Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CHUK Gene 0 32.07 53.46 43.08 37.45 55.74 51.31 69.62 44.01 42.67 27.98 83.62 104.77 77.56 85.91 51.26 61.11 72.27 34.70 22.53 57.07 19.19 54.94 31.86 2 370397 Transcript 0 26.11 63.32 33.38 34.31 56.14 73.39 84.59 44.62 59.32 35.83 167.41 203.74 154.10 178.99 66.28 124.00 160.40 56.75 41.33 97.38 42.34 95.94 66.34 3 485693 Transcript 0 7.37 22.97 11.44 14.20 23.77 18.70 31.09 14.59 16.97 11.54 9.72 11.65 9.91 10.28 4.55 8.95 9.84 22.26 9.58 21.61 4.21 7.08 3.37 4 474023 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 462242 Transcript 0 14.82 33.74 25.55 16.09 21.15 9.10 38.62 18.07 18.09 9.51 16.46 15.00 11.11 15.80 7.21 21.21 12.72 19.38 13.84 37.28 1.02 9.86 6.79 6 ER1a ExonRegion 1 9.00 25.39 3.71 1.65 6.90 25.18 22.10 3.42 7.96 4.16 29.25 1.49 3.49 45.44 10.53 32.24 41.86 31.97 11.20 12.48 25.64 12.11 25.79 7 E1a_E2a KnownJunction 1 0.00 23.02 8.66 5.23 25.47 14.03 6.76 2.42 20.31 14.45 82.49 7.20 33.11 43.68 19.28 31.27 166.90 15.63 9.13 35.73 51.28 12.19 11.69 8 ER2a ExonRegion 0 1.69 20.42 19.88 13.28 14.14 9.90 24.00 22.89 38.03 18.27 108.85 96.62 72.37 133.98 50.36 102.84 136.94 87.37 35.01 68.13 48.30 62.11 70.94 9 E2a_E3a KnownJunction 0 3.78 37.43 16.41 15.15 22.16 19.02 34.76 43.13 41.87 25.25 92.66 114.64 97.40 76.17 58.97 143.72 141.00 110.43 40.75 83.03 26.44 116.40 79.64 10 ER3a ExonRegion 0 11.06 33.63 22.29 25.75 28.39 85.98 73.29 34.70 38.47 28.38 162.41 122.32 105.51 106.88 38.02 93.66 134.45 51.90 20.61 93.36 27.75 75.37 44.36 11 E3a_E4a KnownJunction 1 40.45 70.05 22.32 27.94 46.86 95.06 75.52 48.59 43.60 22.54 187.84 210.22 149.18 130.85 54.52 43.66 155.68 43.15 22.12 89.16 49.61 63.74 38.93 12 ER4a ExonRegion 0 23.86 68.44 18.43 30.61 24.54 44.17 58.54 40.79 47.82 30.15 167.22 206.82 141.71 138.98 60.59 80.25 148.02 42.92 34.27 79.09 27.80 107.09 37.00 13 E4a_E5a KnownJunction 0 26.67 71.90 19.04 40.32 22.24 34.81 39.75 32.45 44.04 41.53 157.41 224.17 173.69 160.81 67.00 91.51 99.67 39.96 36.05 63.53 13.84 134.59 63.60 14 ER5a ExonRegion 0 28.44 61.88 22.28 33.03 33.61 44.38 58.39 53.27 61.13 37.28 199.87 297.47 207.42 205.59 65.16 131.31 172.09 52.63 24.70 109.87 30.16 119.11 68.86 15 E5a_E6a KnownJunction 1 40.97 80.25 27.67 31.86 37.95 41.91 76.93 61.53 67.36 29.60 185.73 262.44 213.46 204.60 52.29 146.12 186.82 35.65 36.33 95.94 22.43 120.69 70.00 16 ER6a ExonRegion 1 19.99 70.57 25.12 39.71 49.23 66.08 82.62 38.74 54.74 36.99 184.40 270.54 243.00 209.84 41.68 110.43 169.78 45.23 42.44 85.79 41.45 103.37 68.85 17 E6a_E7a KnownJunction 0 13.56 69.59 23.03 35.39 38.20 118.57 80.02 53.19 58.97 50.66 145.56 334.31 237.32 214.14 78.50 113.56 162.79 48.29 31.91 86.42 52.08 99.38 68.89 18 ER7a ExonRegion 1 15.81 46.17 26.45 32.46 56.19 69.39 90.11 