Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MARVELD1 Gene 0 55.98 77.34 125.16 35.24 38.41 88.58 54.48 49.10 42.12 62.02 6.31 2.35 13.51 12.04 3.18 0.16 2.42 134.63 123.09 89.20 422.29 240.13 243.03 2 451097 Transcript 0 0.01 0.05 0.03 0.31 0.00 0.57 0.02 0.00 0.00 0.02 0.00 0.00 0.58 0.00 0.00 0.00 0.50 0.41 0.53 0.96 0.79 0.07 0.02 3 434038 Transcript 0 2.53 0.00 0.00 0.55 0.00 0.89 0.00 1.38 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 3.14 0.00 1.04 0.00 2.90 4 285605 Transcript 0 39.04 63.60 114.17 30.41 26.33 72.51 40.20 43.25 39.45 59.39 6.12 2.50 12.72 12.98 3.39 0.00 2.57 144.81 128.73 92.37 467.54 206.12 233.90 5 421644 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.07 0.00 4.35 6 449755 Transcript 0 1.86 0.00 2.15 0.27 3.75 0.24 0.87 0.34 0.12 0.22 0.00 0.00 0.00 0.07 0.27 0.00 0.00 0.48 0.42 0.28 4.32 2.32 10.56 7 ER1a ExonRegion 0 0.02 0.14 0.09 0.92 0.00 1.70 0.05 0.00 0.00 0.07 0.00 0.00 1.74 0.00 0.00 0.00 1.49 1.24 1.58 2.88 2.36 0.22 0.05 8 E1a_E3d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 0 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.16 0.00 0.00 10 E2a_E3d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER3a ExonRegion 0 2.86 8.03 37.53 5.32 4.04 17.57 9.44 14.53 14.36 27.12 2.14 1.50 6.40 7.48 1.39 0.00 1.15 64.53 49.54 46.37 252.80 92.99 100.21 12 E3_Ab KnownBoundary 0 7.26 32.63 44.11 6.79 7.39 43.61 13.12 20.17 31.34 42.87 0.00 0.00 13.15 7.24 8.90 0.00 4.68 130.21 62.59 45.64 367.70 101.95 151.18 13 ER3b ExonRegion 0 14.82 39.47 78.09 15.06 19.91 65.02 29.13 34.58 37.18 59.60 4.74 0.00 8.43 16.81 4.73 0.00 0.16 179.89 120.48 87.15 491.53 209.65 241.05 14 E3_Da KnownBoundary 0 34.82 46.90 114.40 37.82 32.09 50.71 46.99 74.51 63.83 91.55 12.32 0.00 0.00 9.77 9.89 0.00 0.00 208.84 202.64 147.84 902.20 285.35 289.47 15 E3a_E3f KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.07 0.00 4.35 16 ER3c ExonRegion 0 45.21 106.60 137.66 34.03 35.41 119.03 66.87 57.60 58.20 90.09 9.42 2.74 11.82 19.77 4.43 0.00 4.83 282.09 241.53 132.94 795.74 317.25 418.36 17 E3_Ac KnownBoundary 0 38.38 124.32 120.22 37.29 61.29 152.47 100.12 48.59 36.81 66.64 7.48 0.00 13.64 16.54 4.45 0.00 4.68 170.54 209.61 108.34 546.11 221.11 288.02 18 ER3d ExonRegion 0 51.33 129.25 126.04 28.17 65.45 194.88 113.71 50.02 55.85 68.56 6.17 2.96 37.07 17.48 1.38 0.00 6.81 177.44 185.26 128.67 639.18 280.35 345.41 19 E3_Ad KnownBoundary 0 48.30 113.99 150.94 32.60 75.38 167.18 101.97 63.66 82.67 82.31 0.00 0.00 27.60 19.25 4.45 0.00 0.00 151.10 143.91 136.91 534.68 265.26 299.80 20 ER3e ExonRegion 0 47.52 71.32 136.66 47.34 53.10 113.28 74.69 59.71 73.43 74.41 8.63 5.51 19.26 17.17 1.90 0.00 3.65 200.35 206.82 139.56 681.26 383.47 367.78 21 E3_Db KnownBoundary 0 70.23 118.20 185.42 80.38 66.55 118.40 118.75 57.75 55.67 59.55 11.90 6.30 0.00 19.42 0.00 0.00 4.02 220.03 273.33 148.35 702.84 390.49 506.54 22 E3b_E3e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E3b_E3f KnownJunction 0 7.48 0.00 0.00 1.66 0.00 2.67 0.00 4.