Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CALHM2 Gene 0 26.48 10.23 67.48 25.61 18.74 21.50 16.53 30.99 29.83 22.03 62.28 7.78 33.25 29.07 18.24 11.26 20.04 13.72 12.70 16.10 114.22 59.59 61.03 2 393235 Transcript 0 3.20 2.30 15.08 4.07 6.97 4.43 6.03 8.98 7.50 5.60 5.98 2.00 3.11 5.30 1.87 2.14 3.92 3.75 4.77 6.12 6.96 3.30 4.78 3 369788 Transcript 0 5.99 1.30 5.56 2.59 6.47 0.56 1.36 2.16 5.02 1.63 9.38 0.48 2.16 2.34 1.29 4.67 5.43 0.84 0.62 1.18 32.34 12.61 10.68 4 461631 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 463878 Transcript 0 0.46 1.06 0.40 0.22 0.29 0.40 1.36 0.28 0.40 0.88 4.63 0.00 0.04 0.87 1.07 0.64 0.71 0.00 0.00 0.23 0.51 0.46 3.13 6 260743 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 480642 Transcript 0 0.00 0.00 6.15 1.40 0.00 0.00 0.00 4.68 3.10 2.58 19.90 0.00 0.00 6.83 4.45 0.00 0.00 0.00 0.00 0.00 14.02 2.69 11.61 8 474797 Transcript 0 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 1.23 2.07 9 494180 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ER1a ExonRegion 0 0.90 0.00 3.12 2.17 2.28 0.39 2.83 2.20 6.28 2.17 2.89 0.00 0.00 1.69 0.62 0.00 2.11 0.59 1.36 0.91 3.76 1.33 0.00 11 E1a_E4d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E2_Ab NovelBoundary 0 19.56 2.63 2.57 1.47 3.99 2.78 6.18 2.55 4.69 1.58 0.00 0.00 5.68 9.24 4.45 0.00 0.00 0.00 0.00 2.43 21.99 15.55 0.00 13 ER2a ExonRegion 0 6.00 1.86 1.02 0.00 0.00 1.07 2.32 0.29 0.82 0.48 0.97 0.00 0.00 2.30 3.87 2.48 4.40 0.00 1.86 1.42 9.92 4.34 1.22 14 ER2b ExonRegion 0 67.27 5.40 6.75 4.76 8.95 17.77 33.99 9.30 3.66 7.82 20.63 0.00 0.68 11.13 10.55 13.29 18.36 1.18 9.21 7.93 60.18 27.77 56.81 15 E2_Ac KnownBoundary 0 91.05 2.70 6.24 8.26 21.14 20.78 28.40 11.67 6.48 9.05 24.37 0.00 0.00 11.65 13.35 8.46 21.51 2.57 4.61 8.18 56.40 27.31 64.79 16 E2_Ad KnownBoundary 0 78.01 3.35 10.85 2.03 37.18 42.53 68.54 7.64 1.79 6.34 25.27 0.00 5.84 14.77 8.90 4.36 4.77 2.24 14.12 0.00 77.22 35.52 124.80 17 ER2c ExonRegion 0 86.89 3.16 16.88 8.40 30.77 39.73 48.10 14.21 4.73 11.41 30.39 0.00 8.86 20.48 12.73 8.92 15.77 3.70 12.92 3.90 85.21 35.19 125.62 18 E2_Ae KnownBoundary 0 94.76 10.06 33.26 7.96 32.17 86.48 47.83 7.43 14.76 4.00 40.64 11.70 12.66 14.60 8.90 4.19 0.00 7.21 0.00 3.26 77.04 46.66 74.35 19 ER2d ExonRegion 0 81.45 8.46 22.49 9.63 33.23 70.34 53.00 10.09 8.37 8.25 39.84 2.51 8.17 17.39 7.11 4.51 5.43 4.89 6.88 2.81 97.03 43.96 116.52 20 ER2e ExonRegion 0 20.78 5.93 22.92 6.05 9.33 15.26 12.24 11.82 12.82 7.44 43.50 2.18 8.63 13.79 10.10 6.94 17.92 6.40 4.86 2.86 109.73 50.04 54.77 21 E2a_E3a KnownJunction 0 0.00 2.96 0.00 0.00 0.00 0.00 1.94 0.00 0.00 1.53 5.