Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 INPP5A Gene 0 35.54 44.76 64.71 48.13 41.30 50.64 41.61 62.58 66.89 46.85 55.07 28.70 33.43 86.11 47.91 69.60 53.02 36.49 63.62 38.16 74.58 65.18 58.62 2 368594 Transcript 0 36.28 34.46 69.40 44.98 41.09 31.64 34.94 47.71 55.07 39.27 46.48 24.58 26.99 62.91 51.59 69.16 51.56 30.60 49.99 47.06 85.30 49.12 54.45 3 368595 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 368593 Transcript 0 0.33 0.00 0.94 0.37 1.44 1.97 1.90 1.86 3.39 0.27 2.18 0.00 2.07 9.23 2.38 7.73 12.37 0.16 0.00 0.00 4.11 2.24 3.25 5 451873 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.64 0.00 0.00 2.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 423490 Transcript 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 342652 Transcript 0 0.00 0.00 0.00 1.93 0.00 0.00 1.77 0.00 2.66 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 487614 Transcript 0 2.35 1.17 3.56 2.80 0.61 0.42 1.99 6.45 0.75 0.20 7.95 3.40 2.58 18.38 20.17 8.92 11.45 2.74 4.39 1.15 6.07 2.82 8.82 9 432898 Transcript 0 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 498337 Transcript 0 0.00 0.00 0.24 0.00 0.68 0.47 1.69 0.67 2.17 0.44 0.48 2.73 9.46 7.47 4.52 8.00 3.86 3.65 2.44 0.55 2.25 0.00 1.87 11 445580 Transcript 0 0.00 0.00 5.32 1.63 7.72 5.11 4.06 13.35 11.20 1.67 0.00 0.00 0.00 2.12 0.00 0.00 0.00 2.49 4.52 2.49 2.97 0.00 0.00 12 416326 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 ER1a ExonRegion 0 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 6.39 0.00 0.00 14 ER1b ExonRegion 0 0.43 1.66 0.60 0.07 0.72 1.40 0.96 0.14 0.47 0.30 4.13 2.03 0.78 5.62 1.54 2.63 4.65 1.44 1.15 3.28 11.64 1.30 4.00 15 E1_Ac KnownBoundary 0 0.00 12.63 9.93 2.00 4.16 9.20 8.57 7.89 9.58 3.01 10.11 6.30 0.00 28.37 13.35 7.86 7.85 0.00 3.76 9.20 41.95 17.70 38.84 16 E1_Ad KnownBoundary 0 18.15 24.93 14.99 9.56 12.48 15.45 10.55 10.80 26.22 9.89 30.59 25.06 13.31 91.59 37.70 48.36 12.81 22.38 17.41 28.89 54.55 32.70 27.83 17 ER1c ExonRegion 0 6.91 15.05 10.82 5.22 7.14 9.60 9.93 6.28 17.09 7.68 19.72 14.86 9.54 71.35 25.72 31.70 11.33 9.49 10.72 19.15 45.54 26.60 24.08 18 ER1d ExonRegion 0 9.39 21.92 29.03 12.22 6.44 15.99 15.47 22.04 37.25 20.79 44.46 11.36 21.11 80.19 39.62 64.64 29.71 31.99 27.18 27.79 70.66 30.08 36.71 19 E1a_E2a KnownJunction 0 9.71 28.35 42.75 17.65 8.66 23.05 29.81 33.19 43.23 23.91 54.28 6.75 33.60 67.93 48.46 80.58 51.71 42.45 45.55 34.32 83.96 31.60 67.10 20 I1_AR1 ActiveIntronRegion 0 1.75 0.99 6.58 1.69 1.98 0.34 2.84 3.16 4.51 2.93 1.14 0.33 2.85 1.46 3.31 8.76 11.70 3.06 2.23 5.23 1.63 0.19 3.62 21 I1_AR4 ActiveIntronRegion 0 4.64 1.46 5.96 1.82 2.03 1.50 8.51 7.07 4.87 1.96 0.30 5.52 1.11 1.63 8.23 14.26 8.04 4.89 0.00 5.86 1.67 0.47 3.22 