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.41 0.00 2.97 0.00 8.71 24 ER3f ExonRegion 0 75.11 132.35 171.56 57.90 72.12 162.46 117.48 67.92 67.75 98.75 10.89 1.38 22.47 19.80 4.57 0.00 4.28 198.57 216.12 128.72 675.74 403.59 420.29 25 E3_Ae KnownBoundary 0 125.87 117.74 187.52 50.54 41.43 163.37 122.95 52.90 60.50 87.17 10.16 0.00 13.64 17.13 11.62 0.00 0.00 170.75 199.25 119.91 573.91 357.91 379.44 26 ER3g ExonRegion 0 125.17 143.00 188.30 56.38 90.61 186.26 122.40 79.09 61.94 105.73 10.30 6.51 6.48 24.18 3.65 1.16 2.57 228.27 198.90 120.94 692.44 385.01 443.68 27 E3_Af KnownBoundary 0 261.38 223.64 267.55 59.90 165.03 256.44 199.39 102.73 74.85 100.38 12.42 6.30 13.64 19.42 4.45 0.00 0.00 282.26 209.32 130.14 759.43 399.61 481.70 28 ER3h ExonRegion 0 179.35 166.87 193.45 44.06 53.24 133.79 118.26 86.55 67.15 103.60 7.92 2.32 6.27 19.44 2.46 0.00 2.09 246.28 174.38 115.47 659.65 358.18 335.04 29 E3c_E4a KnownJunction 0 256.93 233.45 229.92 65.96 56.79 102.55 89.08 90.40 66.32 102.72 12.69 0.00 0.00 19.19 4.45 0.00 4.39 211.58 160.38 113.01 653.73 303.35 312.17 30 I3 Intron 0 3.41 15.77 8.65 5.32 3.51 21.26 4.40 1.82 2.41 3.45 0.19 0.37 0.86 0.27 0.21 0.00 0.00 3.24 1.93 3.00 5.77 8.61 11.84 31 I3_SR1 SilentIntronRegion 0 2.38 13.43 10.76 7.13 4.89 27.05 5.21 2.53 3.10 4.56 0.27 0.00 0.54 0.38 0.29 0.00 0.00 4.52 2.69 3.89 5.86 10.81 14.37 32 I3_AR1 ActiveIntronRegion 0 6.29 22.65 3.40 0.76 0.00 6.83 2.46 0.00 0.69 0.64 0.00 1.36 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.78 5.74 3.10 5.47 33 E4_Aa NovelBoundary 0 13.71 35.78 29.45 4.83 0.00 21.18 8.35 4.27 11.17 7.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 7.67 22.55 11.88 16.05 34 ER4a ExonRegion 0 167.98 219.89 243.12 61.96 79.12 183.68 128.10 90.96 63.14 100.54 9.54 2.01 8.93 13.94 0.94 0.98 4.11 217.19 151.60 135.65 645.05 378.89 327.12 35 E4_Da KnownBoundary 0 369.92 183.78 283.05 96.42 108.66 252.07 122.11 121.33 89.84 155.88 14.58 0.00 26.46 21.01 0.00 0.00 4.11 245.07 272.48 160.30 565.63 686.86 410.17 36 ER4b ExonRegion 0 246.44 261.00 372.59 121.99 129.77 239.35 144.58 145.56 113.18 150.10 20.09 5.40 32.72 18.24 5.65 1.17 8.30 245.82 312.56 183.52 675.34 761.24 594.58 37 E4_Db KnownBoundary 0 88.90 226.01 388.66 98.52 126.06 291.59 195.16 149.88 134.58 157.12 17.27 5.55 26.30 16.89 5.07 0.00 4.11 194.50 201.79 137.81 593.87 378.97 376.45 38 ER4c ExonRegion 0 176.62 261.62 427.23 140.94 142.44 300.36 163.52 173.03 122.70 164.32 19.73 7.35 62.83 16.61 11.74 1.02 7.07 305.25 378.16 232.91 679.07 809.33 757.04 39 E4_Dc KnownBoundary 0 88.31 86.70 431.59 150.10 74.19 105.00 74.19 153.08 116.06 149.89 7.21 12.60 46.91 17.31 9.64 0.00 0.00 293.95 196.90 196.29 537.09 378.61 495.53 40 ER4d ExonRegion 0 100.40 134.84 362.59 100.24 93.37 162.32 82.07 132.07 101.12 140.17 13.44 13.09 29.08 15.21 8.91 0.00 6.99 239.08 175.79 213.84 850.89 329.22 354.26 41 E4_Dd KnownBoundary 0 211.96 256.47 346.62 98.06 116.38 241.45 120.48 123.26 84.11 86.25 12.58 0.00 26.78 9.83 14.59 0.00 14.21 223.35 207.25 219.81 862.41 434.94 435.27 42 E4d_E5a KnownJunction 0 2.89 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER4e ExonRegion 0 69.04 76.18 167.33 51.88 39.54 80.94 44.28 57.63 45.80 60.97 6.80 3.26 19.93 11.71 4.35 0.00 1.72 87.80 95.12 97.80 354.08 208.12 183.12 44 ER5a ExonRegion 0 0.83 0.00 4.30 0.53 1.05 0.49 1.73 0.67 0.24 0.45 0.00 0.00 0.00 0.15 0.54 0.00 0.00 0.96 0.83 0.56 8.65 4.63 21.12