Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C10orf118 Gene 0 34.64 40.76 19.31 26.49 44.38 57.27 40.48 34.55 45.27 18.08 20.53 80.70 82.24 35.80 22.67 34.29 30.26 12.78 6.87 24.56 16.37 35.32 16.42 2 369286 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 369287 Transcript 0 45.45 60.49 21.04 25.55 52.51 73.79 87.12 47.36 60.02 22.14 34.95 124.94 96.22 54.37 23.91 57.43 47.29 14.90 6.94 31.01 21.65 50.66 26.77 4 369285 Transcript 0 3.11 7.38 7.46 9.64 7.43 30.09 10.75 4.01 10.56 8.11 6.49 9.96 14.33 9.16 1.51 15.70 19.04 8.54 2.03 24.92 14.46 9.12 7.34 5 430353 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 428953 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 490661 Transcript 0 2.55 1.46 1.32 2.78 4.89 5.87 6.72 5.20 4.79 3.09 4.66 30.34 18.53 6.79 1.34 9.68 7.34 2.83 2.69 7.74 2.24 12.90 1.94 8 497592 Transcript 0 3.32 2.64 0.40 0.66 5.22 5.76 5.83 3.06 7.19 1.30 2.30 8.02 8.15 4.06 2.39 4.19 3.22 1.60 1.03 2.30 2.98 5.08 0.48 9 ER1a ExonRegion 0 3.34 0.00 0.00 0.00 0.00 9.94 1.60 1.00 0.00 0.00 1.53 0.00 0.00 4.44 0.00 5.79 6.95 2.72 0.00 2.91 2.44 2.08 1.70 10 ER1b ExonRegion 0 10.58 22.70 7.84 8.30 9.19 90.36 25.08 7.76 9.59 6.84 14.23 0.00 14.41 44.65 15.77 72.90 48.85 10.25 11.24 39.03 26.81 19.24 45.01 11 E1_Ac KnownBoundary 0 24.15 44.79 20.64 22.97 3.06 147.13 69.34 22.18 27.78 19.21 27.06 12.30 13.47 23.13 20.40 190.72 99.21 88.21 19.67 69.99 55.17 51.99 127.79 12 ER1c ExonRegion 0 3.62 4.76 9.89 10.36 2.76 23.45 16.33 8.66 18.26 8.79 18.44 6.89 15.53 16.23 4.11 29.18 50.26 10.83 2.75 25.97 36.04 12.45 15.91 13 E1a_E2a KnownJunction 0 0.00 0.00 4.41 7.19 0.00 0.00 3.93 6.86 6.28 9.72 9.69 0.00 6.01 14.83 0.00 4.53 29.83 6.09 4.80 35.22 26.50 2.51 4.18 14 E1a_E3a KnownJunction 0 3.78 0.00 10.82 5.49 3.65 0.00 6.23 13.47 17.16 4.92 48.01 7.65 6.82 25.13 0.00 32.64 74.15 22.22 0.00 17.64 75.99 11.88 8.62 15 ER2a ExonRegion 0 3.69 3.27 11.51 15.70 10.15 18.22 7.21 5.19 12.98 8.20 7.69 11.88 17.18 7.70 4.53 32.08 14.02 15.67 1.30 24.34 9.41 16.20 17.83 16 E2a_E3a KnownJunction 0 5.63 18.88 6.48 6.03 12.14 72.06 21.11 0.00 12.41 6.39 2.11 18.01 19.80 4.94 0.00 10.51 13.28 3.86 0.00 15.21 7.48 8.63 0.00 17 E2a_E4a NovelJunction 0 0.00 0.00 0.00 2.06 0.00 19.99 2.25 0.00 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 I2_AR2 ActiveIntronRegion 0 20.13 3.27 2.93 5.27 7.58 1.58 5.06 4.78 4.99 1.68 1.19 0.44 0.00 0.00 7.69 1.83 0.81 1.81 5.89 1.83 0.54 0.51 2.53 19 ER3a ExonRegion 1 21.46 29.85 29.41 33.67 26.55 40.02 29.76 26.92 42.17 14.13 27.76 115.85 141.22 44.51 12.17 48.33 53.22 17.22 7.49 33.75 20.43 39.87 23.37 20 E3_Da KnownBoundary 0 0.00 5.53 15.79 14.65 