Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IKZF5 Gene 0 52.50 139.49 50.34 51.45 89.65 128.30 65.67 79.27 76.02 35.29 76.29 140.26 194.95 78.08 54.85 64.67 61.25 37.53 18.47 55.66 30.83 79.18 32.03 2 368886 Transcript 0 37.99 127.19 33.52 26.63 53.82 75.35 47.80 47.70 57.07 24.92 84.43 131.36 165.56 81.63 54.58 60.00 77.05 45.30 10.71 48.08 43.60 70.11 32.99 3 479103 Transcript 0 16.53 24.50 13.72 8.25 24.16 32.01 21.41 15.63 21.49 6.60 14.59 52.20 49.16 19.80 8.61 20.61 23.16 11.80 9.77 24.17 8.03 18.45 11.48 4 496605 Transcript 0 0.00 0.00 3.40 0.00 0.00 0.00 0.00 6.28 0.00 2.71 7.69 6.30 13.64 7.59 0.00 17.60 13.84 7.92 0.00 5.88 0.00 8.45 11.87 5 469821 Transcript 0 0.00 3.22 0.00 0.00 0.00 14.14 0.00 4.27 3.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 6.06 0.00 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.45 1.83 3.75 0.29 0.41 0.00 0.00 0.00 3.91 0.00 0.00 0.50 1.10 0.00 0.00 0.35 0.73 0.00 0.98 7 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 2.68 1.83 14.30 2.07 2.47 0.00 0.77 0.00 4.69 0.00 1.16 5.94 6.60 0.00 0.64 3.83 4.41 0.83 2.94 8 ER1c ExonRegion 0 0.31 4.73 1.91 1.32 14.87 5.99 46.26 6.00 8.72 2.02 2.96 3.31 4.41 7.40 13.99 16.52 18.83 0.00 3.19 20.71 7.58 8.21 7.51 9 E1_Ad KnownBoundary 0 3.70 2.96 4.08 5.59 32.60 10.68 100.03 16.10 22.86 4.03 2.47 6.30 0.00 3.00 4.45 37.43 42.73 9.16 4.24 42.12 17.48 5.82 14.51 10 ER1d ExonRegion 0 5.47 37.58 11.40 4.93 18.22 46.26 36.80 14.70 31.35 8.78 11.25 22.52 46.90 18.79 22.77 29.38 27.99 2.46 0.65 30.62 18.94 31.41 14.68 11 E1a_E2a KnownJunction 0 7.56 27.63 14.40 4.10 12.99 24.13 18.02 8.83 28.39 8.89 27.32 86.43 151.29 4.24 0.00 7.86 22.07 12.56 0.00 27.16 16.19 25.72 4.35 12 E1a_E3a KnownJunction 0 0.00 3.22 0.00 0.00 0.00 14.14 0.00 4.27 3.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 6.06 0.00 13 ER2a ExonRegion 0 4.26 21.59 19.82 9.68 25.43 18.13 17.45 30.55 44.73 13.19 99.40 101.21 121.51 84.40 31.30 84.81 84.10 51.79 13.99 53.33 46.56 43.26 37.83 14 E2a_E3a KnownJunction 1 0.00 24.80 28.98 7.89 80.39 43.90 32.28 44.81 32.15 15.63 65.17 129.34 210.86 88.35 38.07 128.17 49.18 49.21 7.53 56.89 25.82 45.13 56.00 15 E2a_E3b KnownJunction 0 0.00 0.00 3.40 0.00 0.00 0.00 0.00 6.28 0.00 2.71 7.69 6.30 13.64 7.59 0.00 17.60 13.84 7.92 0.00 5.88 0.00 8.45 11.87 16 I2_SR1 SilentIntronRegion 0 4.09 1.92 2.19 3.27 4.30 3.02 7.69 3.37 6.67 2.20 6.52 28.49 27.25 6.38 2.98 9.08 8.45 2.88 2.28 13.43 4.39 8.55 2.65 17 I2_AR2 ActiveIntronRegion 0 4.84 7.68 5.36 4.51 8.28 8.05 9.45 7.19 10.72 1.98 6.43 55.00 37.87 11.02 10.53 15.33 15.28 8.01 5.60 16.39 4.10 19.50 7.23 18 