Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CALY Gene 0 1.40 9.30 17.14 6.42 2.90 18.43 4.42 68.20 200.53 8.64 0.00 0.00 0.00 0.16 0.00 0.00 0.00 26.74 37.47 26.89 1.19 0.63 1.50 2 368556 Transcript 0 0.00 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 3 368558 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 252939 Transcript 0 1.44 18.45 1.60 1.19 0.00 4.02 1.13 73.57 294.51 2.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.03 8.08 25.44 0.00 0.00 0.00 5 368555 Transcript 0 1.58 3.34 0.00 0.43 0.86 4.96 1.07 25.85 62.54 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.66 9.39 3.15 0.47 0.05 0.31 6 467611 Transcript 0 0.00 1.74 7.60 3.82 1.38 22.79 3.90 13.83 8.58 5.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.97 34.04 10.64 0.00 0.00 3.19 7 467433 Transcript 0 0.00 0.00 2.20 0.10 0.00 1.53 0.63 4.49 1.16 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 6.73 1.55 0.00 0.00 0.00 8 ER1a ExonRegion 0 0.00 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 9 E1_Ab KnownBoundary 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.81 0.00 0.00 0.00 10 E1_Ac KnownBoundary 0 0.00 12.43 1.83 0.00 0.00 2.78 2.21 11.58 8.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.28 15.72 0.00 0.00 0.00 11 ER1b ExonRegion 0 0.68 8.57 0.00 0.00 0.00 3.27 0.00 7.10 19.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 6.83 6.38 0.00 0.00 0.00 12 ER1c ExonRegion 0 9.80 32.25 0.00 0.74 0.84 33.17 2.65 48.64 128.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.24 44.23 21.34 0.00 0.00 0.00 13 E1_Ad KnownBoundary 0 20.37 52.10 1.51 2.63 3.48 64.57 6.76 84.33 255.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.07 74.45 39.82 0.00 0.00 0.00 14 ER1d ExonRegion 0 7.41 37.57 1.03 3.41 2.68 46.86 2.89 89.56 288.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.23 48.87 32.25 0.00 0.00 0.00 15 E1a_E2a KnownJunction 0 0.00 30.85 1.83 5.39 0.00 27.14 0.00 97.10 369.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.56 35.67 18.66 0.00 0.00 0.00 16 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2a ExonRegion 0 0.60 21.21 1.23 4.09 0.76 23.32 0.00 83.46 314.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.78 36.40 24.01 0.00 0.00 0.00 18 ER2b ExonRegion 0 0.00 8.89 1.56 3.56 0.00 6.21 0.13 90.15 285.60 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.46 17.82 23.94 0.00 0.72 1.01 19 E2a_E3a KnownJunction 0 0.00 21.44 0.00 6.89 0.00 0.00 1.99 205.78 653.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.96 32.85 48.00 0.00 0.00 0.00 20 ER3a ExonRegion 0 0.00 7.69 3.15 6.74 0.92 17.38 1.97 187.39 590.93 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.87 39.40 45.52 1.01 1.46 1.35 21 E3_Da KnownBoundary 0 0.00 5.99 0.00 0.00 0.00 2.33 2.25 28.83 47.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.12 0.00 0.00 2.57 0.00 22 E3a_E4a KnownJunction 0 0.00 17.56 1.63 8.46 7.64 40.54 0.00 190.21 567.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.43 17.69 42.38 0.00 2.69 0.00 23 ER3b ExonRegion 0 1.58 3.34 0.00 0.43 0.86 4.96 1.07 25.85 62.54 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.66 9.39 3.15 0.47 0.05 0.31 24 E3_Db NovelBoundary 0 6.67 12.50 0.00 1.40 0.00 10.85 0.00 53.03 104.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 0.00 8.44 0.00 0.00 3.93 25 I3 Intron 0 0.74 0.95 0.43 0.95 0.00 5.37 0.16 19.63 33.23 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 8.59 0.75 0.00 0.00 0.00 26 I3_SR1 SilentIntronRegion 0 0.75 0.96 0.43 0.96 0.00 5.40 0.16 19.72 33.38 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.84 8.63 0.75 0.00 0.00 0.00 27 ER4a ExonRegion 0 2.01 24.30 3.38 11.11 0.31 24.56 2.01 164.90 578.34 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.34 13.24 48.00 1.93 0.24 0.00 28 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.65 29.