44.23 64.31 37.22 169.26 308.43 216.00 180.64 50.11 143.26 151.00 40.27 38.66 119.35 43.67 97.54 76.54 19 E7a_E8a KnownJunction 1 13.93 27.43 40.48 33.20 89.73 71.78 110.50 59.43 58.91 45.77 150.14 276.39 209.89 383.60 65.89 171.15 151.94 61.93 64.28 128.86 48.12 76.30 86.99 20 ER8a ExonRegion 0 24.73 58.80 31.16 30.69 64.52 68.56 95.48 68.75 71.52 42.06 200.90 276.64 227.03 228.49 68.53 156.42 188.00 73.72 57.28 127.86 47.67 111.97 77.44 21 E8a_E9a KnownJunction 1 30.01 93.93 12.83 37.39 83.45 59.00 116.55 43.25 71.27 41.80 142.67 153.50 129.37 183.00 48.46 136.97 150.44 46.47 65.98 122.66 30.21 125.53 60.69 22 E9_Aa NovelBoundary 0 0.00 0.00 2.90 0.00 0.00 0.00 1.72 0.00 1.79 0.00 0.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 13.46 2.88 0.00 0.00 0.00 23 ER9a ExonRegion 1 30.16 60.98 27.64 29.29 57.53 78.00 111.72 54.32 79.66 34.88 196.87 218.99 194.91 196.14 55.81 121.92 194.58 56.71 47.36 115.05 44.98 87.46 63.85 24 E9a_E10a KnownJunction 1 28.00 67.49 24.25 34.36 79.71 96.42 170.16 65.88 84.81 45.99 193.63 152.15 162.81 188.36 42.40 95.53 123.42 53.97 41.22 93.32 31.75 85.24 43.28 25 ER10a ExonRegion 1 20.00 37.57 28.20 30.46 62.89 81.49 87.76 49.95 73.87 38.81 191.12 224.95 217.38 194.39 49.93 112.01 175.74 41.64 40.79 83.27 41.27 104.12 60.54 26 E10_Da NovelBoundary 0 2.89 0.00 1.80 3.50 0.00 8.40 24.60 8.71 1.77 3.89 10.00 0.00 20.13 12.24 0.00 4.02 11.87 11.77 0.00 2.56 0.00 20.33 7.34 27 E10a_E11a KnownJunction 0 13.56 47.16 27.44 32.36 24.53 74.84 70.70 42.92 70.77 33.52 152.09 159.05 79.05 131.56 52.29 66.31 122.02 23.01 21.18 83.86 27.06 102.38 27.23 28 ER11a ExonRegion 0 35.75 51.10 45.54 33.93 57.28 84.43 116.88 37.54 62.64 41.57 172.35 267.29 184.37 207.41 74.14 121.11 163.44 37.48 41.84 103.64 32.52 122.06 57.65 29 E11a_E12a KnownJunction 0 58.75 66.37 37.82 36.43 91.43 140.54 153.77 46.41 64.96 42.84 184.10 274.14 227.10 223.44 76.27 107.24 138.76 35.53 28.71 84.56 18.97 102.57 84.59 30 ER12a ExonRegion 0 27.38 69.29 26.98 29.59 84.52 90.74 75.91 49.83 55.41 35.07 176.47 245.80 189.76 183.51 61.77 117.64 140.74 49.23 33.88 99.79 28.12 99.52 74.41 31 E12a_E13a KnownJunction 1 10.22 70.65 38.76 33.43 104.41 97.16 63.42 63.42 51.50 47.25 221.21 196.71 215.08 210.25 53.53 120.74 167.65 38.43 67.30 113.45 30.33 140.47 118.31 32 ER13a ExonRegion 0 30.12 75.96 41.85 45.09 90.62 98.25 101.91 56.21 57.68 42.13 197.40 252.42 201.67 178.58 73.35 143.41 171.28 67.32 57.06 118.27 35.61 105.14 83.21 33 E13a_E14a KnownJunction 0 45.19 73.80 51.36 61.90 85.65 118.91 102.19 44.44 74.80 37.85 171.52 198.06 167.85 187.71 111.63 207.38 229.08 73.66 39.91 114.99 31.32 89.89 110.80 34 E13a_E15a NovelJunction 0 0.00 3.35 2.75 5.33 0.00 2.38 12.23 2.14 2.92 1.50 7.84 0.00 0.00 0.00 0.00 0.00 0.00 2.53 4.80 3.26 2.66 0.00 