22 E2_Ab NovelBoundary 0 6.08 12.43 33.68 10.99 3.48 6.70 34.54 32.00 31.65 22.91 21.69 6.30 12.99 73.40 37.83 45.03 42.36 25.70 83.48 20.33 45.34 48.74 47.04 23 ER2a ExonRegion 1 8.11 20.17 44.11 16.92 10.26 18.64 35.42 41.05 46.73 31.16 56.70 4.33 29.31 98.94 63.59 86.93 63.54 50.20 77.78 32.27 87.78 52.78 69.50 24 E2a_E3a KnownJunction 0 21.04 27.69 52.33 18.91 41.51 41.45 41.12 53.15 49.04 47.20 79.18 26.56 26.13 145.51 47.22 125.27 76.67 46.88 123.39 56.44 135.60 106.79 90.48 25 E2a_E5a KnownJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER2b ExonRegion 0 13.69 23.79 48.81 19.31 23.90 29.10 40.07 50.59 53.36 44.19 74.09 19.05 28.61 139.40 72.63 108.88 81.31 51.49 105.01 44.68 116.14 86.12 98.08 27 ER3a ExonRegion 0 17.02 30.54 47.52 24.69 28.11 26.91 22.81 58.00 85.27 53.55 119.80 29.28 37.89 132.97 38.43 92.90 100.82 58.85 60.90 47.15 134.06 72.55 66.93 28 E3a_E4a KnownJunction 0 20.30 27.23 60.94 45.28 30.31 34.41 28.84 80.26 89.32 59.36 146.30 36.91 88.47 193.13 67.62 156.54 105.75 87.01 79.72 75.42 133.38 102.75 76.06 29 ER4a ExonRegion 0 21.09 54.35 77.57 44.99 52.15 44.45 41.66 98.64 111.06 87.36 133.33 57.27 92.04 208.33 94.62 166.00 159.57 85.40 137.51 73.02 139.66 125.67 147.13 30 E4a_E5a KnownJunction 1 26.38 66.70 73.30 55.30 77.33 70.93 49.20 86.58 102.52 96.09 124.87 95.43 79.86 204.90 52.78 137.83 111.73 45.56 117.93 44.55 149.69 145.12 120.02 31 E5_Ab NovelBoundary 0 14.97 37.43 43.32 33.03 28.10 25.33 24.42 42.88 67.79 50.42 48.28 11.85 19.15 63.45 22.87 67.85 32.73 23.96 51.95 17.90 67.34 73.24 80.92 32 ER5a ExonRegion 0 21.17 58.36 62.86 51.52 65.29 62.90 40.65 88.67 115.85 94.28 133.37 87.02 72.70 211.79 69.92 185.76 109.59 53.77 116.90 45.74 162.19 150.43 144.19 33 ER5b ExonRegion 0 24.58 57.13 72.68 57.70 61.44 98.52 64.63 94.46 136.09 82.09 126.96 64.78 91.72 211.02 70.22 196.33 146.22 66.96 104.82 56.70 152.50 158.23 131.12 34 E5a_E6a KnownJunction 0 46.82 65.38 92.25 72.88 110.87 100.23 102.32 126.80 145.11 75.78 139.25 88.08 101.13 194.36 74.42 182.60 177.56 84.77 134.59 76.57 159.94 146.23 96.03 35 ER6a ExonRegion 0 34.33 48.31 82.00 63.60 67.02 93.25 85.20 115.36 125.25 79.48 146.83 93.89 93.58 202.71 87.81 171.83 179.90 104.40 141.16 78.50 166.43 137.27 150.32 36 E6_Da NovelBoundary 0 19.71 29.53 62.15 49.01 33.02 46.79 38.07 63.42 100.40 60.31 80.70 62.27 52.43 122.84 55.63 114.50 101.45 59.11 66.64 62.89 101.69 103.73 103.20 37 E6a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E6b_E7a KnownJunction 0 22.97 64.92 109.96 78.11 66.21 84.10 54.06 115.25 143.11 79.32 150.25 87.18 81.65 274.18 100.75 163.03 120.06 97.29 131.30 61.36 180.88 194.60 137.86 39 E6b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER6b ExonRegion 0 20.46 55.58 92.31 