Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HIF1AN Gene 0 35.01 46.29 43.10 31.21 49.70 59.72 52.38 62.90 74.19 56.94 137.88 74.43 65.87 165.56 123.85 160.37 132.90 113.98 92.14 90.24 115.38 70.83 72.55 2 442724 Transcript 0 0.09 0.04 0.61 0.00 0.28 0.88 0.51 0.00 0.08 0.25 0.08 0.00 0.00 0.00 0.32 0.80 0.23 0.04 0.31 0.12 0.29 0.54 0.00 3 299163 Transcript 0 44.73 47.87 51.71 37.44 54.16 70.09 58.04 71.75 80.69 60.54 144.81 58.36 57.92 181.24 150.01 181.18 135.73 127.43 97.15 99.37 126.84 73.15 79.04 4 478787 Transcript 0 2.60 5.90 2.55 4.74 3.74 4.20 10.62 8.32 6.63 3.15 1.24 3.61 7.92 0.84 2.78 6.93 5.75 8.05 7.32 10.85 2.10 3.14 2.40 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 E1a_E2a KnownJunction 0 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 0.26 0.13 0.08 0.00 0.84 2.64 1.54 0.00 0.23 0.74 0.24 0.00 0.00 0.00 0.97 2.41 0.69 0.12 0.93 0.35 0.87 1.61 0.00 8 E2_Ab KnownBoundary 0 0.00 0.00 0.00 1.47 3.23 6.76 7.55 3.37 3.56 1.40 6.32 0.00 0.00 0.00 4.45 3.76 11.13 0.00 11.67 7.73 5.19 10.10 0.00 9 ER2b ExonRegion 1 7.89 14.52 10.17 3.47 11.84 10.30 10.43 18.31 21.17 28.75 79.75 0.40 7.89 33.77 34.00 30.70 86.05 20.24 20.38 35.50 69.58 18.43 17.21 10 E2_Da NovelBoundary 0 3.78 2.50 3.19 1.37 8.66 0.00 7.68 10.06 5.56 4.67 9.90 6.30 6.82 7.30 9.89 11.19 26.18 8.17 9.04 6.33 5.93 2.69 31.50 11 E2a_E3a KnownJunction 1 13.78 23.09 26.11 21.74 16.81 12.15 2.25 73.15 64.41 75.48 213.26 5.55 33.93 134.03 106.56 104.25 270.97 70.14 64.57 162.35 144.93 51.25 56.25 12 I2 Intron 0 4.32 4.15 4.06 4.14 8.93 11.56 12.03 8.12 7.51 4.75 11.83 10.34 9.36 7.74 11.08 17.09 19.59 10.73 13.59 10.26 14.30 7.73 19.06 13 I2_AR1 ActiveIntronRegion 0 4.35 4.17 4.09 4.17 9.00 11.65 12.11 8.18 7.56 4.79 11.92 10.42 9.41 7.80 11.15 17.21 19.72 10.81 13.67 10.31 14.40 7.78 19.20 14 E3_Aa NovelBoundary 0 20.60 11.05 7.21 3.40 23.51 23.96 19.56 8.87 15.45 11.98 10.11 12.30 33.28 0.00 0.00 32.90 28.89 17.49 4.80 23.71 5.99 13.41 15.37 15 ER3a ExonRegion 0 18.17 31.79 37.99 24.83 17.39 12.84 23.21 68.99 80.22 83.11 135.85 75.19 60.58 193.70 149.85 245.94 158.33 168.76 153.11 125.64 124.66 92.54 129.46 16 E3_Ab KnownBoundary 1 13.11 43.87 59.61 35.23 31.15 27.65 30.60 85.84 109.81 91.55 130.56 74.27 44.32 182.41 110.14 327.26 112.76 327.19 228.81 108.85 130.35 62.58 170.98 17 ER3b ExonRegion 0 37.91 85.20 64.30 47.02 87.75 89.70 69.17 80.37 100.66 82.88 210.07 127.30 136.50 213.26 124.10 193.58 193.37 160.72 146.19 121.84 158.70 92.14 105.84 18 E3a_E4a KnownJunction 0 41.12 80.91 70.87 55.14 29.37 97.33 51.80 103.22 101.82 66.91 214.05 182.01 96.91 218.26 200.75 196.87 