Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CASP7 Gene 0 68.72 4.14 19.92 9.82 30.20 16.68 20.48 20.03 11.68 10.22 57.19 88.64 105.36 84.43 129.31 73.66 53.16 2.36 1.93 2.99 74.47 150.31 86.31 2 429617 Transcript 0 3.66 0.00 0.00 0.00 0.00 13.50 4.39 0.16 0.00 0.68 5.01 0.00 0.00 8.12 4.75 4.19 2.40 0.08 0.00 0.00 22.74 6.06 7.74 3 369331 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 369321 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 345633 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 6 369318 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 369319 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 393012 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 442393 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 369316 Transcript 0 1.08 0.00 0.00 0.00 0.00 0.00 0.13 0.68 0.70 0.00 0.60 5.11 5.09 4.65 4.41 0.95 2.14 0.00 0.00 0.00 2.72 4.88 3.03 11 369315 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 298700 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 452490 Transcript 0 0.45 0.00 0.12 0.80 0.15 0.13 0.04 0.32 0.25 0.10 1.30 0.93 0.13 0.88 2.69 2.12 1.60 0.03 0.00 0.00 2.30 2.23 3.15 14 468790 Transcript 0 0.99 0.00 0.00 0.12 0.32 0.00 0.39 0.00 0.22 0.40 0.45 0.00 0.00 0.47 1.49 0.17 0.58 0.00 0.00 0.00 2.98 1.71 1.73 15 487232 Transcript 0 2.84 0.06 0.56 0.12 2.98 0.16 0.34 1.83 1.76 0.39 4.53 0.49 1.88 3.67 4.48 2.97 5.09 0.11 0.00 0.00 8.56 4.23 7.55 16 ER1a ExonRegion 0 3.66 0.00 0.00 0.00 0.00 13.50 4.39 0.16 0.00 0.68 5.01 0.00 0.00 8.12 4.75 4.19 2.40 0.08 0.00 0.00 22.74 6.06 7.74 17 ER1b ExonRegion 0 8.38 0.72 2.05 0.00 1.88 13.43 8.85 2.00 0.28 1.50 8.57 0.00 0.00 5.52 9.74 11.58 3.51 0.96 0.00 0.00 25.46 23.02 29.53 18 E1a_E4b KnownJunction 0 3.48 0.00 3.46 0.00 0.00 0.00 2.25 4.89 1.79 2.47 22.95 0.00 0.00 9.77 13.35 4.02 4.49 0.00 0.00 0.00 48.87 37.47 44.39 19 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER2b ExonRegion 0 0.00 0.00 0.55 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.04 0.71 0.01 21 E2_Ac KnownBoundary 0 0.00 0.00 3.61 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 22 E2_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 8.37 23 ER2c ExonRegion 0 3.62 0.00 2.45 0.00 4.68 2.52 0.00 0.14 0.00 0.00 0.32 0.00 0.00 0.54 2.42 1.11 0.14 0.00 0.00 0.00 7.44 10.59 10.16 24 E2_Ae KnownBoundary 0 13.41 0.00 0.00 0.00 4.24 2.84 0.00 0.00 0.00 0.00 2.21 0.00 0.00 4.94 8.90 14.70 0.00 0.00 0.00 0.00 14.70 17.21 32.44 25 ER2d ExonRegion 0 15.01 0.00 1.11 0.62 7.05 5.67 0.96 4.87 0.67 0.31 13.53 0.00 0.00 13.58 21.10 31.34 11.10 0.00 0.00 0.00 36.86 35.23 47.25 26 E2_Af KnownBoundary 1 83.27 0.00 4.20 7.76 29.29 19.31 6.76 20.25 10.85 4.08 88.81 0.00 0.00 112.90 165.89 299.15 99.02 1.78 0.00 0.00 187.19 