84 45 ER8a ExonRegion 0 0.00 0.00 1.23 0.00 0.00 2.41 0.00 0.00 0.13 0.06 0.00 0.00 0.00 0.00 0.00 0.00 3.30 1.85 3.86 3.92 4.87 2.08 0.77 46 ER8b ExonRegion 0 2.61 2.27 6.64 0.63 1.00 16.72 0.37 4.58 4.80 1.76 0.04 0.10 0.00 1.28 0.13 0.07 1.00 3.14 2.74 13.66 6.20 5.04 4.23 47 E8_Ac KnownBoundary 0 7.33 2.83 7.33 3.20 3.65 22.83 0.00 6.65 6.60 1.67 0.00 0.00 0.00 4.77 0.00 0.00 0.00 1.87 3.76 18.02 2.84 10.96 3.84 48 ER8c ExonRegion 0 7.37 14.26 138.07 21.85 18.98 199.23 13.54 64.24 39.23 30.58 3.51 4.50 0.00 6.01 3.21 1.99 12.26 56.20 114.36 83.51 31.38 31.34 31.06 49 E8a_E9a KnownJunction 0 0.00 12.76 165.61 24.47 10.61 164.28 6.14 77.75 42.51 28.96 5.05 5.85 0.00 12.30 4.45 0.00 13.37 85.27 252.24 99.84 28.17 31.23 38.41 50 ER9a ExonRegion 0 3.54 17.58 159.70 27.39 7.17 118.70 10.30 68.65 48.70 32.41 5.58 12.41 1.32 5.07 4.38 5.84 9.37 62.23 139.51 91.05 35.30 35.31 33.29 51 E9_Da NovelBoundary 0 3.41 20.06 121.02 17.65 7.47 135.89 11.88 40.38 34.92 25.89 2.00 18.61 0.00 2.18 4.45 3.50 0.00 47.38 87.63 46.60 26.69 20.94 26.55 52 E9b_E10a KnownJunction 0 21.26 18.55 146.03 20.54 17.91 167.57 26.28 41.57 34.95 22.11 2.68 15.30 6.82 4.94 0.00 0.00 4.68 57.08 160.66 55.86 22.98 33.92 55.06 53 ER9b ExonRegion 0 11.77 19.77 165.43 21.81 10.60 147.51 16.10 50.47 42.04 27.62 2.32 16.97 2.06 4.16 1.51 1.90 3.30 68.88 136.72 56.00 29.09 28.00 41.47 54 ER10a ExonRegion 0 16.99 31.84 206.41 37.34 25.07 292.44 24.08 73.91 51.32 27.59 3.00 11.39 3.83 9.36 3.05 7.74 7.82 65.79 233.62 95.86 26.73 35.04 49.07 55 E10a_E11a KnownJunction 0 20.37 54.66 202.42 42.05 45.16 517.94 23.14 82.44 51.16 26.78 2.68 15.15 0.00 9.89 8.90 11.96 9.16 57.21 276.62 128.47 31.69 37.41 42.85 56 ER11a ExonRegion 0 15.64 25.33 144.29 30.54 15.94 277.96 15.87 63.70 42.46 27.33 3.24 9.24 0.00 3.65 2.00 13.18 9.57 55.64 133.25 78.18 26.25 28.87 32.11 57 E11_Da KnownBoundary 0 3.56 0.00 0.00 1.80 0.00 2.73 0.00 3.70 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 7.91 0.00 3.15 0.00 4.18 58 E11a_E11b KnownJunction 0 38.08 26.38 107.33 24.21 11.46 208.35 16.91 59.35 31.45 26.92 4.79 19.51 0.00 5.47 6.30 12.73 8.42 60.36 122.07 76.32 24.59 32.27 48.66 59 ER11b ExonRegion 0 1.31 0.66 2.32 0.98 0.04 4.87 0.40 5.33 1.67 0.83 0.02 0.09 0.00 0.48 0.03 0.36 0.03 2.88 5.67 1.90 1.71 0.16 2.60 60 E11_Ab KnownBoundary 0 3.78 0.00 1.71 0.00 0.00 12.78 0.00 7.93 2.89 2.47 0.00 0.00 0.00 2.47 0.00 4.27 0.00 1.99 9.41 2.88 0.00 0.00 7.85 61 ER11c ExonRegion 0 11.06 18.60 77.50 15.16 8.55 139.42 6.99 36.20 27.59 15.50 1.33 9.42 1.91 3.78 3.58 4.07 7.50 30.14 92.50 41.35 19.51 21.46 20.13 62 E11_Db NovelBoundary 0 0.00 5.85 4.38 0.00 0.00 5.28 2.16 2.51 1.50 2.