Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ITPRIP Gene 0 25.97 11.82 56.98 17.07 20.05 4.18 6.65 20.50 40.70 8.42 49.33 20.89 23.02 36.70 30.28 55.37 31.85 15.18 11.72 1.54 60.70 416.79 285.74 2 337478 Transcript 0 3.25 0.00 8.82 1.19 1.43 0.16 0.35 4.40 12.15 2.83 22.53 1.45 3.35 21.34 11.10 5.90 24.72 2.49 6.01 0.00 36.35 126.04 89.52 3 458723 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 278071 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 358187 Transcript 0 1.89 3.68 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.82 0.00 0.00 0.53 0.00 6.49 0.00 21.78 2.65 0.87 9.70 3.54 6.19 6 472915 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 0.00 0.00 3.48 0.72 0.00 0.47 0.00 1.12 4.99 1.49 19.73 0.03 1.24 10.10 4.67 2.58 18.12 0.74 5.43 0.00 22.92 44.63 24.64 8 E1a_E5a KnownJunction 1 0.00 0.00 20.79 2.86 0.00 0.00 0.00 8.95 28.50 5.86 47.49 0.00 6.01 53.92 23.98 12.13 52.73 6.72 12.61 0.00 82.60 314.74 221.60 9 ER2a ExonRegion 0 0.39 0.00 1.67 0.00 0.49 0.00 0.97 1.39 6.73 0.31 0.35 0.00 0.00 0.00 2.31 2.17 1.21 0.00 1.16 0.39 4.83 4.59 23.08 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER3a ExonRegion 0 2.01 0.03 0.65 1.93 0.03 0.00 0.42 1.66 4.07 0.00 0.00 0.00 0.00 0.85 0.65 0.98 2.09 0.00 0.00 0.00 4.89 3.92 18.62 12 E3_Da NovelBoundary 0 3.48 0.00 0.00 0.00 0.00 0.00 4.15 4.23 4.22 0.00 0.00 5.55 0.00 0.00 0.00 0.00 13.37 0.00 0.00 0.00 3.15 0.00 15.37 13 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER4a ExonRegion 0 0.00 0.98 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 1.64 0.00 0.00 1.06 0.00 8.62 0.00 8.19 5.31 1.74 7.16 7.08 12.38 15 E4_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 4.44 18.20 3.33 0.00 0.00 0.00 0.00 4.45 0.00 0.00 3.94 0.00 0.00 8.90 6.25 4.35 16 E4a_E5a KnownJunction 0 3.78 6.38 0.00 0.00 0.00 0.00 6.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 35.36 0.00 0.00 12.23 0.00 0.00 17 Ix Intron 0 1.73 0.00 14.86 1.60 8.17 0.00 2.96 16.36 11.86 1.09 1.23 0.45 1.19 0.36 1.65 3.24 1.60 4.61 12.05 4.25 4.47 6.24 22.38 18 Ix_AR1 ActiveIntronRegion 0 1.55 0.00 19.69 2.63 4.20 0.00 2.55 13.91 11.55 1.25 0.00 0.00 1.42 0.00 1.73 2.52 2.21 7.07 4.56 6.17 2.65 2.79 30.40 19 Ix_SR1 SilentIntronRegion 0 1.75 0.00 14.44 1.50 8.54 0.00 3.00 16.60 11.90 1.07 1.34 0.50 1.17 0.39 1.65 3.30 1.54 4.40 12.74 4.08 4.64 6.56 21.69 20 Ix_SR1 SilentIntronRegion 0 4.34 0.00 13.15 2.35 5.06 0.00 1.67 14.34 10.29 0.24 0.38 0.00 0.00 0.52 2.22 3.64 1.29 1.12 8.59 5.20 7.80 7.36 