120.32 351.61 27 ER2e ExonRegion 1 43.01 0.00 2.41 3.89 18.92 15.00 4.02 13.33 6.57 2.42 55.23 0.00 0.00 65.95 97.92 167.08 63.19 0.92 0.00 0.00 119.87 82.52 205.98 28 ER2f ExonRegion 1 59.04 0.00 4.90 4.09 18.45 15.64 3.45 20.60 13.59 3.44 95.32 0.00 0.49 86.46 145.37 270.23 135.77 3.70 0.00 0.00 190.62 164.49 330.76 29 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 7.09 0.00 2.20 0.00 0.00 2.35 8.70 0.00 30 E2a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 31 E2a_E4b KnownJunction 1 39.04 0.00 6.27 2.86 10.27 8.92 1.90 19.43 14.73 3.89 47.59 0.00 0.00 18.36 79.49 120.14 109.86 5.14 0.00 0.00 102.86 120.63 155.87 32 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.59 0.00 0.00 1.73 0.00 0.00 2.79 0.00 0.00 0.00 0.32 7.60 0.00 1.85 0.00 0.00 3.67 6.71 2.61 33 E3_Ac KnownBoundary 0 0.00 0.00 1.57 2.06 4.33 0.00 0.00 2.55 0.00 0.00 2.26 0.00 6.82 0.00 5.19 4.36 0.00 2.20 0.00 2.94 3.15 0.00 0.00 34 ER3b ExonRegion 0 0.00 0.00 0.00 0.00 2.68 0.00 0.00 1.73 0.00 0.00 1.01 0.00 3.94 0.00 1.39 3.57 0.00 1.18 0.00 0.00 2.20 2.25 0.12 35 ER3c ExonRegion 0 0.00 0.00 1.11 0.00 0.88 0.00 0.00 0.99 2.30 0.00 8.76 0.00 4.63 2.34 10.61 6.15 5.11 0.00 0.00 0.00 5.83 6.25 5.99 36 E3a_E4b KnownJunction 0 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 1.13 0.00 20.79 0.00 5.84 14.30 26.08 4.36 8.79 0.00 0.00 0.00 10.50 6.06 15.62 37 ER4a ExonRegion 0 0.45 0.00 0.12 0.80 0.15 0.13 0.04 0.32 0.25 0.10 1.30 0.93 0.13 0.88 2.69 2.12 1.60 0.03 0.00 0.00 2.30 2.23 3.15 38 E4_Ab KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER4b ExonRegion 0 8.85 0.54 11.06 1.18 6.90 4.14 5.76 14.45 12.88 7.46 63.11 18.51 23.02 53.82 46.45 62.85 69.83 5.20 1.49 0.00 136.31 84.79 84.87 40 E4a_E6b KnownJunction 1 17.48 3.35 23.00 1.73 17.23 0.00 15.15 28.14 26.45 15.10 116.35 12.45 70.29 93.77 57.23 70.07 221.22 2.57 0.00 0.00 256.19 130.00 127.02 41 ER5a ExonRegion 0 1.99 0.00 0.00 0.24 0.64 0.00 0.78 0.00 0.43 0.80 0.91 0.00 0.00 0.94 2.99 0.35 1.16 0.00 0.00 0.00 5.96 3.43 3.45 42 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER6a ExonRegion 0 2.84 0.06 0.56 0.12 2.98 0.16 0.34 1.83 1.76 0.39 4.53 0.49 1.88 3.67 4.48 2.97 5.09 0.11 0.00 0.00 8.56 4.23 7.55 44 E6_Ab KnownBoundary 0 13.04 0.00 0.00 0.00 4.16 0.00 0.00 3.37 3.50 1.67 2.68 0.00 0.00 2.41 10.75 3.50 0.00 0.00 0.00 0.00 8.65 2.57 7.00 45 ER6b ExonRegion 0 20.65 0.78 26.79 6.53 24.48 28.84 18.32 28.15 25.65 18.49 91.27 108.75 126.60 153.50 166.99 219.13 109.46 6.33 1.19 0.00 164.32 238.79 278.83 46 E6a_E7a KnownJunction 0 40.53 3.35 27.62 9.32 37.27 57.69 27.12 43.66 23.18 19.58 131.40 87.63 191.87 134.68 86.53 114.93 104.72 5.60 0.00 0.00 169.52 263.55 135.98 47 ER7a ExonRegion 0 31.34 1.13 27.47 11.21 26.83 30.41 16.22 32.02 16.85 17.59 112.27 108.84 