3.41 35 ER14a ExonRegion 0 30.79 71.57 62.40 63.02 92.66 100.06 106.60 47.09 81.40 49.41 235.25 232.46 211.58 218.31 89.80 205.27 240.06 84.91 62.94 139.36 66.40 118.16 113.58 36 E14a_E15a KnownJunction 0 52.01 72.88 76.08 69.75 71.39 83.76 101.44 38.65 96.12 58.16 219.21 260.48 218.01 279.42 101.98 172.86 227.96 85.06 96.38 148.99 84.88 132.57 103.20 37 ER15a ExonRegion 0 43.29 87.20 55.81 52.92 79.25 66.58 90.63 53.08 83.08 47.93 179.85 233.08 138.65 200.21 96.56 158.33 214.62 85.42 53.86 116.69 54.87 111.49 74.40 38 E15a_E16a KnownJunction 0 61.12 153.33 69.01 51.87 106.96 104.94 160.75 50.73 67.07 58.05 209.42 174.21 74.02 212.02 125.35 176.19 205.14 87.09 45.55 111.34 98.04 120.94 70.42 39 ER16a ExonRegion 1 33.31 113.07 60.78 42.96 73.05 93.12 106.18 50.99 74.85 44.00 217.84 216.39 76.35 228.38 94.35 174.05 191.06 68.85 37.91 110.34 79.99 99.68 68.19 40 E16a_E17b KnownJunction 0 40.67 118.47 54.34 32.60 55.94 134.75 119.68 44.32 72.40 26.06 206.53 293.95 113.95 235.68 143.15 183.37 189.53 58.16 44.71 129.62 67.77 94.05 64.45 41 I16_AR1 ActiveIntronRegion 0 10.97 9.22 5.02 9.86 12.13 4.75 18.65 5.00 6.87 6.36 5.32 8.70 7.91 14.29 6.58 8.66 13.90 10.71 4.13 13.09 8.20 4.72 8.08 42 I16_SR2 SilentIntronRegion 0 3.76 7.23 6.81 3.25 11.41 10.11 18.58 8.23 6.22 6.99 2.06 7.15 11.13 9.25 2.49 8.98 9.39 5.23 3.96 10.21 1.96 4.07 4.17 43 E17_Aa NovelBoundary 0 7.11 29.60 6.80 10.12 15.28 5.05 29.28 7.27 5.38 0.00 14.79 6.30 0.00 16.48 4.45 34.61 4.30 11.07 4.05 15.34 5.19 9.12 7.00 44 ER17a ExonRegion 0 7.05 13.03 6.01 7.05 12.76 9.52 20.61 10.00 10.70 6.15 8.69 13.51 15.27 12.43 5.34 10.04 15.31 7.21 5.15 12.09 3.36 7.12 4.46 45 E17_Ab KnownBoundary 0 6.74 20.33 1.71 4.73 19.95 18.97 27.12 11.71 12.33 2.63 0.00 0.00 13.64 7.06 4.45 11.54 0.00 6.67 3.95 20.96 6.05 12.98 3.84 46 ER17b ExonRegion 0 41.10 96.49 66.78 43.43 78.63 109.32 94.17 60.37 81.89 39.94 195.34 181.07 146.32 206.91 94.90 168.54 170.34 116.95 46.65 116.09 74.95 101.79 82.07 47 E17_Da KnownBoundary 0 5.78 6.31 7.30 8.26 0.00 15.45 23.58 5.96 5.82 6.98 7.00 6.15 6.82 7.59 4.45 0.00 8.51 12.81 0.00 16.94 2.97 5.27 8.54 48 E17a_E17c KnownJunction 0 20.67 57.16 65.02 44.88 45.59 80.47 86.78 67.94 74.57 27.02 198.00 154.85 101.29 159.57 114.96 201.31 201.22 155.37 71.44 138.13 79.14 104.95 83.83 49 ER17c ExonRegion 0 5.23 10.49 4.81 8.75 14.12 4.94 19.80 6.57 13.26 7.97 13.92 13.47 9.27 12.06 6.30 11.01 9.27 15.58 4.39 17.17 3.52 6.78 2.91 50 E17_Ac KnownBoundary 0 9.85 5.85 4.91 15.98 18.51 0.00 12.63 16.55 10.73 6.12 11.48 11.85 6.17 13.77 10.63 7.60 0.00 22.76 7.91 22.12 2.97 5.76 0.00 51 ER17d ExonRegion 0 30.65 36.45 83.04 52.10 75.18 60.97 81.60 87.49 96.96 45.24 192.29 217.97 92.99 211.35 114.54 259.38 185.10 158.23 69.83 124.02 77.98 129.82 113.40 52 E17_Ad