32.10 21 Ix Intron 0 4.56 0.81 11.98 2.67 6.54 0.09 3.73 22.64 15.49 0.91 1.07 1.69 1.25 0.73 1.48 3.79 1.71 4.91 10.58 4.53 7.27 10.13 22.10 22 Ix_AR5 ActiveIntronRegion 0 5.31 0.72 13.18 3.57 7.06 0.32 3.09 24.03 11.50 0.98 1.79 3.29 1.19 0.53 2.12 4.19 1.45 3.28 8.55 3.46 6.59 11.83 24.94 23 Ix_AR4 ActiveIntronRegion 0 16.09 3.08 23.14 3.65 7.09 0.00 3.85 25.76 17.73 2.46 0.98 1.16 0.78 0.68 1.53 5.08 3.01 6.15 7.59 5.34 9.54 8.30 26.71 24 Ix_SR4 SilentIntronRegion 0 2.90 0.45 10.37 2.82 6.53 0.00 4.73 25.54 19.70 0.87 1.08 0.64 1.70 1.11 1.65 4.55 2.20 6.10 10.56 4.26 7.74 11.53 27.29 25 Ix_AR3 ActiveIntronRegion 0 2.12 0.00 10.32 4.22 6.47 0.00 1.02 31.84 15.86 0.00 0.00 0.00 2.42 3.61 5.71 6.90 0.00 7.57 0.62 2.40 4.76 5.24 24.82 26 Ix_SR3 SilentIntronRegion 0 2.72 0.00 11.03 3.31 8.03 0.00 3.97 35.06 17.29 0.00 0.00 0.00 0.00 0.46 0.00 7.22 0.00 5.54 3.19 4.26 4.41 9.82 15.52 27 Ix_AR2 ActiveIntronRegion 0 0.99 0.62 11.46 1.63 8.16 0.00 4.53 22.67 17.07 0.14 0.30 1.64 2.20 0.66 0.31 2.78 0.00 7.88 10.30 6.80 9.33 7.71 9.59 28 Ix_SR2 SilentIntronRegion 0 1.03 0.33 7.00 0.98 6.31 0.00 3.40 17.51 14.32 0.20 0.47 1.73 0.62 0.20 0.52 1.68 1.60 3.72 19.76 6.10 5.72 9.31 12.66 29 ER5a ExonRegion 0 0.00 0.70 4.95 0.84 0.75 0.31 0.75 2.08 4.89 1.78 5.59 1.01 0.55 6.36 4.91 5.89 5.62 5.13 1.70 0.93 14.44 42.75 27.71 30 E5_Da KnownBoundary 0 0.00 0.00 2.54 1.73 0.00 0.00 5.17 2.55 1.79 0.00 2.58 0.00 0.00 0.00 0.00 3.93 0.00 5.10 0.00 0.00 8.83 8.88 35.43 31 ER5b ExonRegion 0 10.56 6.87 25.89 7.39 9.52 2.35 5.03 12.86 28.70 5.08 35.45 11.83 13.33 26.35 14.57 33.23 21.33 10.13 7.10 1.07 42.04 269.66 186.48 32 E5_Ab KnownBoundary 1 37.71 20.92 133.14 52.17 71.22 6.76 26.10 61.69 128.82 19.47 164.46 75.02 80.68 122.96 46.73 151.33 137.73 34.74 23.91 2.36 177.18 1337.77 736.68 33 ER5c ExonRegion 0 53.92 16.58 128.66 46.30 51.56 11.84 18.23 51.04 108.03 13.41 118.02 78.18 74.86 79.82 56.56 128.60 90.03 29.97 28.81 2.00 139.60 1080.93 666.50 34 E5_Db KnownBoundary 0 62.53 39.53 149.43 67.49 62.73 4.60 24.07 36.72 96.99 15.45 113.34 86.88 58.60 79.52 61.19 147.14 70.22 52.48 22.02 2.49 143.32 1128.04 733.44 35 E5b_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER5d ExonRegion 0 57.79 24.89 125.02 37.56 43.34 8.39 11.51 39.22 73.41 17.37 90.04 40.36 43.20 67.83 65.75 111.37 57.37 29.02 21.82 2.62 110.14 799.23 551.72 37 E5_Ac KnownBoundary 1 87.72 31.77 72.65 9.42 44.65 0.00 0.00 32.53 43.46 9.83 39.01 36.46 109.90 24.60 17.06 56.57 16.46 13.85 21.65 5.94 42.07 