153.73 141.70 82.61 116.33 136.90 5.08 0.00 0.00 172.93 205.34 109.23 48 E7_Da KnownBoundary 0 40.30 2.96 31.73 11.35 31.58 7.33 9.76 23.08 12.53 16.01 92.18 143.75 173.85 151.69 109.40 122.36 163.35 6.59 0.00 0.00 197.32 185.78 107.81 49 ER7b ExonRegion 0 42.44 0.00 30.25 11.19 15.54 7.72 14.73 18.53 21.13 17.34 93.63 162.47 136.01 154.75 111.77 109.60 97.46 3.60 0.00 0.00 151.09 202.65 110.05 50 E7_Db KnownBoundary 0 27.56 0.00 16.85 4.46 7.39 4.54 6.76 5.09 15.13 12.84 47.33 85.83 36.69 69.34 60.08 30.50 24.96 2.57 0.00 0.00 61.41 105.02 86.22 51 E7b_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E7_Dc NovelBoundary 0 27.34 0.00 14.84 5.13 7.30 2.10 17.80 22.26 24.57 7.84 57.54 98.43 86.03 102.54 46.48 70.67 78.07 0.00 0.00 0.00 73.45 114.87 65.64 53 E7c_E9c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER7c ExonRegion 0 53.62 0.00 31.86 9.54 14.27 6.72 22.07 25.93 30.88 17.20 112.75 204.21 153.21 217.63 110.73 116.41 101.23 1.85 0.00 0.00 152.42 214.26 135.09 55 E7d_E8a KnownJunction 0 140.25 9.60 25.04 14.42 26.99 13.40 16.61 37.38 27.86 16.06 159.30 277.14 386.66 176.47 237.10 216.87 171.95 5.10 4.52 0.00 249.21 248.18 211.62 56 ER7d ExonRegion 0 77.18 4.54 26.55 8.95 18.20 8.80 17.92 27.94 31.37 15.60 143.03 232.06 280.62 206.75 146.32 157.82 130.06 4.80 1.81 0.00 198.70 233.56 161.52 57 ER8a ExonRegion 0 61.60 4.67 26.36 12.38 18.10 26.14 15.49 30.85 18.13 13.42 113.75 225.87 214.64 182.28 136.17 145.57 117.43 9.71 2.30 2.08 190.50 246.83 159.77 58 E8_Da KnownBoundary 0 36.08 0.00 24.10 12.32 20.80 26.35 8.21 22.96 8.48 8.84 68.18 179.31 126.45 136.32 146.73 83.23 71.06 11.32 0.00 0.00 119.60 167.47 100.47 59 E8a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 E8_Db KnownBoundary 0 40.60 6.58 20.16 12.42 20.03 22.88 17.93 24.77 7.90 12.71 86.39 120.94 151.94 193.60 143.52 116.38 67.70 0.00 0.00 0.00 90.50 230.54 135.64 61 E8b_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 ER8b ExonRegion 0 35.98 4.07 26.67 16.29 24.21 25.59 15.32 33.17 10.88 14.09 93.70 175.65 148.52 184.30 131.39 124.97 80.79 9.24 0.00 0.51 122.36 235.44 137.18 63 ER8c ExonRegion 0 51.47 1.87 24.15 10.73 23.39 23.71 14.32 25.34 14.57 14.70 119.34 177.11 173.05 175.42 126.34 136.69 102.26 3.47 0.03 0.00 151.47 215.05 148.07 64 E8_Dc NovelBoundary 1 9.56 0.00 2.96 0.00 4.16 0.00 1.81 2.18 2.66 1.56 4.21 63.92 19.80 7.00 6.18 7.43 7.39 0.00 0.00 3.26 5.44 30.00 0.00 65 E8c_E10a KnownJunction 0 64.31 0.00 26.05 11.12 10.61 32.99 15.28 30.72 17.68 19.53 89.13 124.99 47.24 149.33 144.51 117.41 51.15 2.16 4.05 0.00 130.04 134.22 117.20 66 ER8d ExonRegion 0 52.91 0.00 24.17 8.18 11.19 27.67 13.60 23.57 14.93 14.81 98.58 144.45 78.45 162.71 128.97 115.91 51.91 0.50 3.19 0.00 127.21 149.07 136.15 67 E9_Ab NovelBoundary 