Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-25C19.2 Gene 0 2.71 3.19 3.12 3.18 6.10 2.35 10.56 4.04 2.37 0.97 0.83 9.61 9.28 0.57 1.92 3.81 2.35 4.32 0.45 6.37 1.26 0.30 0.84 2 443652 Transcript 0 1.37 1.54 1.56 1.63 2.88 1.19 5.06 2.02 1.08 0.52 0.32 5.72 4.72 0.25 0.79 1.47 0.98 1.81 0.18 2.74 0.49 0.16 0.32 3 ER1a ExonRegion 0 1.17 2.24 1.51 1.12 5.16 1.01 8.03 2.13 2.54 0.00 1.60 8.68 4.39 0.74 3.15 7.37 3.64 6.58 0.88 8.80 2.43 0.00 1.62 4 E1_Da NovelBoundary 0 0.00 0.00 1.71 0.00 0.00 0.00 17.71 6.41 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 4.77 6.92 9.32 15.28 6.12 0.00 0.00 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 Ix Intron 0 24.13 8.12 8.54 8.82 10.17 2.08 12.37 8.31 6.23 2.98 1.11 12.59 19.16 1.31 4.37 8.49 6.22 3.01 2.85 8.36 1.79 0.80 4.27 7 Ix_AR5 ActiveIntronRegion 0 4.92 1.84 2.11 3.41 3.11 1.18 10.09 4.32 5.70 1.99 2.00 10.17 13.80 1.63 2.51 14.89 8.10 1.66 5.34 10.98 1.42 0.00 4.93 8 Ix_SR3 SilentIntronRegion 0 4.77 2.78 2.77 4.73 3.96 1.76 7.88 4.28 3.67 1.77 0.86 8.70 15.59 1.18 2.25 6.39 6.59 3.63 2.59 7.79 2.44 0.54 5.10 9 Ix_AR4 ActiveIntronRegion 0 6.26 8.66 9.72 10.09 8.87 1.08 18.17 10.06 10.24 4.05 1.60 16.66 22.56 0.79 2.58 8.79 7.03 3.70 2.64 6.29 1.30 1.23 3.13 10 Ix_SR2 SilentIntronRegion 0 5.21 2.78 11.99 8.28 6.09 0.36 12.31 9.98 3.80 6.20 0.09 20.66 23.45 0.00 6.06 4.40 3.03 0.00 0.00 6.28 0.00 2.59 1.41 11 Ix_AR3 ActiveIntronRegion 0 17.23 12.17 15.71 16.42 15.16 3.20 17.22 14.15 9.70 6.48 0.49 21.34 29.40 2.49 7.38 5.49 2.58 1.39 0.69 10.74 0.82 1.42 3.13 12 Ix_AR2 ActiveIntronRegion 0 28.14 15.99 28.42 17.86 47.73 7.34 25.55 19.67 7.38 3.69 0.00 10.88 29.91 3.73 6.51 8.60 2.77 4.10 1.72 10.93 3.04 0.00 0.00 13 Ix_SR1 SilentIntronRegion 0 165.52 26.44 16.66 14.92 33.99 3.59 22.24 12.71 5.26 2.50 0.00 9.09 22.80 0.54 11.55 16.19 6.98 6.36 7.20 5.82 2.34 0.52 5.22 14 Ix_AR1 ActiveIntronRegion 0 97.45 27.29 26.75 20.53 27.62 4.17 13.57 19.10 11.02 2.80 2.79 16.93 19.65 1.65 10.75 9.82 6.82 1.52 1.97 10.10 1.37 1.29 3.59 15 E2_Aa NovelBoundary 0 63.20 54.60 21.82 24.67 12.39 2.61 12.32 20.45 10.73 4.84 0.00 6.30 0.00 2.47 0.00 10.00 12.16 0.00 0.00 2.75 3.09 2.33 4.18 16 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.06 0.00 0.00 8.77 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E2_Da NovelBoundary 0 117.95 75.05 15.58 11.49 81.75 11.36 39.39 12.65 7.03 3.22 2.63 26.56 18.02 2.35 11.99 4.10 4.21 2.57 4.05 8.82 0.00 3.12 0.00 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 Ix Intron 0 22.47 20.99 14.61 15.95 12.41 3.43 14.26 8.47 7.71 4.22 0.29 18.76 18.67 0.94 3.91 5.33 6.42 1.03 3.10 7.32 0.49 0.47 2.20 20 Ix_AR2 ActiveIntronRegion 0 25.40 20.13 15.52 16.45 13.91 3.30 14.03 10.56 8.83 4.44 0.39 17.73 16.88 0.99 4.03 6.24 5.61 1.20 3.19 8.72 0.44 0.63 2.06 21 Ix_AR1 ActiveIntronRegion 0 13.89 23.65 11.97 14.54 8.01 3.83 15.01 2.30 4.40 3.57 0.00 21.95 24.11 0.80 3.56 2.66 8.86 0.55 2.85 3.17 0.66 0.00 2.63 22 E3_Aa NovelBoundary 0 10.67 17.96 4.49 16.15 15.53 0.00 27.56 6.12 7.49 6.88 0.00 12.60 27.27 2.47 16.56 11.19 8.13 1.58 4.80 8.82 0.00 0.00 0.00 23 ER3a ExonRegion 0 5.68 5.46 6.30 7.01 9.23 4.92 17.26 7.88 2.82 2.62 0.00 11.17 18.72 0.51 0.79 0.00 1.27 2.47 0.00 4.90 0.00 0.80 0.00