365.63 291.00 38 ER5e ExonRegion 1 52.58 18.08 46.12 6.83 14.18 3.34 6.38 26.74 28.20 3.10 34.77 13.77 53.46 24.91 20.20 31.40 18.89 6.68 17.92 3.95 42.22 344.08 185.93 39 ER5f ExonRegion 0 19.05 0.00 9.80 1.36 5.35 1.83 2.65 10.37 3.71 1.15 15.46 8.66 4.69 3.25 8.70 8.92 3.30 0.00 0.00 0.00 8.81 68.76 55.80 40 ER5g ExonRegion 0 12.70 0.00 4.90 1.36 5.35 0.92 1.32 6.05 3.71 1.15 4.83 8.66 4.69 0.81 5.80 5.94 3.30 0.00 0.00 0.00 6.61 36.46 35.24 41 ER5h ExonRegion 0 9.74 0.00 2.21 0.00 4.28 0.00 1.06 3.11 2.96 1.15 0.39 4.33 2.81 0.00 4.64 2.97 3.30 0.00 0.00 0.00 3.53 18.75 22.32 42 IG11 Intergenic 0 2.86 1.07 22.11 17.46 3.55 0.97 2.50 13.47 13.91 1.27 2.92 2.09 1.13 1.71 1.50 3.16 1.59 1.77 19.91 10.98 5.14 51.76 45.79 43 IG11_AR8 ActiveIntergenicRegion 0 5.39 4.57 18.62 8.66 6.34 0.78 5.47 16.69 39.09 1.95 12.68 10.09 5.94 7.98 5.23 14.96 7.95 4.01 8.25 2.76 17.51 240.32 159.92 44 IG11_SR6 SilentIntergenicRegion 0 3.31 1.57 22.94 9.71 2.09 1.41 2.04 11.59 31.75 3.03 17.88 5.98 3.88 8.90 7.17 10.97 4.06 2.85 3.32 5.19 19.59 174.27 143.63 45 IG11_AR7 ActiveIntergenicRegion 0 11.71 3.05 23.63 8.95 7.53 1.03 2.85 13.52 23.99 3.53 10.69 5.16 2.61 6.43 8.32 10.31 3.71 3.70 6.57 1.60 16.11 194.17 117.56 46 IG11_SR4 SilentIntergenicRegion 0 0.98 0.00 2.80 2.26 4.29 0.00 1.59 3.79 3.89 0.71 0.00 0.49 0.00 0.00 0.85 1.23 0.00 0.72 3.96 0.85 0.68 24.41 16.69 47 IG11_AR5 ActiveIntergenicRegion 0 2.55 0.00 5.64 3.32 5.29 0.38 2.22 7.34 6.78 1.25 0.80 3.43 1.71 0.22 0.00 2.16 0.40 1.35 4.48 2.80 1.30 15.97 32.10 48 IG11_SR3 SilentIntergenicRegion 0 0.28 0.27 2.66 0.58 2.95 0.13 1.18 4.33 5.80 0.42 0.07 0.45 0.00 0.02 0.13 0.59 0.44 1.03 3.13 1.84 1.67 6.00 21.68 49 IG11_AR4 ActiveIntergenicRegion 0 4.93 0.88 63.53 47.46 3.00 2.37 2.56 27.20 13.33 1.33 0.08 0.15 0.00 0.00 0.09 0.00 0.28 0.75 46.97 21.83 1.14 6.33 19.54 50 IG11_AR3 ActiveIntergenicRegion 0 0.84 0.61 25.97 30.54 1.86 0.55 3.88 16.35 13.05 0.34 0.00 0.35 0.00 0.00 0.00 0.00 0.98 1.47 28.53 21.33 1.57 2.83 8.19 51 IG11_AR2 ActiveIntergenicRegion 0 2.02 0.00 27.44 37.15 0.00 0.00 1.21 14.73 10.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 19.11 28.77 4.41 1.45 9.19 52 IG11_SR1 SilentIntergenicRegion 0 1.34 0.34 27.68 33.12 1.56 1.09 2.66 13.29 8.22 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.28 1.81 42.62 24.12 2.91 2.37 12.59 53 IG11_AR1 ActiveIntergenicRegion 0 1.16 0.00 26.37 32.12 2.72 2.27 2.47 22.23 9.38 1.76 0.30 0.00 0.60 0.31 0.00 0.46 0.00 2.10 49.15 31.20 2.41 4.29 12.63