I2_AR3 ActiveIntronRegion 0 13.45 15.64 6.45 4.72 10.76 2.41 13.34 6.33 10.96 0.88 5.48 19.11 34.86 9.43 5.12 6.96 8.90 3.01 2.66 15.33 3.52 8.87 5.88 19 I2_AR4 ActiveIntronRegion 1 8.22 13.61 4.67 2.15 3.81 1.27 6.01 2.66 20.52 1.15 13.98 34.80 80.09 14.12 5.80 2.06 21.58 2.06 0.49 31.10 3.22 11.62 20.56 20 I2_AR5 ActiveIntronRegion 1 8.25 14.03 7.96 0.14 8.03 5.87 9.93 5.53 19.27 0.00 13.72 23.81 61.44 16.89 4.64 5.94 22.78 3.51 3.19 16.38 3.31 15.63 19.97 21 I2_SR3 SilentIntronRegion 0 7.73 23.55 6.64 2.46 11.49 12.39 18.58 4.96 12.79 0.09 6.31 29.16 63.32 9.36 2.52 9.01 13.27 3.02 2.93 24.38 6.99 15.54 5.33 22 I2_AR6 ActiveIntronRegion 0 5.41 25.98 11.03 6.81 8.03 10.80 23.39 4.42 8.92 1.15 6.44 43.29 58.36 16.24 10.32 14.86 13.20 0.00 9.56 17.49 2.20 14.12 7.18 23 I2_SR4 SilentIntronRegion 0 10.33 11.95 11.90 8.12 9.24 4.79 13.79 9.37 8.51 2.76 7.59 29.88 50.70 9.17 6.38 7.47 10.37 2.95 4.08 13.82 2.66 13.28 4.97 24 I2_AR7 ActiveIntronRegion 0 13.03 27.32 10.60 6.79 15.12 15.80 10.29 10.87 9.71 2.71 6.27 35.20 21.69 7.31 5.12 6.96 6.89 1.59 5.60 10.85 0.95 10.64 4.29 25 I2_AR8 ActiveIntronRegion 0 20.46 12.20 11.03 2.73 3.12 24.15 14.56 9.22 6.59 5.16 9.66 23.81 9.38 6.50 0.00 0.00 0.00 14.17 3.72 8.87 4.41 8.33 5.87 26 I2_AR9 ActiveIntronRegion 0 13.04 7.91 6.57 6.12 10.19 16.96 9.93 2.67 7.53 2.01 5.44 16.02 11.68 6.72 1.41 3.59 3.21 3.64 2.03 7.95 2.57 10.05 4.43 27 E3_Ab NovelBoundary 1 20.89 34.20 17.36 16.12 64.52 91.03 45.84 39.51 27.00 8.62 44.43 98.28 98.86 52.33 9.64 30.59 47.22 32.08 4.14 42.89 18.72 26.82 29.88 28 ER3a ExonRegion 0 4.54 32.68 23.46 14.80 77.98 74.01 37.83 44.45 38.91 16.22 70.55 142.56 209.04 86.31 31.08 98.72 66.96 57.54 6.14 51.82 33.84 52.09 57.05 29 ER3b ExonRegion 0 22.85 88.01 36.74 27.07 58.80 133.34 67.06 65.21 75.48 24.64 124.23 184.07 239.08 127.54 42.87 108.65 147.26 83.17 24.32 64.54 72.72 94.09 41.52 30 E3_Da KnownBoundary 0 7.41 11.58 10.76 12.89 44.48 29.07 6.18 29.37 19.30 5.26 14.74 56.87 38.15 16.60 4.45 12.65 37.49 11.15 0.00 14.06 14.89 10.84 16.73 31 E3a_E4a KnownJunction 0 24.75 49.73 30.45 18.95 34.63 51.62 19.70 56.97 77.52 23.77 79.97 91.68 198.04 86.29 26.95 81.26 99.30 59.86 48.94 54.84 72.16 91.54 26.97 32 ER3c ExonRegion 0 16.53 24.50 13.72 8.25 24.16 32.01 21.41 15.63 21.49 6.60 14.59 52.20 49.16 19.80 8.61 20.61 23.16 11.80 9.77 24.17 8.03 18.45 11.48 33 E3_Db NovelBoundary 0 7.41 41.37 15.17 12.72 34.80 30.55 24.51 32.78 27.20 6.96 2.37 30.46 28.24 11.83 0.00 4.10 0.00 14.09 0.00 23.84 5.99 8.02 16.90 34 I3 Intron 0 7.32 27.07 10.42 5.27 14.80 22.19 14.89 8.02 14.32 2.95 13.70 31.39 25.42 12.44 