Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM180 Gene 0 17.26 26.06 37.11 28.10 20.94 33.20 20.74 45.08 21.82 17.05 14.32 7.98 8.03 20.20 23.52 22.06 15.05 54.54 26.02 44.50 11.15 4.87 13.26 2 369931 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 238936 Transcript 0 1.66 2.03 2.83 1.62 0.84 6.92 2.82 3.10 0.53 1.75 0.55 0.60 0.66 0.91 1.39 1.96 0.62 3.80 1.38 3.06 0.16 0.00 0.00 4 447593 Transcript 0 0.00 0.00 1.06 0.00 0.00 0.00 0.00 2.63 0.00 0.89 2.21 3.54 0.00 0.00 0.00 0.00 0.00 0.05 2.21 0.00 0.03 0.00 0.00 5 369930 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 469294 Transcript 0 4.99 4.33 10.95 7.84 8.64 4.55 13.92 17.21 8.17 1.72 3.60 0.65 1.72 2.64 3.51 9.81 2.21 10.42 7.47 7.56 4.61 0.76 4.42 7 483550 Transcript 0 1.19 1.60 8.95 4.35 9.56 6.68 6.37 19.85 10.33 4.54 0.93 0.63 1.33 1.52 1.28 1.09 1.49 4.90 3.19 6.88 0.58 0.11 1.35 8 ER1a ExonRegion 0 0.00 0.00 0.03 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 0.00 0.00 1.53 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 11 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 Ix Intron 0 10.64 2.92 1.31 0.00 3.84 3.95 9.51 1.87 1.34 0.00 8.33 5.12 8.32 5.63 9.07 2.13 2.42 0.00 4.58 7.64 0.00 0.00 10.55 13 Ix_SR1 SilentIntronRegion 0 10.73 2.96 1.33 0.00 3.86 4.01 9.65 1.88 1.34 0.00 8.45 5.13 8.44 5.71 9.20 2.17 2.45 0.00 4.64 7.75 0.00 0.00 10.70 14 Ix Intron 0 3.86 4.63 2.49 8.32 6.09 20.88 13.26 8.21 13.41 3.11 2.64 8.12 1.76 8.61 6.53 9.47 1.50 12.97 2.90 14.53 2.99 3.79 10.70 15 Ix_AR1 ActiveIntronRegion 0 3.91 4.71 2.54 8.47 6.20 21.22 13.50 8.36 13.65 3.17 2.69 8.27 1.79 8.77 6.65 9.65 1.50 13.20 2.95 14.78 3.05 3.86 10.89 16 ER3a ExonRegion 0 1.60 0.00 0.49 0.35 0.56 0.00 0.45 0.00 0.59 0.01 0.05 0.00 2.49 2.29 0.87 1.19 1.06 0.00 1.31 0.00 2.34 1.75 0.91 17 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER4a ExonRegion 0 1.84 0.00 2.14 0.23 0.74 0.00 1.87 1.21 2.31 2.28 1.58 2.66 10.96 2.45 8.28 5.01 5.01 1.96 1.00 0.00 9.88 0.18 3.11 19 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E4a_E6a KnownJunction 0 0.00 0.00 1.45 0.00 4.33 0.00 0.00 2.09 3.24 2.82 2.68 0.00 0.00 12.13 4.45 8.12 0.00 4.31 4.52 0.00 10.81 0.00 7.17 21 Ix Intron 0 8.83 8.83 21.89 13.23 7.44 15.14 14.03 17.90 10.07 10.99 9.74 4.05 3.09 8.08 5.81 9.04 6.02 41.33 11.90 21.81 2.30 0.18 9.95 22 Ix_SR1 SilentIntronRegion 0 8.86 8.86 21.97 13.28 7.46 15.19 14.08 17.96 10.11 11.03 9.77 4.06 3.10 8.10 5.83 9.06 6.04 41.47 11.94 21.88 2.31 0.18 9.98 23 ER5a ExonRegion 0 3.31 4.05 5.66 3.24 1.67 13.83 5.63 6.19 1.06 3.50 1.10 1.21 1.32 1.81 2.79 3.91 1.25 7.60 2.76 6.13 