191.40 145.79 153.51 169.64 133.07 144.39 75.80 19 E3a_E5a NovelJunction 0 7.56 2.83 0.00 5.73 0.00 0.00 4.50 3.33 7.03 6.42 2.68 0.00 0.00 10.01 0.00 16.58 0.00 2.16 0.00 8.76 13.90 13.84 15.79 20 ER4a ExonRegion 0 38.94 74.14 60.17 39.13 34.68 61.66 54.23 96.93 101.50 79.38 233.79 205.78 122.85 257.72 172.03 248.46 225.97 152.85 154.44 127.13 172.87 129.85 112.99 21 E4a_E5a KnownJunction 0 24.97 89.46 64.93 43.68 35.82 75.41 84.17 106.09 113.11 97.86 282.91 226.72 106.32 294.72 166.88 188.24 239.36 191.68 123.67 148.54 181.50 113.65 131.03 22 ER5a ExonRegion 0 44.00 86.48 50.47 38.77 118.32 80.13 106.23 98.50 131.59 98.59 237.96 218.10 140.93 291.00 188.10 259.88 244.11 219.72 175.85 138.38 200.54 130.81 125.13 23 E5_Da KnownBoundary 0 3.63 2.76 0.00 8.19 0.00 0.00 6.36 11.01 6.22 2.95 0.00 0.00 13.64 2.47 0.00 10.42 14.31 20.31 31.25 15.21 3.15 7.72 4.35 24 E5a_E6a KnownJunction 0 60.97 108.53 52.75 32.70 101.10 67.35 81.79 89.79 160.91 103.39 181.26 238.73 161.03 332.16 298.66 352.39 246.84 163.04 229.75 169.19 161.36 156.39 135.22 25 ER5b ExonRegion 0 2.60 5.90 2.55 4.74 3.74 4.20 10.62 8.32 6.63 3.15 1.24 3.61 7.92 0.84 2.78 6.93 5.75 8.05 7.32 10.85 2.10 3.14 2.40 26 ER6a ExonRegion 0 45.14 69.69 48.20 40.50 71.75 84.20 61.45 80.85 123.90 93.35 228.26 189.24 144.73 280.06 168.63 228.77 246.55 174.31 128.96 120.40 158.52 118.12 111.24 27 E6a_E7a KnownJunction 0 22.23 53.21 35.48 36.63 102.21 65.13 65.54 88.27 116.93 76.21 198.42 145.40 95.12 338.28 216.21 211.57 207.29 173.98 130.73 121.76 154.81 75.50 99.19 28 I6_AR1 ActiveIntronRegion 0 4.62 20.34 1.23 0.12 0.97 1.33 8.79 0.00 2.47 0.94 0.00 0.00 13.64 4.43 0.00 0.00 3.30 6.55 9.56 4.26 2.20 0.95 1.60 29 I6_SR2 SilentIntronRegion 0 5.79 20.22 2.52 4.09 8.74 5.23 28.74 1.07 4.50 5.26 0.85 8.40 12.28 9.84 0.43 3.58 5.63 7.45 16.49 6.95 2.46 6.19 5.27 30 I6_AR2 ActiveIntronRegion 0 9.31 8.46 6.48 8.42 11.12 8.44 17.16 12.86 8.64 7.69 10.84 11.95 8.89 6.75 6.75 12.34 10.55 25.23 16.51 14.54 12.05 9.37 9.76 31 I6_AR3 ActiveIntronRegion 0 16.23 6.33 3.68 4.09 6.24 14.26 19.42 8.64 2.47 0.25 7.09 2.41 1.04 3.97 13.54 11.89 9.90 30.59 19.11 6.38 4.41 12.04 8.81 32 ER7a ExonRegion 0 28.01 46.61 42.31 27.98 56.90 61.83 63.36 83.61 121.45 81.79 180.00 131.44 146.71 291.28 143.07 247.89 169.07 156.89 126.77 118.98 139.35 110.82 96.36 33 E7a_E8a KnownJunction 0 50.53 67.75 59.70 21.44 47.62 72.52 90.75 86.34 128.82 106.86 177.99 120.79 118.66 215.20 167.38 236.09 169.14 132.49 138.55 113.58 107.00 117.63 83.14 34 E8_Aa NovelBoundary 0 10.37 3.35 17.30 7.86 0.00 0.00 12.54 13.39 13.86 17.14 2.68 12.00 13.64 7.06 4.45 14.01 