6.61 11.82 14.27 10.17 12.67 12.87 3.05 16.93 7.11 35 I3_SR1 SilentIntronRegion 0 7.34 27.16 10.45 5.28 14.85 22.26 14.94 8.04 14.37 2.96 13.75 31.50 25.51 12.48 6.63 11.86 14.32 10.21 12.71 12.92 3.06 16.98 7.13 36 Ix Intron 0 15.55 26.27 8.18 12.00 16.26 19.97 18.78 22.84 23.16 5.20 19.42 20.45 41.65 14.12 8.72 15.06 16.44 11.41 5.65 14.73 5.76 16.01 9.43 37 Ix_AR2 ActiveIntronRegion 0 17.09 28.46 8.41 12.65 16.46 19.15 17.75 29.17 29.58 4.70 24.98 23.95 40.25 15.13 9.21 19.37 19.00 13.10 5.23 16.83 6.92 19.83 12.19 38 Ix_SR1 SilentIntronRegion 0 15.17 23.10 8.06 9.09 15.36 23.60 17.29 15.63 14.94 6.20 12.21 15.92 36.01 12.59 7.48 9.88 11.34 9.36 7.32 12.54 3.13 11.98 8.37 39 Ix_AR1 ActiveIntronRegion 0 10.35 23.70 7.56 14.84 17.30 16.95 25.68 11.20 13.00 5.36 10.80 15.11 57.69 13.07 9.12 7.63 15.77 8.62 4.35 10.61 6.00 8.43 0.62 40 E4_Aa NovelBoundary 0 17.41 40.78 9.31 8.62 11.54 37.48 28.09 37.71 38.34 9.37 14.06 18.31 46.43 28.84 13.72 15.38 19.54 18.74 8.09 21.99 2.35 28.53 10.41 41 ER4a ExonRegion 0 36.12 77.82 25.00 20.03 24.35 67.85 31.07 54.79 72.17 22.86 128.54 156.01 261.70 119.43 48.84 91.34 106.07 69.66 45.98 67.52 76.03 94.59 54.92 42 ER4b ExonRegion 0 48.97 146.82 51.04 32.15 50.40 103.05 61.08 78.75 97.67 31.27 189.54 238.40 351.32 176.34 68.68 142.82 164.57 101.42 31.08 81.07 103.43 110.02 64.72 43 E4_Db NovelBoundary 0 18.00 15.33 8.72 2.83 3.99 16.81 10.29 23.25 19.62 4.03 12.79 0.00 26.62 8.01 4.45 33.92 16.55 14.18 11.58 12.08 5.81 16.53 3.16 44 E4b_E5a KnownJunction 0 53.94 223.38 44.38 20.21 58.74 80.64 67.70 54.26 88.83 34.97 178.36 248.18 288.46 167.34 103.59 116.55 173.91 100.77 13.27 86.48 102.74 125.71 66.07 45 Ix Intron 0 11.31 11.77 8.50 6.26 12.96 12.92 13.15 11.66 19.33 5.48 14.59 16.50 22.02 7.20 3.66 12.34 12.04 14.45 7.81 10.44 5.27 15.21 9.60 46 Ix_AR3 ActiveIntronRegion 0 13.11 15.00 10.59 5.35 15.87 12.08 11.86 12.56 20.86 5.18 19.09 13.66 17.89 8.57 5.13 18.41 15.23 23.12 11.75 12.90 6.97 15.39 10.84 47 Ix_AR2 ActiveIntronRegion 0 9.55 8.39 7.07 10.26 8.24 16.43 14.34 11.32 23.42 6.51 16.93 16.30 23.64 7.63 2.93 8.37 14.34 10.62 3.49 10.87 6.64 13.02 13.16 48 Ix_AR1 ActiveIntronRegion 0 10.69 10.27 6.15 4.89 13.52 12.79 15.29 10.53 14.61 5.35 5.58 21.69 29.82 4.80 2.18 5.00 5.56 3.55 5.36 7.17 1.06 18.54 5.65 49 E5_Aa NovelBoundary 0 25.49 52.69 16.47 21.84 36.84 19.99 37.19 27.07 44.30 6.72 19.43 75.77 55.68 14.66 0.00 20.34 0.00 18.24 4.33 14.38 8.15 16.66 7.85 50 ER5a ExonRegion 0 60.04 158.19 56.18 59.67 102.28 143.58 71.93 88.54 81.96 39.78 74.93 145.89 204.32 77.55 60.15 62.96 56.14 35.13 18.87 57.41 27.34 84.63 31.91