0.32 0.00 0.00 24 E5_Ab KnownBoundary 0 3.33 19.93 15.17 20.21 18.51 44.52 30.52 34.01 6.42 10.05 4.32 12.60 13.64 9.95 9.89 22.47 4.77 40.58 31.91 23.46 0.00 0.00 7.68 25 ER5b ExonRegion 0 0.00 0.73 19.71 11.36 3.20 17.32 12.28 34.57 8.47 10.99 4.40 4.21 4.43 4.56 4.27 6.19 3.85 10.57 2.12 27.48 0.24 0.00 0.00 26 E5_Ac KnownBoundary 0 0.00 0.00 24.25 8.82 11.29 17.77 19.43 30.23 6.02 14.75 7.32 0.00 0.00 4.59 0.00 4.27 4.49 23.84 0.00 36.05 0.00 0.00 0.00 27 ER5c ExonRegion 0 1.35 6.50 39.09 19.38 9.29 23.76 13.53 41.14 14.55 23.66 13.17 3.85 12.73 14.01 26.75 15.68 20.93 43.57 17.40 54.97 0.85 1.17 7.36 28 E5_Da NovelBoundary 0 0.00 3.16 14.81 11.92 0.00 10.28 6.14 13.92 4.14 6.61 2.32 6.30 13.64 0.00 0.00 8.20 4.39 29.72 4.52 6.14 0.00 0.00 0.00 29 E5a_E6a KnownJunction 0 2.82 3.09 60.58 47.05 0.00 35.60 24.42 79.93 26.91 29.39 16.90 12.60 20.13 24.07 30.90 8.54 33.75 99.45 52.05 92.62 5.68 0.00 4.35 30 E6_Aa NovelBoundary 0 3.33 6.38 11.53 20.38 3.14 7.50 3.89 15.40 8.77 7.90 2.68 5.40 0.00 4.94 4.45 0.00 4.11 26.32 4.61 11.19 2.47 3.12 0.00 31 ER6a ExonRegion 0 8.04 10.69 68.67 44.13 11.67 40.03 16.47 90.81 47.56 33.10 35.40 15.01 8.89 33.19 43.50 39.67 49.11 114.75 41.56 86.82 29.45 7.59 16.89 32 E6_Da NovelBoundary 0 0.00 5.85 13.87 3.16 3.48 5.22 14.93 26.66 5.79 6.80 5.26 0.00 0.00 7.53 0.00 0.00 0.00 35.15 0.00 24.42 2.41 0.00 0.00 33 E6a_E7a KnownJunction 0 0.00 2.57 0.00 3.83 0.00 10.45 2.21 16.51 7.00 0.00 8.05 0.00 0.00 0.00 6.18 12.30 0.00 4.97 0.00 0.00 0.00 0.00 4.18 34 E6a_E8b KnownJunction 0 3.78 18.81 79.92 32.93 8.57 20.90 1.68 99.28 45.23 45.53 17.21 11.85 21.75 19.19 8.90 24.01 30.48 65.66 22.87 77.60 17.30 0.00 6.83 35 E7_Aa NovelBoundary 0 35.86 15.33 21.47 32.63 9.93 20.16 17.09 19.10 12.79 4.14 2.11 17.26 12.01 22.66 9.52 16.92 13.00 20.19 14.59 20.58 7.78 4.90 15.54 36 ER7a ExonRegion 0 4.43 6.10 11.41 5.23 12.83 15.30 16.28 22.43 10.86 2.25 5.20 3.14 2.26 7.34 10.54 9.63 0.34 9.47 6.74 13.94 4.36 3.66 5.60 37 E7_Da KnownBoundary 0 419.63 347.96 4163.25 4178.12 335.06 232.59 426.08 4345.76 3696.23 3719.71 216.63 63.02 85.71 43.85 63.66 439.29 386.82 4654.80 256.85 406.96 208.75 128.65 289.64 38 ER7b ExonRegion 0 4.99 4.33 10.95 7.84 8.64 4.55 13.92 17.21 8.17 1.72 3.60 0.65 1.72 2.64 3.51 9.81 2.21 10.42 7.47 7.56 4.61 0.76 4.42 39 E7_Db NovelBoundary 0 0.00 0.00 10.32 8.69 0.00 22.37 8.52 12.40 9.98 3.04 0.00 0.00 0.00 4.59 0.00 0.00 0.00 4.85 4.52 11.57 2.35 0.00 0.00 40 E8_Aa NovelBoundary 0 0.00 3.35 12.68 11.25 7.56 24.76 24.38 16.63 9.46 7.52 2.37 0.00 0.00 2.47 4.45 3.76 4.77 7.01 12.24 8.37 6.18 0.00 0.00 41 ER8a