Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CUZD1 Gene 0 18.45 24.07 11.53 8.52 15.40 13.85 11.70 9.18 7.70 5.23 4.95 0.00 1.46 8.99 5.44 4.51 1.60 9.06 6.80 3.35 4.02 2.73 2.42 2 368904 Transcript 0 6.24 7.71 5.10 2.42 6.46 8.67 4.58 3.11 2.49 2.40 4.04 0.00 0.50 5.38 3.96 2.59 0.98 7.78 3.13 1.68 3.74 1.57 1.91 3 392790 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 368901 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 338948 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 368900 Transcript 0 30.30 20.65 6.45 1.27 4.07 12.72 10.95 3.57 2.49 4.62 1.95 0.00 0.00 11.71 5.19 0.00 0.00 1.58 4.71 0.00 0.00 8.70 0.00 7 368899 Transcript 0 1.55 3.24 1.42 1.81 1.02 2.29 2.91 1.44 0.83 0.93 0.64 0.00 0.21 2.64 1.18 0.84 0.74 3.16 1.14 0.40 0.81 0.28 0.29 8 ER1a ExonRegion 0 30.34 26.63 15.14 12.00 28.58 26.53 18.96 12.96 9.53 10.34 16.40 0.00 2.27 20.10 13.27 9.01 5.46 24.14 16.25 7.75 14.32 8.04 9.34 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 Ix Intron 0 28.98 7.12 12.02 7.43 13.56 11.88 10.38 9.83 6.16 3.84 12.53 0.00 0.20 12.98 10.61 8.70 3.62 17.32 3.83 3.78 7.02 1.52 2.92 11 Ix_SR1 SilentIntronRegion 0 30.19 6.76 12.39 7.24 13.41 13.05 10.14 9.84 6.10 4.51 11.60 0.00 0.25 13.05 10.36 9.33 3.61 17.99 4.51 3.91 7.15 1.61 3.21 12 Ix_AR1 ActiveIntronRegion 0 24.00 8.76 10.54 8.33 14.38 6.94 11.54 9.89 6.48 0.96 16.67 0.00 0.00 12.82 11.81 6.01 3.70 14.62 0.89 3.25 6.57 1.17 1.65 13 ER2a ExonRegion 0 5.32 11.33 3.54 1.58 2.58 8.37 6.35 1.06 2.15 2.62 2.47 0.00 0.72 1.70 1.59 1.49 0.00 3.28 0.82 0.32 1.87 0.00 0.68 14 E2_Da NovelBoundary 0 33.04 30.52 42.70 30.40 24.96 14.65 20.89 40.79 25.90 20.12 21.32 0.00 0.00 22.84 51.80 0.00 0.00 26.07 17.32 7.80 15.26 37.05 7.68 15 E2a_E3a KnownJunction 0 0.00 2.70 4.91 0.00 4.07 7.78 0.00 1.56 1.39 1.42 2.58 0.00 0.00 4.94 0.00 0.00 0.00 5.72 0.00 0.00 3.15 0.00 0.00 16 ER3a ExonRegion 0 1.52 5.17 6.31 0.65 3.55 8.93 2.16 1.73 1.88 0.00 2.77 0.00 0.00 5.01 8.89 3.36 0.43 13.54 1.73 1.99 3.11 1.40 1.47 17 E3_Ab KnownBoundary 0 3.70 5.92 8.43 1.66 4.33 8.29 9.85 2.14 2.72 0.00 5.21 0.00 0.00 9.54 0.00 8.72 0.00 18.78 4.80 6.20 5.87 3.12 4.35 18 ER3b ExonRegion 0 4.75 12.18 4.06 2.95 6.10 5.98 4.89 5.68 4.12 2.05 2.88 0.00 0.95 7.52 1.73 5.85 0.37 16.18 8.27 3.72 2.77 1.29 0.95 19 E3a_E4a KnownJunction 0 7.11 18.81 0.00 0.00 8.15 5.79 2.16 4.11 5.70 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.72 13.37 0.00 0.00 3.12 8.37 20 E3a_E5a KnownJunction 0 0.00 12.76 0.00 0.00 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.13 0.00 0.00 0.00 0.00 0.00 21 E3a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER4a ExonRegion 0 8.16 14.52 3.24 3.20 5.51 6.90 5.94 5.23 5.97 3.01 0.72 0.00 0.00 5.03 2.08 3.39 1.11 9.02 6.54 1.59 2.16 3.90 2.08 23 E4a_E5a KnownJunction 0 17.93 12.17 3.31 1.90 7.05 8.46 6.67 5.71 14.32 1.67 5.11 0.00 0.00 4.65 0.00 12.99 0.00 1.66 4.52 2.68 0.00 0.00 7.43 24 ER5a ExonRegion 0 9.43 20.22 10.44 8.08 10.47 12.17 10.30 7.37 13.53 5.25 7.91 0.00 0.92 10.66 3.51 5.06 1.57 