1 37.04 43.02 99.61 80.31 17.23 19.93 46.55 92.50 100.78 45.42 10.58 7.65 0.00 3.00 0.00 64.17 9.44 113.62 19.20 32.15 12.42 12.49 8.54 68 E9_Ac NovelBoundary 0 69.42 126.89 72.88 87.00 107.64 78.02 142.29 72.17 66.49 56.84 36.96 25.81 27.27 18.13 54.64 99.63 46.19 112.26 144.47 79.96 60.36 59.64 127.11 69 ER9a ExonRegion 1 3.08 0.00 0.00 0.00 2.68 0.00 3.97 0.00 0.00 1.15 0.00 23.22 0.00 10.19 14.77 2.16 0.00 0.00 3.19 0.00 2.40 14.21 5.34 70 ER9b ExonRegion 1 7.76 0.00 0.00 0.00 2.68 0.00 4.41 0.00 0.00 1.15 0.00 34.64 0.00 16.51 22.24 6.93 0.00 0.00 3.19 0.00 3.31 27.78 5.87 71 ER9c ExonRegion 1 7.61 1.53 5.46 5.05 2.44 1.19 5.69 7.22 6.41 11.53 6.71 30.76 7.41 11.85 19.49 11.00 3.13 1.30 2.07 1.01 6.38 40.28 17.05 72 E9_Da KnownBoundary 0 129.43 150.50 36.13 39.49 81.49 34.24 166.85 45.59 34.32 29.04 27.48 24.01 62.50 21.37 33.01 141.33 121.83 108.19 107.01 90.31 76.17 86.09 108.50 73 E9a_E10a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 12.66 5.18 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 74 ER9d ExonRegion 0 27.11 25.29 7.79 6.49 28.77 22.44 33.65 8.82 9.93 9.83 10.85 27.92 31.67 22.23 45.01 21.06 13.47 7.31 19.41 38.75 22.42 24.21 32.97 75 E9_Db KnownBoundary 0 10.45 0.00 0.00 1.63 0.00 0.00 1.77 2.55 3.24 0.00 2.68 30.46 13.64 19.72 27.20 4.36 4.39 0.00 0.00 0.00 11.43 27.98 14.60 76 ER9e ExonRegion 0 2.16 0.00 0.00 0.00 0.00 0.00 0.25 1.36 1.39 0.00 1.19 10.22 10.18 9.30 8.83 1.90 4.28 0.00 0.00 0.00 5.44 9.75 6.06 77 ER10a ExonRegion 0 50.01 1.77 27.16 10.04 24.69 18.77 19.86 27.08 12.68 12.31 94.64 153.45 101.96 171.58 154.22 130.70 87.06 2.68 3.91 0.00 165.16 182.82 162.61 78 E10_Da NovelBoundary 0 39.04 0.00 13.54 1.23 7.56 4.32 27.25 18.36 13.05 4.78 66.91 120.79 81.49 106.83 100.62 91.51 79.48 1.95 0.00 0.00 99.83 135.63 96.97 79 E10b_E11a KnownJunction 0 57.94 0.00 19.34 3.63 19.78 6.87 25.00 26.70 14.35 9.37 99.03 180.51 83.11 151.98 103.22 115.95 120.43 2.07 0.00 0.00 169.21 182.84 153.48 80 ER10b ExonRegion 0 49.24 0.00 17.40 3.63 17.30 5.50 27.27 22.93 14.66 9.63 103.99 186.17 88.80 159.06 136.94 137.31 123.89 1.85 0.00 0.00 170.13 178.77 146.24 81 ER11a ExonRegion 0 58.34 2.15 18.95 8.68 31.67 33.20 21.66 24.63 19.49 12.77 101.08 109.69 72.42 166.50 165.76 121.81 125.28 3.16 0.84 0.00 172.93 203.68 160.89 82 E11_Da KnownBoundary 0 112.91 0.00 15.91 11.95 56.54 51.85 13.60 24.56 26.42 12.87 107.92 129.94 98.05 153.34 205.82 142.70 117.16 5.14 0.00 0.00 156.17 303.29 190.10 83 ER11b ExonRegion 0 150.05 5.36 37.37 19.64 60.79 24.77 37.05 35.53 17.23 16.17 85.52 152.15 206.82 122.88 248.16 98.22 69.47 1.91 0.70 0.78 82.17 267.22 106.89 84 ER11c ExonRegion 0 4.54 0.00 2.10 0.00 2.68 1.05 0.38 1.23 0.88 0.98 3.87 8.66 9.38 1.39 6.22 2.97 0.00 0.00 0.00 0.00 0.00 12.50 5.87