0.00 32.62 9.60 6.14 13.78 5.63 8.54 35 ER8a ExonRegion 0 45.97 78.41 62.90 39.51 98.81 128.38 114.83 82.58 116.41 83.23 234.40 175.83 124.01 260.47 153.01 227.78 208.52 137.68 133.73 145.45 158.71 133.31 89.21 36 E8a_E9a KnownJunction 0 45.42 78.01 60.64 35.33 68.25 111.41 69.38 70.20 86.92 81.28 168.62 135.49 113.95 224.68 153.90 194.74 159.61 97.79 110.12 132.18 165.19 86.65 70.85 37 ER9a ExonRegion 0 29.25 60.78 45.31 37.77 53.57 76.82 61.40 60.96 86.71 74.98 124.44 97.17 112.87 220.77 124.43 194.97 139.66 108.73 91.60 116.50 161.85 101.72 113.09 38 E9_Da KnownBoundary 0 34.67 50.39 50.94 50.31 35.40 60.36 87.18 67.28 111.11 79.16 122.40 104.88 98.53 197.78 93.08 292.15 120.71 166.27 121.04 111.22 155.43 140.04 155.36 39 ER9b ExonRegion 0 44.73 47.87 51.71 37.44 54.16 70.09 58.04 71.75 80.69 60.54 144.81 58.36 57.92 181.24 150.01 181.18 135.73 127.43 97.15 99.37 126.84 73.15 79.04 40 IG42_AR1 ActiveIntergenicRegion 0 21.01 17.72 3.94 8.81 54.66 74.84 57.95 19.92 15.66 17.24 66.02 28.61 35.06 56.84 35.30 66.52 56.78 26.48 58.17 35.89 41.84 27.26 31.29 41 IG42_AR2 ActiveIntergenicRegion 0 24.27 37.82 17.65 11.45 37.28 57.09 60.64 27.77 36.81 32.19 100.25 11.83 42.52 62.04 41.39 117.10 62.28 51.49 72.41 38.44 67.58 33.61 52.27 42 IG42_SR1 SilentIntergenicRegion 0 16.10 38.83 28.70 7.96 25.64 65.33 46.25 17.81 45.58 36.25 81.05 3.83 47.66 78.64 31.78 102.92 52.66 65.23 44.30 41.91 64.73 26.02 55.93 43 IG42_AR3 ActiveIntergenicRegion 0 17.04 23.52 15.38 14.41 35.48 37.40 42.01 23.41 28.52 24.26 69.96 40.87 25.34 68.75 39.69 91.61 54.55 47.38 43.16 46.36 50.88 24.97 42.63 44 IG42_AR4 ActiveIntergenicRegion 0 53.47 35.98 36.34 32.84 68.71 59.10 67.00 58.71 50.70 47.70 98.70 54.88 42.94 97.32 80.48 125.38 83.82 64.47 62.68 53.86 58.77 40.53 56.13 45 IG42_SR3 SilentIntergenicRegion 0 13.01 15.27 17.95 14.53 32.34 13.57 31.01 17.22 18.23 9.19 6.51 11.65 13.06 9.37 9.66 11.84 20.25 27.85 26.71 27.58 16.77 10.05 14.60 46 IG42_AR5 ActiveIntergenicRegion 0 15.25 16.13 21.08 23.27 27.97 13.69 29.96 20.56 20.44 18.05 9.90 17.62 14.02 8.41 12.84 14.36 17.69 31.44 24.26 25.86 14.91 12.97 12.49 47 IG42_SR4 SilentIntergenicRegion 0 17.27 19.50 12.49 22.72 24.70 9.97 19.76 10.48 11.68 11.26 4.53 11.15 4.97 5.06 7.83 4.16 10.90 15.61 12.33 20.58 5.63 4.73 7.06 48 IG42_AR7 ActiveIntergenicRegion 0 11.85 36.86 18.95 26.77 34.24 13.10 34.93 21.62 20.92 13.16 3.98 10.26 4.66 5.32 11.14 2.62 9.73 20.23 21.81 21.81 9.67 8.72 7.81 49 IG42_AR8 ActiveIntergenicRegion 0 19.31 39.26 10.94 15.02 22.44 5.62 20.15 16.86 15.63 10.62 3.38 8.57 4.00 1.34 6.07 2.31 5.60 10.99 16.48 20.65 4.83 9.87 3.18