8.12 7.01 4.33 5.28 4.37 1.27 25 E5a_E6b KnownJunction 0 0.00 10.98 8.66 8.66 15.20 0.00 8.17 6.53 8.36 4.14 5.00 0.00 6.66 9.71 4.70 4.36 0.00 6.34 3.58 2.68 0.00 0.00 0.00 26 ER6a ExonRegion 0 3.70 6.22 3.97 5.12 2.45 6.35 6.01 2.22 2.00 2.52 1.82 0.00 0.36 3.99 0.81 2.51 1.85 4.50 2.89 1.19 0.82 0.84 0.55 27 E6_Ab KnownBoundary 0 3.63 3.35 1.24 5.79 6.62 0.00 1.94 7.93 1.45 4.19 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 4.52 0.00 0.00 2.94 0.00 28 ER6b ExonRegion 0 14.97 24.48 6.66 9.66 13.27 16.77 12.32 9.16 12.47 5.09 4.66 0.00 2.47 11.99 3.23 1.45 1.58 4.56 5.22 2.34 6.02 3.31 2.25 29 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 30 E6a_E7b KnownJunction 0 24.08 39.93 7.57 6.56 16.38 12.21 10.02 9.32 10.53 5.67 2.68 0.00 0.00 2.47 4.45 0.00 4.30 2.57 13.55 0.00 8.77 0.00 8.54 31 E6a_E7c KnownJunction 0 30.30 20.65 6.45 1.27 4.07 12.72 10.95 3.57 2.49 4.62 1.95 0.00 0.00 11.71 5.19 0.00 0.00 1.58 4.71 0.00 0.00 8.70 0.00 32 ER7a ExonRegion 0 0.94 3.50 0.27 0.30 0.59 0.51 2.72 2.11 0.48 0.25 0.11 0.00 0.26 1.44 2.74 0.00 0.37 2.46 0.53 0.00 1.59 0.00 0.33 33 ER7b ExonRegion 0 15.63 36.51 7.22 5.14 14.76 3.24 11.39 9.32 5.69 5.30 2.80 0.00 4.09 7.16 1.07 2.51 2.50 5.80 5.69 4.31 5.75 2.08 2.62 34 E7_Ac KnownBoundary 0 24.75 33.35 13.45 14.22 16.04 7.61 19.08 13.14 7.29 9.70 4.95 0.00 0.00 12.60 0.00 4.36 4.58 13.47 21.65 9.40 10.75 2.39 8.71 35 ER7c ExonRegion 0 25.02 36.78 15.12 10.68 20.03 18.34 12.15 9.46 8.46 7.51 8.19 0.00 1.31 9.12 7.89 4.81 0.83 7.15 8.01 6.10 6.68 4.57 2.46 36 E7a_E8a KnownJunction 0 12.82 35.91 12.77 5.33 27.25 4.43 16.56 14.70 7.29 5.91 2.68 0.00 6.82 7.18 18.54 11.28 0.00 4.31 0.00 7.80 0.00 2.45 0.00 37 ER8a ExonRegion 0 30.43 42.93 16.35 9.39 24.92 17.71 15.29 11.75 11.82 7.19 7.45 0.00 0.62 8.74 4.06 3.83 0.00 3.30 5.95 3.92 0.20 3.12 1.92 38 E8a_E9a KnownJunction 0 67.57 44.73 13.01 10.49 16.30 2.50 17.93 18.40 15.25 5.75 2.68 0.00 0.00 9.42 5.19 12.05 0.00 0.00 8.47 0.00 2.78 0.00 3.67 39 ER9a ExonRegion 0 41.30 41.28 17.41 11.43 30.31 18.69 19.20 19.82 11.20 7.17 2.90 0.00 1.88 9.78 7.35 6.38 0.85 5.86 7.71 3.07 2.50 2.26 4.11 40 E9a_E10a KnownJunction 0 41.12 45.85 12.36 7.76 32.00 9.82 23.10 12.65 13.72 7.58 0.00 0.00 8.12 4.36 8.90 4.36 0.00 6.55 0.00 0.00 8.65 2.63 0.00 41 ER10a ExonRegion 0 34.28 45.56 29.30 20.53 30.02 23.81 21.22 16.58 13.14 8.93 5.67 0.00 2.13 13.40 13.16 5.42 1.75 9.44 6.11 4.21 4.27 2.53 1.67 42 E10a_E11a KnownJunction 0 23.78 44.73 45.74 33.30 34.47 16.18 19.78 21.52 17.56 8.46 7.79 0.00 0.00 14.83 28.18 7.43 9.44 17.33 9.51 9.78 2.53 3.00 0.00 43 ER11a ExonRegion 0 25.06 29.05 20.95 13.42 18.23 18.53 11.66 10.45 9.36 4.95 2.88 0.00 2.70 7.93 8.97 3.00 1.27 4.94 6.63 2.78 2.23 2.31 0.51 44 ER11b ExonRegion 0 2.12 4.07 1.23 1.36 0.00 1.83 0.00 1.73 0.00 0.00 0.00 0.00 0.00 1.62 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER11c ExonRegion 0 0.24 0.45 0.68 0.30 0.00 0.41 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.54 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00