KnownBoundary 0 47.05 50.12 115.73 54.80 112.73 105.34 129.09 94.39 111.54 56.09 170.10 160.85 101.29 265.06 82.33 223.27 243.29 107.90 64.19 103.42 104.71 136.31 107.56 53 ER17e ExonRegion 0 35.58 61.33 88.11 50.96 114.07 83.97 101.78 72.69 92.11 50.08 231.32 128.56 87.73 224.97 94.92 177.20 218.21 123.41 67.36 127.86 82.26 98.63 81.61 54 E17_Db KnownBoundary 0 0.00 2.57 3.43 0.00 7.89 0.00 10.38 1.73 3.88 2.98 2.16 0.00 0.00 2.47 0.00 8.03 3.46 1.95 18.17 5.88 0.00 0.00 8.62 55 E17b_E17e KnownJunction 0 20.37 70.32 73.86 71.15 108.91 80.69 134.30 69.13 79.02 37.61 178.52 161.45 67.85 232.09 111.01 177.73 157.27 167.68 62.97 93.77 56.53 118.36 70.25 56 ER17f ExonRegion 0 2.42 2.17 3.72 1.05 8.69 4.82 7.28 5.68 4.23 1.69 3.86 4.37 4.39 4.81 1.12 4.91 4.17 2.95 3.45 6.01 0.10 2.89 0.91 57 E17_Ae KnownBoundary 0 0.00 0.00 3.34 0.00 0.00 5.51 6.40 0.00 1.68 0.00 0.00 0.00 8.28 2.47 6.30 0.00 8.98 5.06 0.00 0.00 0.00 0.00 0.00 58 E17_Af KnownBoundary 0 9.93 47.43 10.47 6.46 25.89 29.02 30.91 18.32 11.83 6.88 38.75 44.26 18.18 57.86 9.64 35.63 56.76 24.04 14.40 32.15 21.37 21.06 19.38 59 ER17g ExonRegion 0 22.75 80.33 91.75 72.74 103.69 91.92 130.41 70.65 102.36 52.18 177.83 150.99 60.38 226.56 114.96 193.19 169.58 227.04 72.07 105.85 58.95 116.94 85.53 60 ER17h ExonRegion 0 45.13 116.93 106.35 70.47 109.39 130.58 130.25 81.19 109.31 64.83 192.27 131.16 79.59 204.30 105.81 233.66 191.16 247.92 83.94 124.84 66.95 120.11 98.12 61 E17_Dc KnownBoundary 0 94.09 158.66 125.28 77.48 142.95 192.67 172.72 95.21 118.63 84.45 267.07 144.95 127.59 193.24 111.50 324.62 260.03 265.88 105.70 168.29 81.24 166.25 123.18 62 E17c_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 ER17i ExonRegion 0 64.61 98.46 78.69 45.12 74.16 86.65 87.22 62.57 77.76 53.64 178.29 146.16 92.46 186.43 106.45 159.32 173.79 130.68 57.41 107.72 64.20 106.40 99.81 64 E17_Dd KnownBoundary 0 3.63 18.22 14.72 20.68 31.07 37.31 45.53 29.74 27.26 17.27 25.22 31.36 19.64 15.13 13.35 7.52 13.28 48.91 16.85 52.35 2.53 16.72 0.00 65 E17d_E18a KnownJunction 0 59.42 33.68 70.28 15.35 32.60 16.41 25.35 34.05 16.38 11.77 135.88 83.58 67.04 170.23 114.35 123.39 154.65 26.16 47.06 27.61 43.24 67.85 65.39 66 ER17j ExonRegion 0 12.45 46.65 22.60 31.93 40.32 39.78 58.53 34.82 31.83 22.43 17.87 26.92 20.62 22.09 10.01 18.81 12.13 36.07 12.62 44.66 7.76 13.49 8.59 67 E17_De NovelBoundary 0 27.71 58.61 13.87 11.99 36.42 64.05 84.09 29.86 11.60 10.26 27.11 0.00 34.90 31.49 20.52 12.73 7.85 12.97 9.60 23.65 8.96 13.17 0.00 68 E17e_E18a KnownJunction 0 9.71 42.49 20.08 22.21 42.95 34.41 49.24 15.85 24.83 19.45 4.26 0.00 0.00 0.00 0.00 0.00 8.32 49.50 22.31 28.12 6.30 5.14 0.00 69 I17 Intron 0 13.53 41.65 19.09 17.33 32.55 22.70 46.05 22.55 15.71 11.67 14.02 19.02 13.07 17.94 10.31 14.59 5.63 4.12 