Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 USMG5 Gene 0 57.10 212.74 308.42 178.89 1119.83 1247.49 851.78 231.86 209.35 174.62 958.33 185.70 89.29 433.43 830.10 331.19 789.06 119.53 533.10 358.04 371.34 364.60 182.98 2 309579 Transcript 1 220.85 928.65 1589.00 960.28 8269.61 8513.96 6588.77 1365.96 1182.86 860.33 4740.78 99.03 103.56 1521.70 2792.64 1652.05 4159.60 614.71 2570.71 1712.47 1633.33 1757.89 851.84 3 337003 Transcript 0 9.04 2.57 1.83 40.05 3.14 70.81 70.04 22.39 20.40 7.68 14.11 0.00 0.00 36.38 138.70 3.85 4.77 12.27 12.52 127.20 81.98 8.76 11.78 4 369815 Transcript 1 222.26 514.51 65.40 28.93 127.76 233.16 96.67 54.26 59.63 72.72 147.14 6.30 0.00 30.49 85.42 48.19 127.63 188.45 59.39 136.27 19.40 57.99 29.45 5 369811 Transcript 0 9.55 17.21 5.02 0.70 1.74 17.74 3.79 3.46 0.66 4.11 4.00 0.10 3.49 10.54 8.70 7.88 5.53 4.13 15.19 6.88 5.43 1.89 5.05 6 369825 Transcript 0 0.00 0.00 0.27 1.03 1.19 1.45 0.00 0.00 0.00 0.00 1.00 0.00 0.00 4.68 2.23 0.00 0.00 0.00 1.06 6.75 1.27 0.00 0.00 7 IG49_AR1 ActiveIntergenicRegion 0 9.39 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.89 0.00 2.73 0.00 0.00 20.58 23.15 4.85 3.30 0.00 6.02 2.13 2.87 3.35 5.30 8 ER1a ExonRegion 1 147.42 679.29 290.55 185.30 3556.07 4368.53 2997.70 205.15 214.48 167.36 2030.66 32.64 16.05 1031.75 1975.64 726.68 2080.07 74.83 1303.06 789.20 1167.97 775.71 545.76 9 ER1b ExonRegion 1 341.16 1457.25 592.20 324.45 8461.63 9599.31 6910.08 337.48 392.30 340.27 5173.04 61.97 46.31 2717.71 4708.19 1709.34 4961.56 229.41 3043.61 1866.08 2542.46 1959.81 1119.78 10 E1_Da NovelBoundary 0 20.52 30.78 9.64 9.09 23.26 49.52 33.03 6.12 2.98 1.64 19.37 0.00 0.00 6.83 18.54 25.12 31.51 33.49 28.05 26.14 12.36 9.31 8.45 11 E1a_E2b KnownJunction 0 222.26 514.51 65.40 28.93 127.76 233.16 96.67 54.26 59.63 72.72 147.14 6.30 0.00 30.49 85.42 48.19 127.63 188.45 59.39 136.27 19.40 57.99 29.45 12 E1a_E3a KnownJunction 0 9.04 2.57 1.83 40.05 3.14 70.81 70.04 22.39 20.40 7.68 14.11 0.00 0.00 36.38 138.70 3.85 4.77 12.27 12.52 127.20 81.98 8.76 11.78 13 E1a_E4a KnownJunction 1 220.85 928.65 1589.00 960.28 8269.61 8513.96 6588.77 1365.96 1182.86 860.33 4740.78 99.03 103.56 1521.70 2792.64 1652.05 4159.60 614.71 2570.71 1712.47 1633.33 1757.89 851.84 14 ER2a ExonRegion 0 9.55 17.21 5.02 0.70 1.74 17.74 3.79 3.46 0.66 4.11 4.00 0.10 3.49 10.54 8.70 7.88 5.53 4.13 15.19 6.88 5.43 1.89 5.05 15 E2_Ab KnownBoundary 0 19.78 17.83 1.83 0.00 0.00 25.27 4.33 4.89 0.00 3.33 4.47 0.00 6.82 9.06 0.00 3.85 4.77 1.62 20.99 5.50 8.59 3.12 7.94 16 E2_Ac KnownBoundary 0 47.49 114.26 30.37 15.48 54.58 66.33 43.24 22.02 20.51 31.59 27.69 6.30 0.00 33.02 84.43 44.01 38.80 27.61 33.60 33.11 2.35 7.59 0.00 17 ER2b ExonRegion 0 104.65 279.96 36.22 16.51 78.19 128.16 57.96 22.47 22.09 38.36 87.20 5.29 4.69 48.36 142.81 59.44 90.22 69.80 68.66 77.30 12.98 18.75 20.56 18 ER2c ExonRegion 1 22.22 70.16 55.36 26.25 44.92 95.75 38.33 56.27 47.34 65.11 115.79 36.68 21.99 96.06 159.12 70.87 81.47 89.17 68.78 104.21 26.36 34.12 17.51 19 E2a_E3a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 2.90 0.00 0.00 0.00 0.00 2.00 0.00 0.00 9.36 4.45 0.00 0.00 0.00 0.00 11.38 2.53 0.00 0.00 20 E2a_E4a KnownJunction 0 3.78 257.91 