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.50 22 E2a_E4c KnownJunction 0 3.26 0.00 23.71 3.86 11.88 5.79 0.00 7.68 8.71 2.79 24.53 0.00 0.00 4.94 4.45 8.54 0.00 2.16 19.01 0.00 47.26 15.86 39.18 23 E2a_E4d KnownJunction 0 7.04 0.00 14.01 7.33 4.24 0.00 0.00 5.05 12.18 3.25 23.95 0.00 6.49 4.71 0.00 11.54 8.60 2.53 0.00 0.00 85.62 32.09 26.89 24 E2a_E5a KnownJunction 0 0.00 0.00 6.15 1.40 0.00 0.00 0.00 4.68 3.10 2.58 19.90 0.00 0.00 6.83 4.45 0.00 0.00 0.00 0.00 0.00 14.02 2.69 11.61 25 E2a_E5b NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 4.83 0.00 0.00 0.00 0.00 0.00 0.00 11.31 5.33 28.17 26 ER3a ExonRegion 0 1.37 0.23 1.19 0.66 0.86 1.21 2.14 0.83 1.20 1.10 8.72 0.00 0.12 2.61 3.20 1.92 2.13 0.00 0.00 0.69 1.53 1.37 5.89 27 E3a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER4a ExonRegion 0 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 1.23 2.07 29 ER4b ExonRegion 0 2.52 0.30 3.44 1.39 1.45 2.01 1.07 1.19 5.76 1.96 5.35 0.03 0.62 1.25 3.05 0.56 2.79 1.01 1.18 1.13 3.98 6.46 3.67 30 E4_Ac KnownBoundary 0 3.26 2.70 1.60 1.50 0.00 5.00 6.14 8.26 0.00 1.67 6.53 0.00 0.00 2.47 0.00 0.00 11.31 4.35 0.00 0.00 5.62 8.33 11.44 31 ER4c ExonRegion 0 7.50 1.90 26.34 5.17 2.36 11.91 4.85 11.46 16.60 6.87 44.98 4.96 14.25 14.10 7.86 6.23 9.77 7.71 10.58 3.18 68.72 48.67 34.58 32 E4_Ad KnownBoundary 0 0.00 3.35 41.90 11.39 3.82 23.40 7.86 18.28 10.71 5.86 43.64 0.00 6.82 11.48 10.75 12.13 4.68 12.48 4.42 0.00 78.77 38.64 15.88 33 ER4d ExonRegion 0 20.50 7.50 60.23 20.54 13.59 12.69 20.46 19.61 41.44 17.39 87.80 12.99 29.18 35.32 25.06 13.12 28.87 10.02 14.48 5.05 163.94 97.42 93.38 34 E4a_E5a KnownJunction 0 0.00 5.39 17.21 10.55 7.56 2.27 3.93 6.65 16.29 5.69 16.37 5.55 6.66 13.07 0.00 3.42 29.73 2.57 13.74 0.00 77.04 24.13 19.29 35 E4a_E5b KnownJunction 0 25.63 3.09 79.54 37.29 29.71 31.00 41.78 28.92 50.12 26.57 102.60 0.00 37.01 36.20 44.50 3.50 28.14 18.65 15.62 7.54 191.26 115.06 122.41 36 E5_Aa NovelBoundary 0 9.93 2.83 22.35 9.39 0.00 7.84 5.87 9.16 12.93 11.77 14.48 0.00 0.00 