4.33 25.16 7.77 17.91 9.84 3.57 5.32 0.00 19.80 0.00 4.94 3.76 0.00 2.53 0.00 15.34 0.00 6.00 0.00 21 E3a_E4a KnownJunction 0 33.04 22.76 27.38 35.06 64.35 71.61 42.84 11.95 33.56 7.74 22.11 152.75 203.40 67.63 17.80 42.21 36.75 4.39 0.00 36.24 5.81 51.74 10.24 22 ER3b ExonRegion 0 8.60 2.98 12.57 8.27 8.41 10.01 7.16 7.54 7.19 2.91 3.35 8.60 4.35 0.83 4.57 1.14 0.82 2.08 1.11 5.06 0.55 2.40 2.18 23 ER4a ExonRegion 1 65.15 22.40 21.44 50.64 38.39 44.83 37.97 22.63 42.65 8.90 28.16 168.07 266.33 48.66 17.45 41.94 40.21 17.49 6.97 36.12 9.44 37.44 16.00 24 E4a_E5a KnownJunction 0 33.93 27.63 20.67 48.78 11.12 34.01 32.50 26.41 55.21 16.90 36.38 129.94 256.48 45.03 9.89 23.33 38.34 24.00 4.80 41.55 20.02 39.56 27.49 25 ER5a ExonRegion 1 45.40 37.88 18.60 44.47 33.31 43.29 32.14 25.86 51.14 14.37 35.09 178.05 278.20 57.17 11.18 48.50 47.62 18.41 2.77 33.02 25.74 36.55 24.56 26 E5a_E6a KnownJunction 1 155.51 67.69 24.54 61.90 52.63 89.61 68.72 35.98 53.04 13.46 36.59 254.78 387.96 52.74 17.68 50.33 49.65 21.56 14.40 36.69 26.07 33.00 21.34 27 ER6a ExonRegion 1 37.46 25.97 30.51 49.90 42.82 37.74 45.89 28.09 52.91 18.91 31.34 176.80 219.93 63.12 14.60 55.93 62.39 16.88 11.71 38.21 34.29 42.33 28.18 28 E6a_E7a KnownJunction 1 43.27 56.70 34.45 56.67 18.59 29.30 53.39 21.60 50.66 16.82 35.11 196.56 184.73 71.63 13.60 48.53 101.45 12.15 3.86 32.66 31.63 26.88 19.38 29 E7_Ab NovelBoundary 1 16.08 25.52 19.34 29.23 9.76 30.32 43.63 19.76 31.63 6.90 15.48 37.21 118.34 33.43 0.00 29.05 23.09 1.91 0.00 18.22 15.75 22.72 13.91 30 ER7a ExonRegion 1 28.78 46.09 30.23 46.61 20.34 37.90 48.63 22.01 49.40 11.55 27.32 145.18 180.10 64.75 8.12 52.90 84.50 8.50 0.00 32.91 29.68 25.28 21.93 31 ER7b ExonRegion 1 71.38 54.81 25.35 45.46 43.81 36.76 60.52 19.72 49.64 14.82 29.18 181.71 177.60 57.68 12.38 45.97 71.52 7.50 7.34 30.70 23.70 43.40 25.39 32 E7a_E8a KnownJunction 1 44.60 39.20 33.00 85.70 75.98 14.82 83.03 23.04 49.22 16.63 14.58 193.26 149.67 52.50 8.90 63.91 67.98 8.33 8.94 39.12 11.24 57.38 24.07 33 ER8a ExonRegion 0 43.08 29.67 31.67 49.99 47.83 24.47 50.74 23.90 51.82 19.95 30.63 158.95 189.83 62.49 21.64 57.72 65.86 11.70 1.94 34.77 14.02 42.07 25.67 34 E8a_E9a KnownJunction 1 30.75 38.35 30.37 48.21 18.34 37.31 31.31 23.17 44.68 13.70 22.85 176.46 101.78 60.80 8.90 11.71 48.43 9.04 0.00 29.34 8.77 49.97 14.43 35 ER9a ExonRegion 0 10.30 24.34 22.11 41.12 27.30 37.45 45.32 20.67 40.48 16.00 29.33 199.94 171.40 41.00 13.98 41.70 67.35 10.23 0.55 39.61 12.31 29.25 11.00 36 E9a_E10a KnownJunction 0 14.89 33.94 28.74 42.55 17.57 52.47 67.79 20.74 41.93 17.78 31.06 135.94 177.59 44.50 14.46 41.61 70.78 7.71 4.52 