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 26.07 0.00 0.00 0.00 0.00 63 E11b_E12a KnownJunction 0 3.70 22.04 119.57 27.80 4.33 145.09 12.14 40.54 45.69 36.80 0.00 0.00 0.00 2.12 0.00 4.27 13.56 39.84 93.09 40.78 17.36 25.53 22.02 64 ER12a ExonRegion 0 17.87 23.31 113.54 19.48 17.29 185.43 11.78 62.27 42.50 27.90 0.00 4.29 0.00 1.93 0.00 8.56 11.91 54.78 93.36 63.41 25.69 22.33 29.97 65 E12a_E13a KnownJunction 0 24.52 12.30 131.90 28.70 55.43 289.04 13.38 82.27 38.31 33.15 0.00 6.15 0.00 2.41 0.00 8.03 8.60 66.24 120.29 72.93 39.04 20.33 51.13 66 ER13a ExonRegion 0 14.24 14.12 104.66 22.41 9.05 146.88 11.95 48.75 33.47 23.55 0.00 3.44 0.00 6.08 1.66 6.82 12.02 40.30 96.12 48.38 27.65 19.05 18.88 67 E13a_E14a KnownJunction 0 21.26 28.74 135.92 32.73 20.20 255.31 22.57 66.21 30.53 39.06 0.00 0.00 0.00 2.47 0.00 4.02 29.36 46.34 192.85 76.13 35.03 20.45 31.84 68 ER14a ExonRegion 0 20.54 28.53 123.24 27.96 11.37 223.78 23.12 52.68 34.55 36.50 0.75 1.44 0.00 5.38 1.52 5.25 9.93 38.90 101.93 47.79 29.52 21.59 25.83 69 E14a_E15a KnownJunction 0 0.00 0.00 2.63 1.76 0.00 5.05 0.00 0.00 1.39 0.00 0.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 8.66 2.49 0.00 3.12 0.00 70 E14a_E16a KnownJunction 0 41.86 46.70 188.14 42.02 11.29 275.64 27.65 70.07 43.20 37.39 0.00 0.00 0.00 2.94 0.00 0.00 13.74 40.91 113.89 50.49 24.96 33.00 34.74 71 ER15a ExonRegion 0 4.44 0.00 4.83 2.92 1.91 11.76 3.86 7.70 3.33 2.26 0.00 0.00 0.00 0.53 0.12 0.00 0.00 0.77 9.47 2.80 0.00 1.82 0.00 72 E15a_E16a KnownJunction 0 0.00 0.00 4.88 3.83 8.66 9.54 0.00 6.00 5.21 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 18.82 6.07 0.00 2.63 0.00 73 ER16a ExonRegion 0 27.89 48.72 157.14 34.43 24.59 287.80 14.04 52.92 40.43 39.65 1.79 2.29 0.00 9.46 2.60 0.48 12.77 42.58 84.51 69.37 36.81 21.05 10.58 74 E16a_E17a KnownJunction 0 37.19 35.72 145.86 27.50 41.17 365.19 22.96 37.58 44.01 36.10 5.26 0.00 0.00 12.07 4.45 4.10 26.09 51.28 70.12 60.79 37.19 14.82 20.49 75 ER17a ExonRegion 0 15.99 20.53 75.99 13.36 8.64 105.06 10.19 30.16 28.92 14.27 1.01 1.95 0.00 3.99 2.90 3.18 7.59 28.70 54.10 35.26 20.51 13.49 16.31 76 ER17b ExonRegion 0 2.12 0.00 1.84 1.36 0.00 7.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00