Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C10orf125 Gene 0 12.88 1.06 16.01 4.23 7.39 3.01 7.58 5.46 5.09 2.39 24.37 3.72 6.73 30.19 46.82 23.68 41.62 1.91 8.54 3.15 10.85 26.94 31.27 2 368552 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 278025 Transcript 0 1.94 0.19 5.84 2.98 1.33 0.03 3.64 1.76 0.44 0.65 13.33 0.78 1.90 14.65 22.01 11.61 9.75 0.20 0.58 2.95 8.05 13.00 14.81 4 465384 Transcript 0 0.62 0.00 3.15 0.00 0.33 0.00 0.35 0.32 0.07 0.01 0.56 0.02 0.90 0.68 5.01 0.04 1.25 0.00 0.02 0.26 0.95 0.62 1.42 5 447176 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 368551 Transcript 0 0.67 0.64 1.21 0.00 2.12 0.58 2.28 0.00 0.00 0.00 0.57 0.00 0.00 4.48 3.96 3.74 2.03 0.00 0.00 0.00 0.00 0.00 4.55 7 478895 Transcript 0 8.11 1.43 8.90 1.64 2.05 0.43 3.75 0.60 0.00 1.60 7.10 3.34 0.90 9.97 12.92 7.93 10.96 1.14 6.39 3.36 4.06 7.71 10.62 8 ER1a ExonRegion 1 21.76 0.16 2.79 1.96 15.31 2.49 14.88 1.38 7.02 0.32 19.72 0.00 0.00 7.60 41.31 21.64 34.33 1.55 11.98 2.55 5.02 14.58 25.61 9 E1_Ac KnownBoundary 0 141.95 2.76 9.22 5.06 93.38 12.49 64.57 5.75 23.73 3.47 120.93 16.36 5.84 50.39 176.77 125.95 196.07 5.84 52.14 8.37 25.02 61.91 137.52 10 ER1b ExonRegion 1 79.16 2.03 6.13 4.09 53.25 14.12 48.46 6.40 19.51 2.98 93.75 0.00 1.88 38.33 121.27 100.16 149.86 5.54 38.22 6.38 22.48 53.13 107.48 11 ER1c ExonRegion 0 48.87 1.17 5.41 3.79 30.69 12.84 29.38 6.25 18.00 4.39 54.49 1.27 3.38 25.34 51.71 63.42 86.41 5.52 25.25 2.91 16.33 35.39 76.27 12 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E3b KnownJunction 0 18.82 0.00 1.63 1.83 0.00 2.90 1.81 2.38 4.25 1.07 4.21 11.85 6.82 7.59 14.71 10.60 13.00 2.36 3.58 0.00 0.00 5.20 10.33 14 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2a ExonRegion 0 1.33 1.28 0.59 0.00 0.00 1.15 0.49 0.00 0.00 0.00 1.15 0.00 0.00 1.66 3.47 7.49 0.41 0.00 0.00 0.00 0.00 0.00 4.75 16 E2a_E3b KnownJunction 0 0.00 0.00 1.83 0.00 4.24 0.00 4.06 0.00 0.00 0.00 0.00 0.00 0.00 7.30 4.45 0.00 3.65 0.00 0.00 0.00 0.00 0.00 4.35 17 ER3a ExonRegion 0 1.23 0.00 6.30 0.01 0.66 0.01 0.69 0.64 0.14 0.01 1.12 0.04 1.80 1.36 10.03 0.07 2.51 0.01 0.03 0.52 1.91 1.23 2.84 18 E3_Ab KnownBoundary 0 0.00 0.00 14.07 0.00 0.00 0.00 0.00 0.00 1.42 0.00 2.37 0.00 6.01 0.00 5.44 0.00 0.00 0.00 0.00 0.00 3.15 3.00 3.59 19 ER3b ExonRegion 0 21.20 0.00 21.75 2.28 0.00 2.94 4.93 1.98 7.56 2.29 34.22 20.56 8.62 20.01 44.88 18.14 36.31 1.33 1.26 2.13 9.56 11.95 17.92 20 E3a_E4a KnownJunction 1 18.23 0.00 24.33 7.09 0.00 2.61 6.49 6.82 19.82 5.64 75.49 0.00 0.00 34.14 64.03 18.20 76.76 0.00 4.42 9.14 33.42 25.78 16.13 21 E4_Ab NovelBoundary 1 6.00 0.00 25.01 9.36 0.00 0.00 3.97 9.28 18.98 5.99 95.81 5.70 6.66 32.96 72.93 29.99 151.29 0.00 19.29 5.43 37.25 26.21 52.07 22 ER4a ExonRegion 1 13.40 0.00 28.18 7.50 0.00 2.24 5.44 8.07 17.77 5.99 105.56 0.24 5.47 41.32 76.24 27.24 128.92 0.00 12.39 7.92 39.91 32.18 44.38 23 ER4b ExonRegion 0 11.02 