14.64 5.93 31.66 15.79 37 ER10a ExonRegion 1 14.06 28.12 22.61 31.00 34.23 25.25 43.75 18.18 42.05 11.79 20.06 153.37 146.58 47.53 14.44 30.75 49.02 10.19 3.26 29.08 7.95 28.83 14.75 38 E10a_E11a KnownJunction 0 16.08 26.51 17.09 31.80 20.12 24.19 31.53 28.01 38.54 21.49 23.01 139.25 108.11 47.97 10.75 22.73 42.45 9.04 0.00 35.28 13.96 25.47 4.18 39 I10 Intron 0 1.02 2.12 1.61 5.21 6.65 4.12 5.84 1.45 2.07 1.64 3.25 22.79 8.50 5.43 1.55 6.67 4.76 1.18 0.26 4.44 2.12 3.68 1.41 40 I10_SR1 SilentIntronRegion 0 1.02 2.13 1.62 5.23 6.67 4.13 5.86 1.45 2.07 1.65 3.27 22.86 8.52 5.45 1.55 6.69 4.78 1.19 0.26 4.45 2.12 3.69 1.42 41 ER11a ExonRegion 0 18.69 24.99 11.47 28.43 17.29 50.88 42.55 26.60 38.88 15.01 28.67 143.84 159.30 36.72 11.40 45.95 42.22 8.92 6.84 30.03 20.31 27.39 13.04 42 E11a_E12a KnownJunction 0 6.22 34.80 18.69 23.74 17.06 36.51 38.29 30.93 46.99 24.34 29.74 197.76 169.79 57.86 23.12 26.15 44.69 10.28 11.67 26.14 32.12 17.94 23.05 43 ER12a ExonRegion 1 12.79 19.58 14.70 23.69 23.61 51.06 45.58 49.90 49.99 18.59 48.66 160.10 149.46 61.50 14.92 48.83 69.39 14.50 9.14 31.35 28.70 41.17 28.08 44 E12_Ab KnownBoundary 0 10.67 32.82 16.71 44.82 50.93 72.97 56.88 42.31 51.71 21.62 67.86 113.89 129.21 43.97 8.90 62.55 72.93 24.62 12.80 45.38 21.81 57.56 43.79 45 ER12b ExonRegion 0 11.63 17.44 13.07 26.47 27.73 57.86 39.32 28.11 47.83 19.82 49.55 164.86 155.25 46.22 13.19 49.75 57.18 18.56 9.00 27.87 30.52 37.12 25.65 46 E12a_E13a KnownJunction 0 30.08 18.02 12.89 23.17 26.91 44.24 36.70 20.87 55.70 21.87 37.11 214.12 147.07 53.15 13.35 47.25 46.56 22.80 13.46 25.31 16.74 32.27 20.74 47 E13_Aa NovelBoundary 0 3.63 3.35 1.45 0.00 0.00 0.00 2.25 0.00 0.00 0.00 7.42 0.00 6.82 0.00 0.00 3.25 7.11 0.00 4.80 3.26 0.00 0.00 0.00 48 ER13a ExonRegion 0 24.30 29.95 9.35 27.96 27.55 58.83 46.67 17.69 46.65 23.27 36.46 150.19 117.52 55.07 15.71 57.97 59.56 16.14 12.29 46.30 41.00 35.55 24.47 49 E13_Da KnownBoundary 0 6.08 6.12 4.35 1.66 12.99 2.90 14.75 5.79 6.86 9.00 2.00 17.56 12.66 4.94 6.30 4.36 17.30 2.07 0.00 5.82 11.31 20.33 4.35 50 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E13a_E15a KnownJunction 1 10.52 25.46 4.79 17.35 15.62 87.45 55.91 13.10 36.46 18.56 36.69 80.13 126.94 75.52 14.96 41.61 34.78 10.74 3.67 47.55 51.28 16.53 34.74 52 ER13b ExonRegion 0 2.55 1.46 1.32 2.78 4.89 5.87 6.72 5.20 4.79 3.09 4.66 30.34 18.53 6.79 1.34 9.68 7.34 2.83 2.69 7.74 2.24 12.90 1.94 53 E13_Db NovelBoundary 0 3.78 2.57 1.15 3.83 19.78 10.73 14.75 9.20 5.50 0.00 7.90 26.11 0.00 2.47 4.45 4.36 8.88 0.00 4.80 6.01 0.00 22.35 0.00 54 E14_Aa NovelBoundary 0 0.00 0.00 0.00 3.36 0.00 15.05 4.46 10.84 4.34 0.00 