11.54 21.79 2.35 11.12 6.89 70 I17_AR1 ActiveIntronRegion 0 13.58 41.83 19.17 17.40 32.68 22.79 46.24 22.64 15.78 11.72 14.08 19.10 13.12 18.02 10.35 14.65 5.66 4.14 11.59 21.88 2.36 11.15 6.92 71 I17 Intron 0 18.14 37.36 22.83 24.67 38.16 31.64 42.50 24.34 24.41 14.54 19.62 21.88 16.87 19.90 13.02 20.41 16.47 20.02 10.84 33.46 4.66 12.47 12.24 72 I17_AR1 ActiveIntronRegion 0 18.16 37.40 22.85 24.70 38.20 31.68 42.55 24.37 24.44 14.56 19.65 21.91 16.89 19.93 13.04 20.43 16.49 20.04 10.86 33.50 4.66 12.49 12.25 73 E18_Aa NovelBoundary 0 46.60 64.79 30.90 30.10 82.34 38.90 85.59 20.54 35.45 10.96 14.37 6.30 25.32 19.31 17.80 28.97 25.71 28.64 13.18 34.64 5.50 21.06 16.05 74 ER18a ExonRegion 0 63.77 91.45 88.39 79.42 100.98 105.61 140.71 69.64 67.49 52.72 171.27 86.24 88.36 179.66 112.42 146.53 148.84 67.94 61.13 98.00 40.79 93.20 68.54 75 E18_Da KnownBoundary 0 24.52 31.51 36.93 13.38 34.21 15.50 43.37 29.24 28.12 11.20 24.95 0.00 25.97 23.90 15.82 46.31 31.14 25.41 13.37 41.74 4.76 11.94 24.24 76 E18a_E19a KnownJunction 0 49.12 91.76 70.70 90.76 104.67 118.74 139.38 52.78 70.34 47.44 127.51 66.32 71.59 108.48 109.77 91.26 81.07 25.29 21.18 53.95 23.54 61.36 46.95 77 ER18b ExonRegion 0 14.82 33.74 25.55 16.09 21.15 9.10 38.62 18.07 18.09 9.51 16.46 15.00 11.11 15.80 7.21 21.21 12.72 19.38 13.84 37.28 1.02 9.86 6.79 78 E18_Db NovelBoundary 0 30.75 27.69 53.31 34.99 27.42 21.64 82.54 24.81 28.65 5.78 20.22 24.76 20.45 19.37 23.86 18.37 11.97 14.26 24.28 50.11 0.00 10.16 7.51 79 I18 Intron 0 46.04 50.63 49.43 17.67 56.91 20.35 63.66 41.09 21.35 9.09 13.99 16.62 18.00 13.21 13.65 23.71 5.58 18.45 12.32 26.23 2.13 13.09 3.55 80 I18_AR1 ActiveIntronRegion 0 46.26 50.87 49.67 17.76 57.18 20.45 63.97 41.29 21.46 9.13 14.05 16.70 18.09 13.27 13.72 23.82 5.61 18.54 12.36 26.34 2.14 13.16 3.57 81 E19_Aa NovelBoundary 0 13.26 71.76 53.58 32.70 68.76 31.52 82.94 44.57 32.32 22.64 17.64 12.60 48.37 14.60 8.90 11.19 6.92 23.63 4.80 68.07 0.00 4.90 12.38 82 ER19a ExonRegion 0 100.58 146.59 137.65 128.11 163.28 132.39 190.84 104.52 91.10 68.13 138.62 186.93 131.63 127.92 141.16 75.86 80.72 31.77 24.56 88.07 15.44 134.74 50.46 83 E19_Da KnownBoundary 0 71.57 92.55 158.75 126.76 182.77 136.80 218.21 130.49 77.98 76.91 131.09 254.03 119.47 125.79 189.26 59.81 61.99 16.21 15.25 107.57 11.12 107.22 14.34 84 ER19b ExonRegion 0 105.62 118.71 131.82 93.06 131.71 91.09 131.00 116.32 72.41 55.72 105.86 176.82 108.86 105.37 145.95 60.41 66.63 20.11 26.12 73.39 11.68 95.13 29.34 85 E19_Db KnownBoundary 0 9.26 0.00 4.55 18.58 7.98 4.43 4.20 6.86 3.36 3.04 5.37 18.46 13.64 7.18 9.39 15.72 0.00 0.00 0.00 9.20 0.00 3.12 7.34 86 ER19c ExonRegion 0 2.79 0.00 1.97 8.08 1.67 3.14 4.34 2.56 1.13 1.48 2.55 8.85 5.64 4.00 6.48 2.84 0.00 0.00 2.35 4.87 0.00 3.65 3.45