4.71 0.00 0.00 3.83 5.68 0.00 8.50 8.34 2.57 4.35 37 ER5a ExonRegion 0 21.74 7.10 36.91 15.59 12.09 13.09 7.15 26.62 24.92 17.47 38.38 8.33 38.79 24.49 12.71 6.75 14.63 8.76 9.51 12.86 82.31 38.42 40.26 38 E5_Da KnownBoundary 0 24.82 29.01 40.83 20.31 27.16 14.48 18.15 27.27 27.60 15.55 26.22 30.46 47.40 23.07 10.75 3.33 7.85 9.00 8.66 10.74 51.09 30.80 37.73 39 ER5b ExonRegion 0 11.81 17.74 47.39 14.76 19.79 17.78 12.04 20.62 19.40 17.28 26.23 11.94 35.94 19.49 9.58 1.20 10.24 11.63 7.72 11.74 68.79 21.21 30.68 40 E5_Db KnownBoundary 0 7.56 8.75 75.40 17.91 21.31 32.25 16.87 20.58 27.11 24.82 31.01 0.00 41.23 7.42 8.90 0.00 3.93 18.65 9.41 5.69 73.58 30.13 59.58 41 ER5c ExonRegion 0 13.77 7.31 80.32 23.05 15.99 11.43 9.13 30.81 33.21 28.87 57.20 7.71 54.99 23.48 10.96 8.83 14.48 16.27 7.53 18.84 110.64 38.24 52.25 42 E5_Ab KnownBoundary 0 34.08 11.12 87.70 30.37 7.72 15.96 8.21 49.78 25.52 30.70 65.86 18.01 92.04 29.67 5.19 7.35 8.23 24.87 8.38 20.07 101.62 28.41 64.36 43 ER5d ExonRegion 0 69.22 24.71 150.54 50.46 37.82 48.55 44.64 68.32 73.27 44.06 151.76 22.29 106.22 53.55 28.50 16.27 38.54 24.77 19.63 21.25 314.95 156.88 140.48 44 E5_Dc KnownBoundary 0 116.09 35.65 148.58 53.77 51.27 76.32 56.31 56.72 89.00 37.88 147.98 55.22 133.11 41.91 24.11 11.54 28.70 16.13 20.80 20.84 304.38 163.98 118.40 45 ER5e ExonRegion 0 54.15 17.65 96.52 31.50 21.64 33.71 27.63 31.97 48.98 23.71 105.35 15.32 98.39 38.03 28.79 10.65 34.10 13.32 12.18 22.26 247.13 112.62 103.23 46 E5_Ac KnownBoundary 0 42.16 16.25 137.93 49.64 27.16 16.98 35.73 54.75 51.65 33.52 96.87 6.30 119.15 42.15 28.56 10.25 47.87 16.25 17.32 24.16 223.39 109.18 104.74 47 ER5f ExonRegion 0 27.54 8.60 116.38 43.91 18.45 24.48 17.64 45.91 53.26 31.86 116.64 17.83 93.36 54.18 31.99 21.15 37.39 14.70 17.16 20.93 221.47 119.18 110.02 48 E5_Dd KnownBoundary 0 54.68 14.14 129.18 54.70 15.87 36.34 19.74 60.01 70.34 41.31 107.34 5.70 137.98 66.10 34.74 33.07 29.08 15.96 25.32 21.67 230.24 147.63 96.37 49 ER5g ExonRegion 0 63.15 13.82 104.16 37.59 22.92 37.07 22.44 42.84 62.61 37.55 146.69 14.51 95.51 75.17 52.18 36.87 43.05 27.19 13.34 19.64 261.23 131.43 169.21 50 E5_De KnownBoundary 1 40.30 21.11 105.17 41.15 35.91 37.48 51.05 48.84 40.34 22.70 86.97 7.20 53.24 69.05 9.39 32.90 20.29 32.08 8.38 14.96 179.65 67.60 112.25 51 ER5h ExonRegion 0 42.27 12.78 