49.26 19.28 55.60 341.74 133.86 49.62 44.85 77.31 101.13 31.21 39.12 81.58 136.23 14.78 88.27 18.36 17.32 64.56 23.54 27.37 0.00 21 E3_Aa NovelBoundary 0 36.23 25.26 6.80 9.26 7.89 11.58 12.85 9.00 4.14 6.10 7.26 24.16 6.82 11.95 9.64 12.39 8.32 3.65 0.00 2.75 13.10 3.12 0.00 22 ER3a ExonRegion 0 7.58 10.46 4.22 22.86 46.09 62.60 37.04 15.64 13.76 8.47 17.20 5.32 4.81 43.68 89.47 10.01 5.81 4.53 13.72 55.35 39.96 6.93 9.17 23 E3a_E4a KnownJunction 0 0.00 0.00 3.40 23.11 0.00 6.81 5.83 12.73 22.80 1.34 9.00 6.30 6.66 39.61 114.22 19.31 0.00 7.63 13.37 81.24 27.80 8.45 15.45 24 I3 Intron 0 14.28 29.61 12.92 17.03 21.79 18.07 16.87 17.79 9.22 13.33 14.62 29.21 40.67 18.81 17.46 12.22 16.02 2.27 4.19 9.61 1.27 12.17 3.87 25 I3_SR1 SilentIntronRegion 0 14.35 29.75 12.98 17.11 21.90 18.16 16.95 17.88 9.27 13.39 14.69 29.34 40.85 18.90 17.54 12.28 16.10 2.28 4.21 9.65 1.28 12.23 3.88 26 E4_Aa NovelBoundary 1 42.08 59.92 28.44 30.40 77.84 36.23 31.44 26.29 21.01 10.58 4.63 30.61 40.26 21.01 27.44 15.55 4.02 0.00 8.47 14.25 2.97 14.33 12.38 27 ER4a ExonRegion 1 93.19 348.70 574.20 265.44 960.31 1049.39 769.39 416.13 441.82 376.24 2062.73 450.63 211.78 475.27 1013.23 381.45 1888.42 123.20 609.73 471.96 1034.92 409.67 166.99 28 E4_Da NovelBoundary 1 5.93 29.21 21.11 11.92 18.76 11.07 8.08 8.09 5.50 2.71 10.37 24.31 41.39 7.77 4.45 3.59 0.00 0.00 0.00 3.13 0.00 6.25 0.00 29 E4a_E5a KnownJunction 1 204.26 284.42 998.04 519.18 72.92 166.67 133.02 853.11 872.01 681.06 5980.36 1175.18 452.57 959.98 2164.54 454.67 4955.39 196.61 703.55 1029.39 2987.49 439.84 152.54 30 E5_Aa NovelBoundary 1 12.59 15.72 18.04 31.66 39.73 27.03 36.70 17.33 13.08 10.96 4.84 43.51 73.53 25.60 4.45 11.71 0.00 1.62 12.14 11.76 2.66 16.10 11.35 31 ER5a ExonRegion 0 59.95 117.95 1324.24 768.30 63.47 92.04 69.69 1095.64 869.91 710.22 3682.42 469.96 230.72 1697.00 3016.71 1359.89 2625.84 492.14 2343.64 1335.30 1020.63 1788.73 784.37 32 E5_Da NovelBoundary 0 39.27 22.23 42.46 43.25 36.08 25.78 14.44 42.14 23.64 18.45 18.69 18.61 27.43 28.96 33.01 47.25 16.27 18.12 25.60 35.28 2.97 15.31 3.24 33 E5a_E6a KnownJunction 1 16.89 121.82 637.17 436.44 89.13 38.56 36.92 613.48 524.71 330.91 572.36 329.81 213.78 479.31 1784.17 1244.46 332.77 407.36 1202.86 598.39 102.43 753.60 572.70 34 I5 Intron 0 22.98 18.74 21.22 21.97 37.63 24.24 22.07 18.68 14.38 15.20 12.70 21.75 23.67 24.57 22.55 22.98 12.17 11.16 13.40 16.62 3.09 14.11 7.06 35 I5_AR1 ActiveIntronRegion 0 4.54 13.09 14.09 15.67 24.08 14.15 27.24 11.04 9.47 2.92 4.97 19.43 22.82 23.75 19.89 21.65 15.56 6.68 9.56 9.12 1.89 7.14 6.29 36 I5_SR1 SilentIntronRegion 0 27.21 13.69 10.55 15.77 24.73 16.99 20.25 15.35 7.28 10.62 12.36 21.24 24.07 23.27 18.42 13.99 6.14 16.36 12.21 15.72 3.28 12.91 6.56 37 I5_AR2 ActiveIntronRegion 0 40.73 25.05 31.32 33.97 44.07 28.31 27.70 28.21 20.44 24.21 14.69 30.99 37.86 27.13 28.95 28.09 11.34 11.99 12.09 23.50 4.31 20.10 5.97 38 ER6a ExonRegion 0 111.20 491.93 474.10 312.67 4461.59 4696.34 3136.16 266.92 260.78 163.94 558.57 561.57 250.14 307.04 874.42 326.98 388.69 120.20 409.61 265.54 102.41 237.54 156.09 39 ER6b ExonRegion 0 0.00 0.00 0.54 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.12 2.13 0.00 0.00 0.00