2.63 27.16 0.00 10.24 0.00 8.72 8.32 0.00 3.48 2.56 8.03 2.57 4.18 55 ER14a ExonRegion 0 6.65 5.28 0.79 1.32 10.43 11.52 9.71 6.12 13.16 2.59 4.60 16.04 16.29 8.11 4.79 8.37 6.43 3.19 2.07 4.61 5.97 10.15 0.95 56 E14_Da NovelBoundary 0 7.56 14.87 0.00 8.99 25.55 7.89 16.87 4.81 16.55 5.72 10.00 0.00 6.01 4.71 10.75 12.05 9.35 1.70 0.00 8.76 2.59 11.45 0.00 57 I14 Intron 0 10.46 6.40 1.23 1.37 10.82 6.18 11.60 2.89 9.10 5.76 2.17 20.31 16.36 5.90 3.60 10.02 5.19 1.86 0.72 9.08 5.44 11.70 0.66 58 I14_AR1 ActiveIntronRegion 0 10.54 6.45 1.24 1.38 10.92 6.23 11.70 2.92 9.17 5.81 2.19 20.49 16.49 5.96 3.64 10.11 5.24 1.88 0.72 9.15 5.48 11.81 0.67 59 E15_Aa NovelBoundary 0 3.78 12.04 8.10 6.99 35.82 10.62 25.97 5.67 12.27 3.12 7.79 7.65 32.47 16.95 5.19 3.93 4.68 4.44 0.00 9.08 2.47 8.76 4.35 60 ER15a ExonRegion 1 8.65 17.62 9.61 16.62 37.89 76.86 45.95 25.05 45.20 16.28 40.21 106.05 117.37 73.07 17.84 56.87 49.76 14.87 11.21 43.66 45.79 33.08 34.99 61 E15a_E16a KnownJunction 1 11.04 32.89 16.08 25.57 35.06 45.66 34.71 27.48 56.80 22.40 57.96 88.83 131.32 80.76 5.19 62.38 58.16 21.64 17.22 53.82 69.38 23.39 32.69 62 ER16a ExonRegion 1 28.02 33.26 14.96 24.93 33.17 60.78 50.53 36.87 51.87 17.62 43.04 94.04 120.14 74.52 16.16 70.26 56.02 18.54 8.23 42.16 32.87 41.06 35.20 63 E16a_E17a KnownJunction 0 91.94 100.51 19.75 26.37 76.91 92.28 166.98 44.28 59.32 13.19 47.22 118.24 112.33 81.29 26.58 75.45 61.71 14.55 0.00 39.88 16.43 58.23 32.78 64 E16a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER17a ExonRegion 0 26.29 39.45 19.89 29.10 51.75 67.10 65.06 43.05 61.26 23.51 42.55 126.72 107.08 49.18 17.92 53.55 53.86 15.72 6.21 26.50 21.33 44.70 31.10 66 E17a_E18a KnownJunction 0 10.15 37.23 21.38 16.05 12.22 51.56 63.73 49.95 59.11 26.19 31.90 184.56 100.16 48.56 13.72 66.39 50.40 14.22 13.08 32.79 33.24 53.58 26.80 67 ER18a ExonRegion 0 21.24 52.87 19.69 30.02 48.38 72.64 73.94 39.93 51.93 19.89 37.09 123.87 89.14 43.48 14.09 55.40 48.21 14.80 15.72 34.64 30.03 53.39 24.57 68 E18_Da KnownBoundary 0 23.34 64.79 10.88 12.75 39.13 66.44 36.43 23.91 43.95 25.17 27.38 80.73 99.67 47.56 22.25 57.16 25.99 20.93 8.66 40.65 35.03 37.47 17.16 69 ER18b ExonRegion 0 18.70 51.85 14.31 21.77 40.86 56.19 48.58 27.61 56.48 20.87 29.70 124.36 87.02 45.98 13.25 36.23 38.86 12.33 9.98 31.18 15.33 40.54 12.36 70 E18_Db KnownBoundary 1 22.89 24.40 11.77 20.54 32.09 101.42 80.95 28.71 42.19 19.21 12.37 136.39 39.93 40.26 17.80 13.93 31.98 8.46 4.71 33.17 6.18 25.17 12.63 71 ER18c ExonRegion 0 53.40 64.79 23.14 30.69 69.16 84.22 52.71 52.18 60.38 25.66 18.12 70.23 65.31 38.45 37.43 34.34 23.20 15.11 8.48 24.85 15.61 46.12 16.39