77.91 47.27 80.99 46.78 101.40 134.83 81.62 138.85 78.65 96.15 226.84 73.50 178.33 140.84 107.79 117.33 73.76 180.70 179.53 150.75 41 ER6c ExonRegion 0 23.81 54.23 98.23 75.87 59.31 77.63 48.10 107.60 142.86 72.54 149.64 88.75 86.77 245.78 87.52 163.22 135.34 102.55 106.98 65.60 169.69 177.45 141.94 42 ER7a ExonRegion 0 42.11 57.53 102.96 77.47 73.44 91.83 66.16 125.63 142.75 94.74 165.06 96.73 80.10 253.28 84.82 198.74 150.45 108.92 149.21 70.88 222.63 176.66 151.39 43 E7_Da NovelBoundary 0 51.94 33.48 72.00 55.80 52.12 67.86 69.91 83.30 96.93 71.32 94.55 36.76 53.41 141.74 47.10 150.90 111.64 67.07 121.13 58.93 167.35 106.24 107.39 44 E7a_E7b KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E7b_E9a KnownJunction 0 43.86 52.10 99.17 78.48 84.38 74.62 96.94 141.42 142.01 113.12 165.09 44.71 103.56 232.03 112.86 217.64 170.17 109.40 185.79 93.64 260.95 185.90 111.14 46 ER7b ExonRegion 0 50.37 49.21 112.24 83.95 75.99 77.75 85.26 138.62 156.61 99.55 165.84 61.48 98.49 237.45 87.04 216.37 170.33 120.47 177.11 87.66 248.14 171.68 147.42 47 ER7c ExonRegion 0 43.81 47.79 107.47 84.91 65.56 80.14 84.07 132.92 151.92 104.25 170.48 53.25 106.46 234.69 90.52 223.80 175.28 113.45 187.30 85.32 258.72 182.31 135.97 48 ER8a ExonRegion 0 0.00 0.00 0.00 1.23 0.00 0.00 0.80 0.00 0.00 0.78 0.81 0.00 0.00 2.34 1.24 1.80 2.00 1.47 1.93 0.00 0.00 0.00 0.00 49 E8_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 1.34 2.47 0.00 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER8b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.64 0.00 0.00 2.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E9_Ab NovelBoundary 0 15.71 29.47 64.34 52.34 26.74 32.48 57.10 86.83 90.19 53.64 73.07 35.56 45.29 94.12 38.07 70.75 92.94 63.05 121.51 41.16 110.77 84.99 39.44 52 ER9a ExonRegion 0 33.16 44.57 107.32 83.48 63.77 69.23 82.20 137.99 154.08 107.52 166.55 58.09 104.35 217.23 93.57 200.37 179.62 108.25 193.78 85.99 251.96 173.11 116.98 53 ER9b ExonRegion 0 17.34 72.38 93.01 72.09 56.44 116.33 70.06 111.13 132.20 94.17 148.56 100.98 84.94 212.55 97.22 161.16 146.13 106.40 142.84 81.58 193.11 141.49 126.03 54 E9a_E10a KnownJunction 0 21.11 105.05 102.21 83.24 66.13 115.96 75.69 105.81 139.35 93.37 152.62 83.58 59.57 333.98 113.48 221.48 112.11 102.39 144.38 77.28 164.76 185.90 166.12 55 ER10a ExonRegion 0 27.19 59.62 96.70 82.05 62.52 116.59 76.73 106.90 137.29 94.18 129.25 58.12 77.91 225.92 95.40 184.31 116.46 95.63 132.47 62.68 179.41 144.33 128.24 56 E10_Da KnownBoundary 0 9.78 0.00 11.89 1.66 0.00 0.00 1.63 2.22 1.79 0.00 7.11 0.00 6.82 11.83 20.89 24.69 16.55 0.00 0.00 3.00 0.00 11.39 3.76 57 E10a_E11a KnownJunction 0 55.27 64.92 101.30 69.72 40.32 106.13 57.68 105.15 142.19 66.46 121.82 49.37 59.41 