0.00 35.17 9.39 2.02 4.53 5.82 6.85 17.06 5.37 63.31 0.00 8.85 78.29 113.09 64.66 136.08 1.39 27.17 8.15 27.32 67.81 75.52 24 E4a_E5a KnownJunction 0 6.59 0.00 40.92 8.39 3.82 2.84 1.99 6.98 15.94 3.92 39.69 0.00 6.17 55.68 137.96 119.03 66.95 2.49 35.20 9.20 13.10 83.71 127.79 25 ER5a ExonRegion 0 6.16 0.00 26.80 7.97 15.41 2.74 6.46 6.58 12.38 1.75 42.60 3.59 6.21 48.87 86.36 56.53 54.38 4.83 20.24 2.49 20.55 52.82 73.65 26 E5a_E6a KnownJunction 0 6.30 0.00 35.04 8.56 60.53 4.49 27.78 15.65 11.43 0.00 35.11 18.31 0.00 58.45 106.81 28.28 66.20 0.00 15.25 0.00 23.60 63.99 26.38 27 E6_Aa NovelBoundary 0 3.41 2.57 24.84 3.50 7.56 2.84 15.41 2.55 0.00 0.00 2.68 0.00 6.82 9.30 28.68 8.20 0.00 0.00 3.76 0.00 2.66 8.39 7.94 28 ER6a ExonRegion 0 16.45 3.63 45.62 17.53 36.30 15.46 35.71 17.75 10.47 5.72 64.88 7.49 19.71 102.98 128.64 42.29 111.12 5.77 17.09 10.90 30.97 66.98 66.39 29 E6_Da KnownBoundary 0 23.63 0.00 10.32 4.86 7.89 0.00 6.14 0.00 0.00 0.00 10.16 0.00 0.00 7.42 0.00 4.36 30.39 4.97 4.80 3.26 5.19 11.45 27.23 30 E6a_E7a KnownJunction 0 0.00 0.00 5.17 5.16 0.00 0.00 2.08 2.55 0.00 0.00 21.06 0.00 0.00 19.42 24.11 21.28 0.00 0.00 0.00 3.13 13.90 15.98 18.35 31 E6a_E7b KnownJunction 0 10.59 5.46 13.13 5.83 3.82 8.69 6.76 6.45 9.46 4.97 31.74 5.70 12.50 47.85 59.58 19.91 59.37 2.11 12.99 5.37 16.49 27.25 27.06 32 ER6b ExonRegion 0 8.11 1.43 8.90 1.64 2.05 0.43 3.75 0.60 0.00 1.60 7.10 3.34 0.90 9.97 12.92 7.93 10.96 1.14 6.39 3.36 4.06 7.71 10.62 33 E6_Db NovelBoundary 0 3.19 0.00 7.57 1.80 3.82 0.00 8.04 5.05 1.19 1.18 4.74 0.00 0.00 4.59 30.16 4.02 4.11 0.00 4.71 3.26 2.35 8.76 12.80 34 ER7a ExonRegion 0 4.60 0.06 11.12 3.78 3.98 0.08 5.41 1.43 1.01 1.95 17.98 2.35 5.70 20.19 37.34 13.54 27.59 0.61 0.14 5.71 10.26 19.56 22.91 35 E7_Ab KnownBoundary 0 9.85 0.00 22.71 3.86 4.33 0.00 6.54 2.01 1.68 5.00 14.21 0.00 0.00 24.37 23.12 7.86 36.19 2.16 0.00 6.14 6.05 27.80 30.90 36 ER7b ExonRegion 0 25.72 2.23 35.06 8.12 5.68 2.96 5.91 17.71 6.34 6.52 34.02 5.14 22.71 68.07 93.98 43.21 74.58 3.52 11.97 3.35 18.19 73.63 59.08 37 E7_Da KnownBoundary 0 10.37 2.89 24.19 5.03 0.00 4.88 0.00 8.67 2.55 7.12 16.79 0.00 6.82 46.38 92.71 22.05 46.28 1.87 0.00 2.75 2.59 56.52 16.82 38 ER7c ExonRegion 0 9.72 1.73 9.04 4.00 4.14 2.69 1.46 7.35 0.91 1.56 10.15 4.03 7.57 30.53 36.83 9.69 32.97 0.36 2.14 1.31 5.68 17.45 8.28 39 E7_Db KnownBoundary 1 42.75 2.76 7.45 1.33 8.06 0.00 11.92 11.46 1.79 0.00 19.06 12.60 12.66 36.08 18.54 0.00 29.55 1.95 7.53 2.94 2.84 8.63 30.65 40 ER7d ExonRegion 1 17.37 2.03 1.23 0.36 1.34 0.00 10.24 6.66 1.24 0.00 9.78 9.93 4.83 24.31 18.86 0.44 16.60 1.85 3.19 2.13 2.20 8.15 13.82 41 ER7e ExonRegion 0 4.23 2.03 1.23 0.00 0.00 0.00 7.50 2.88 1.24 0.00 3.87 2.89 0.00 6.50 12.57 0.00 4.40 0.00 3.19 1.42 1.47 4.17 5.87 42 ER7f ExonRegion 0 1.23 0.51 1.23 0.00 0.00 0.00 3.42 1.30 0.31 0.00 0.97 0.00 0.00 4.33 4.59 0.00 1.65 0.00 1.59 0.00 0.00 3.47 3.18