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E4a_E5d KnownJunction 0 2.89 36.90 1.24 1.83 0.00 7.67 2.25 145.40 586.31 4.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.06 12.33 50.88 0.00 0.00 0.00 30 I4_AR1 ActiveIntronRegion 0 1.32 3.58 11.46 3.16 7.11 4.44 0.83 8.74 22.00 4.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 14.93 5.33 0.00 0.00 0.00 31 E5_Aa NovelBoundary 0 0.00 9.93 30.60 3.96 4.33 8.29 6.58 21.15 28.67 9.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 20.89 21.99 2.66 0.00 0.00 32 ER5a ExonRegion 0 0.00 1.74 7.60 3.82 1.38 22.79 3.90 13.83 8.58 5.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.97 34.04 10.64 0.00 0.00 3.19 33 E5_Ab KnownBoundary 0 0.00 3.35 33.14 11.15 4.07 54.12 12.98 33.02 23.93 17.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.12 86.87 40.01 0.00 0.00 8.19 34 ER5b ExonRegion 0 0.00 5.66 40.87 10.51 5.16 54.75 18.16 35.19 58.40 10.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.73 102.39 30.85 1.89 0.00 5.87 35 ER5c ExonRegion 0 2.37 13.92 65.99 17.94 7.15 60.19 28.07 46.78 71.76 25.48 0.00 0.00 0.00 0.48 0.00 0.00 0.00 90.46 133.40 47.18 4.65 3.50 5.71 36 E5_Ac KnownBoundary 0 0.00 3.03 56.68 19.15 4.24 7.61 2.25 45.30 64.81 16.01 0.00 0.00 0.00 2.47 0.00 0.00 0.00 32.13 21.46 50.17 0.00 0.00 3.76 37 ER5d ExonRegion 0 1.04 2.92 52.20 15.56 2.04 4.97 0.51 29.07 60.03 19.58 0.00 0.00 0.00 0.44 0.00 0.00 0.00 25.16 26.00 43.64 2.56 0.00 2.99 38 E5_Ad KnownBoundary 0 3.78 6.18 78.06 17.78 4.33 5.62 0.00 37.30 56.45 34.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.97 74.92 48.45 7.41 0.00 3.16 39 ER5e ExonRegion 0 1.94 17.67 57.10 16.04 8.20 28.22 7.64 109.65 325.77 27.37 0.00 0.00 0.00 0.73 0.00 0.00 0.00 68.26 87.02 68.47 2.64 1.70 4.89 40 E5_Db KnownBoundary 0 0.00 8.75 29.80 5.49 42.78 102.67 55.95 103.30 291.81 24.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 95.18 49.04 39.76 3.09 0.00 0.00 41 ER5f ExonRegion 0 0.00 5.34 22.31 3.77 6.40 25.38 10.41 68.28 173.09 17.95 0.00 0.00 0.00 0.51 0.00 0.00 0.00 45.24 42.70 27.23 1.16 0.80 1.13 42 E5_Dc KnownBoundary 0 0.00 0.00 10.05 0.00 0.00 8.35 1.99 11.25 9.29 2.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.61 17.98 6.14 0.00 0.00 0.00 43 E5c_E6a KnownJunction 0 0.00 0.00 11.68 2.93 0.00 0.00 0.00 60.95 215.42 13.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.79 28.52 0.00 0.00 0.00 0.00 44 ER5g ExonRegion 0 0.00 0.00 4.40 0.21 0.00 3.06 1.26 6.43 2.31 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 8.66 3.11 0.00 0.00 0.00 45 E5_Dd NovelBoundary 0 0.00 0.00 20.93 5.13 0.00 13.00 2.08 36.06 8.28 12.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.85 20.99 15.47 0.00 0.00 0.00 46 E5d_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 47 E6_Aa NovelBoundary 0 2.82 6.38 31.73 11.42 0.00 2.16 0.00 16.68 17.68 10.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.42 16.09 11.57 0.00 2.82 0.00 48 ER6a ExonRegion 0 0.78 4.46 31.94 11.84 6.87 28.09 3.40 54.85 163.20 17.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.22 58.05 25.62 1.62 0.00 1.08 49 ER6b ExonRegion 0 0.00 0.00 1.96 0.55 0.00 0.37 0.00 1.73 2.72 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.82 0.00 0.00 0.00 0.00 50 IG9 Intergenic 0 0.66 2.36 13.50 6.59 6.21 6.36 1.44 19.48 16.66 4.11 0.08 0.00 0.05 0.05 0.03 0.00 0.09 7.05 8.17 9.46 0.09 0.00 0.33 51 IG9_SR1 SilentIntergenicRegion 0 0.91 3.13 15.91 8.28 8.14 7.90 1.68 25.76 20.28 4.03 0.08 0.00 0.08 0.06 0.05 0.00 0.13 7.88 9.07 12.03 0.13 0.00 0.46