150.39 72.56 121.68 97.24 102.06 152.47 67.69 166.43 77.95 105.25 58 E10a_E14a KnownJunction 0 0.00 0.00 0.00 1.93 0.00 0.00 1.77 0.00 2.66 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER10b ExonRegion 0 2.35 1.17 3.56 2.80 0.61 0.42 1.99 6.45 0.75 0.20 7.95 3.40 2.58 18.38 20.17 8.92 11.45 2.74 4.39 1.15 6.07 2.82 8.82 60 ER11a ExonRegion 0 24.19 44.57 90.52 63.02 35.79 74.29 53.72 85.86 115.53 83.47 75.40 37.66 47.14 158.08 64.52 133.41 83.90 84.78 112.88 70.17 153.59 100.57 111.19 61 E11a_E12a KnownJunction 0 53.12 29.27 121.40 115.84 55.86 84.38 82.36 121.41 144.44 89.02 99.24 67.07 83.11 176.35 60.70 151.58 87.52 83.86 112.29 64.56 204.98 125.53 121.47 62 ER12a ExonRegion 0 33.07 48.26 114.94 86.19 62.11 126.92 68.09 132.28 152.78 91.66 106.54 42.26 71.35 203.82 62.94 147.66 107.57 83.47 107.92 70.21 202.89 104.12 113.94 63 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 14.93 7.00 4.45 7.35 4.68 3.94 0.00 0.00 3.15 0.00 0.00 64 E12a_E14a KnownJunction 0 23.93 39.47 132.93 52.47 44.23 100.51 49.20 126.02 112.47 75.72 67.39 25.81 68.18 133.79 45.61 91.09 78.07 74.49 120.94 43.40 168.90 63.38 109.44 65 ER13a ExonRegion 0 0.00 0.00 0.48 0.00 1.36 0.94 3.38 1.33 2.54 0.88 0.97 5.46 3.99 7.93 4.58 8.65 3.05 3.35 4.87 1.10 1.36 0.00 3.74 66 ER14a ExonRegion 0 24.42 33.98 104.30 47.31 34.89 79.10 57.39 99.15 114.89 67.67 89.95 53.29 62.05 139.49 47.65 126.43 75.73 93.38 131.15 80.85 190.66 94.84 124.41 67 E14a_E15a KnownJunction 0 21.49 33.61 135.18 98.76 35.23 83.59 58.47 107.82 107.20 77.50 96.92 48.47 39.61 102.07 64.90 98.78 102.57 86.47 155.20 84.12 182.74 62.09 64.96 68 ER14b ExonRegion 0 27.13 39.10 118.03 80.41 40.01 94.36 58.13 99.39 118.96 72.72 106.40 52.54 69.71 142.18 52.35 104.70 90.92 100.28 179.83 84.91 211.76 97.74 119.07 69 ER15a ExonRegion 0 24.93 38.29 103.77 67.35 20.45 82.60 41.85 85.08 90.80 65.92 76.83 48.40 25.21 117.91 56.57 90.57 88.92 76.42 98.92 61.28 133.99 72.74 75.88 70 E15_Da KnownBoundary 0 3.11 0.00 0.00 1.86 0.00 0.00 2.12 6.12 1.59 1.32 5.37 0.00 0.00 11.83 0.00 3.33 26.74 1.58 0.00 0.00 3.15 0.00 0.00 71 E15a_E16a KnownJunction 0 26.08 38.09 104.88 43.38 24.53 83.76 39.66 77.10 82.32 53.27 47.70 17.56 14.28 80.23 29.54 74.60 65.64 69.85 91.01 99.58 70.67 55.11 73.24 72 E15a_E17a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 11.45 0.00 73 ER15b ExonRegion 0 0.33 0.00 0.94 0.37 1.44 1.97 1.90 1.86 3.39 0.27 2.18 0.00 2.07 9.23 2.38 7.73 12.37 0.16 0.00 0.00 4.11 2.24 3.25 74 I15_AR1 ActiveIntronRegion 0 0.76 0.74 3.30 0.60 2.45 3.09 2.40 5.64 6.55 1.71 6.05 1.89 2.11 11.29 9.68 15.36 9.93 4.05 3.81 1.61 4.25 2.90 4.61 75 ER16a ExonRegion 0 19.78 39.30 105.56 51.86 35.27 85.29 50.70 78.75 96.23 58.10 70.32 28.26 37.35 104.98 56.18 161.09 