116.27 38.20 26.56 37.72 26.81 55.20 46.56 34.51 117.09 5.04 47.51 52.24 23.30 23.13 28.95 22.10 14.00 15.72 219.57 105.35 118.33 52 E5_Df KnownBoundary 0 0.00 2.50 59.78 7.72 3.65 14.37 3.93 21.48 13.63 13.30 2.63 0.00 0.00 12.01 8.90 8.29 8.79 13.97 4.05 20.45 13.78 0.00 7.85 53 E5f_E6a KnownJunction 0 31.04 9.60 64.78 25.60 12.39 9.82 9.80 26.21 21.99 25.63 84.86 12.60 26.62 41.50 29.92 4.36 29.55 7.34 11.86 3.07 140.11 81.44 77.51 54 ER5i ExonRegion 0 8.70 6.89 42.13 10.03 18.62 12.90 15.28 24.74 16.21 14.62 15.04 5.99 9.33 14.21 4.98 6.42 9.66 10.67 12.95 17.46 17.11 8.57 14.35 55 E5_Dg NovelBoundary 0 20.60 20.26 73.89 19.88 15.87 39.41 34.84 39.76 15.19 23.40 24.11 5.85 19.97 14.36 9.64 0.00 20.38 18.78 17.41 14.76 27.43 11.14 11.18 56 I5 Intron 0 15.83 16.07 64.17 18.83 29.32 25.03 20.65 32.30 18.81 19.90 19.86 8.41 8.74 14.24 13.55 12.84 14.44 29.14 30.04 26.23 16.48 15.15 16.09 57 I5_AR1 ActiveIntronRegion 0 5.93 11.97 60.12 12.52 31.12 23.39 20.03 31.40 15.47 17.48 17.33 11.42 13.10 13.71 12.22 7.07 16.20 13.13 24.09 19.38 12.03 9.34 9.05 58 I5_AR2 ActiveIntronRegion 1 13.06 19.64 21.64 10.79 17.28 24.68 20.69 21.38 8.26 2.95 16.46 0.00 3.62 11.51 5.22 9.17 7.73 17.95 30.31 23.89 11.40 9.58 10.32 59 I5_SR3 SilentIntronRegion 1 23.24 22.83 78.56 27.86 37.79 34.80 25.68 40.59 25.86 22.44 26.15 9.74 7.85 16.21 16.16 18.86 12.87 47.87 38.50 34.82 24.47 21.05 25.79 60 I5_AR3 ActiveIntronRegion 1 30.42 12.57 75.11 21.05 14.93 10.84 16.61 28.44 19.13 33.53 17.86 2.13 4.47 16.92 17.52 17.27 22.95 35.84 32.16 32.49 14.48 20.37 16.41 61 E6_Aa NovelBoundary 0 10.96 9.47 96.45 37.32 31.83 30.38 10.38 48.67 31.48 36.61 22.95 5.40 0.00 42.73 29.79 22.99 16.46 78.64 47.06 46.66 29.84 25.23 22.96 62 ER6a ExonRegion 0 45.03 21.64 127.50 56.10 37.75 40.42 27.96 57.43 45.54 40.79 102.03 11.17 31.35 47.82 35.37 18.93 33.32 27.79 26.48 34.93 166.18 98.15 89.93 63 ER6b ExonRegion 0 4.94 2.03 1.63 0.45 15.16 0.61 1.77 1.15 2.06 1.15 3.22 1.44 0.00 0.00 0.00 0.00 3.30 0.00 0.00 2.13 1.47 1.39 3.92 64 IG50 Intergenic 0 3.72 14.09 30.22 8.40 21.87 22.76 17.12 15.45 11.04 17.68 6.60 7.75 5.77 11.56 12.01 12.61 13.32 27.18 26.36 26.85 8.43 13.36 8.81 65 IG50_SR1 SilentIntergenicRegion 0 3.74 14.74 31.77 8.60 22.76 23.73 17.92 16.16 11.61 18.54 6.92 8.23 6.02 12.29 12.60 13.20 14.11 28.43 28.01 28.20 8.96 14.14 9.21