76.52 102.70 122.67 86.34 129.66 63.00 127.61 76 E16a_E17a KnownJunction 0 32.08 57.62 113.86 74.18 71.99 91.31 62.62 66.01 99.16 83.35 60.49 18.91 47.07 141.21 56.99 112.19 57.69 101.06 192.85 99.84 129.42 99.44 124.72 77 ER16b ExonRegion 0 28.57 45.47 108.10 57.83 62.69 81.47 55.61 78.03 102.25 72.75 76.63 33.09 39.53 126.57 57.61 164.10 67.67 114.96 181.34 91.34 138.05 81.55 146.41 78 I16 Intron 0 5.48 3.51 4.72 2.25 3.79 4.41 2.69 6.03 6.12 2.00 7.02 4.05 3.60 11.66 4.89 17.57 9.96 5.66 3.14 3.15 3.39 5.52 5.97 79 I16_AR1 ActiveIntronRegion 0 4.29 3.26 3.00 1.70 4.01 5.05 2.16 7.51 7.30 0.68 7.59 2.83 3.77 11.81 4.05 17.60 5.84 2.24 3.35 2.21 3.27 5.16 5.91 80 I16_SR2 SilentIntronRegion 0 7.62 4.86 7.63 3.41 4.66 5.15 3.57 7.25 7.60 3.95 8.22 5.17 5.23 13.95 5.44 20.03 16.49 8.88 4.01 4.63 3.50 6.34 8.41 81 I16_AR2 ActiveIntronRegion 0 4.07 1.47 2.56 1.15 1.94 1.99 2.30 0.88 1.06 0.69 4.19 4.88 0.00 8.03 6.40 14.97 5.55 6.79 1.15 2.31 4.06 5.41 1.37 82 E17_Aa NovelBoundary 0 10.82 21.31 6.36 1.76 0.00 10.45 1.63 8.67 6.80 1.37 2.32 0.00 6.66 9.77 6.30 10.25 13.28 8.58 0.00 8.37 5.68 3.12 0.00 83 ER17a ExonRegion 0 21.17 44.79 101.31 53.26 69.06 85.00 47.30 72.31 97.71 75.39 71.20 33.70 20.28 120.10 77.71 128.12 69.76 88.39 168.82 81.89 159.02 74.73 110.24 84 E17_Da KnownBoundary 0 27.56 51.77 106.50 53.67 70.03 89.72 51.85 69.25 89.50 70.24 77.34 24.16 6.82 85.70 65.76 139.79 67.32 70.39 142.31 72.48 171.99 63.87 103.63 85 E17a_E18a KnownJunction 0 0.00 0.00 5.32 1.63 7.72 5.11 4.06 13.35 11.20 1.67 0.00 0.00 0.00 2.12 0.00 0.00 0.00 2.49 4.52 2.49 2.97 0.00 0.00 86 ER17b ExonRegion 0 20.01 31.20 89.09 41.10 48.59 49.55 35.36 55.47 72.17 51.69 83.20 30.90 21.53 107.04 94.88 126.99 78.62 57.70 94.98 66.68 140.99 63.45 89.50 87 E17_Db NovelBoundary 0 13.19 12.43 24.19 17.61 6.62 25.04 13.65 12.28 10.53 14.88 29.38 22.81 12.34 19.72 33.87 59.73 29.36 26.03 29.18 32.41 47.94 45.93 44.64 88 E17c_E18a KnownJunction 0 30.45 23.68 89.68 48.55 46.94 28.56 32.95 47.03 67.65 47.01 63.70 24.61 32.95 92.77 68.36 110.74 87.98 49.50 62.97 77.92 148.39 50.70 91.94 89 ER17c ExonRegion 0 23.58 20.34 77.20 41.86 35.93 31.17 36.13 45.93 65.81 45.71 75.11 41.44 32.16 91.18 79.99 119.31 83.94 53.58 74.17 68.08 143.56 57.45 77.61 90 ER18a ExonRegion 0 22.90 38.83 61.82 46.25 37.87 71.39 43.74 57.29 74.12 52.61 62.06 18.48 18.58 105.21 63.83 98.98 61.40 39.54 82.16 46.82 105.69 61.81 79.62 91 E18_Da KnownBoundary 0 20.45 29.01 41.99 30.93 12.31 38.90 20.58 61.86 71.24 58.29 60.33 19.81 33.60 80.52 58.10 31.36 51.80 17.49 60.14 24.42 99.59 45.19 50.02 92 ER18b ExonRegion 0 91.09 93.81 109.77 89.50 81.50 66.80 70.69 97.87 86.80 64.34 47.13 32.27 42.86 67.69 58.00 46.60 34.30 19.33 62.82 42.03 42.88 88.34 48.27