ExonRegion 0 3.78 5.46 14.15 12.05 7.83 10.92 15.55 16.36 10.21 10.40 2.80 2.53 3.34 1.45 5.11 2.95 2.79 10.40 8.57 9.82 2.31 0.43 2.58 42 E8_Ab KnownBoundary 0 5.78 0.00 35.95 19.44 11.04 10.22 8.74 66.25 28.04 20.63 0.00 0.00 0.00 0.00 0.00 6.66 0.00 6.47 3.58 10.55 8.46 0.00 3.67 43 ER8b ExonRegion 0 19.82 21.27 93.52 61.40 43.23 80.38 32.22 122.63 67.60 49.42 32.07 12.27 21.01 47.42 69.90 53.13 41.05 163.97 65.50 116.89 21.05 2.93 32.82 44 E8_Da NovelBoundary 0 0.00 0.00 24.93 5.66 39.13 22.03 14.97 51.47 19.24 10.05 0.00 0.00 19.80 4.71 5.69 0.00 4.30 12.06 13.93 25.50 0.00 0.00 3.93 45 E8a_E9a KnownJunction 0 42.82 39.27 89.44 68.32 31.32 150.08 62.67 73.19 38.95 32.37 60.02 17.41 26.78 70.58 85.91 83.65 53.11 241.55 105.70 133.14 24.71 11.51 63.00 46 E8_Db NovelBoundary 0 0.00 0.00 9.64 5.73 60.95 27.14 18.28 26.45 15.60 15.20 0.00 0.00 0.00 0.00 0.00 3.50 4.21 17.08 0.00 23.84 5.44 3.12 3.67 47 E8b_E11a KnownJunction 0 0.00 0.00 3.16 0.00 4.16 0.00 0.00 17.99 7.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER8c ExonRegion 0 0.00 0.00 10.87 3.39 19.42 9.70 7.35 29.83 13.27 5.25 0.00 0.00 1.97 2.57 0.00 0.00 1.60 4.41 2.67 13.59 0.00 0.00 1.42 49 E9_Aa NovelBoundary 0 7.19 3.35 12.48 9.79 19.86 7.89 13.60 31.42 16.78 10.15 0.00 0.00 7.30 0.00 0.00 0.00 4.21 18.65 4.80 2.43 0.00 0.00 0.00 50 ER9a ExonRegion 0 18.04 17.00 53.97 44.58 20.29 57.79 26.47 67.25 34.36 29.03 23.34 20.89 18.95 35.77 38.44 32.19 33.68 112.39 38.98 78.67 19.59 4.30 13.54 51 E9_Da NovelBoundary 0 21.49 9.34 34.03 18.71 3.82 42.42 27.69 28.05 28.18 19.42 4.74 0.00 0.00 8.01 24.85 4.36 8.60 59.49 9.32 15.08 0.00 2.27 0.00 52 E9a_E10a KnownJunction 0 16.97 21.31 37.64 38.26 19.02 19.70 12.28 44.65 17.79 15.47 24.95 18.76 44.96 18.72 26.70 39.39 27.12 75.61 11.67 57.72 11.86 17.27 16.82 53 E10_Aa NovelBoundary 0 2.82 6.05 29.15 24.54 8.15 18.80 15.06 27.60 23.58 8.81 4.47 0.00 0.00 2.35 0.00 0.00 0.00 29.85 4.05 28.89 8.03 0.00 10.93 54 ER10a ExonRegion 0 11.67 18.85 59.03 52.84 15.96 53.12 16.31 66.27 36.15 28.55 26.24 12.14 15.59 35.75 32.03 29.75 30.32 103.53 35.66 77.89 21.54 6.83 14.49 55 E10_Da NovelBoundary 0 2.89 0.00 14.49 7.23 4.33 19.36 10.20 11.05 7.20 15.82 4.79 0.00 0.00 2.47 0.00 0.00 0.00 9.08 4.80 8.76 0.00 0.00 7.77 56 E10a_E12a KnownJunction 0 7.56 21.25 63.04 81.71 28.10 72.00 19.12 64.61 23.61 22.24 34.43 6.15 20.13 53.03 44.01 33.41 18.51 137.50 13.55 57.46 14.46 15.12 11.87 57 E10a_E13a KnownJunction 0 0.00 0.00 1.63 0.00 0.00 0.00 0.00 6.04 0.00 1.48 4.63 6.30 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 0.00 0.00 0.00 58 E11_Aa NovelBoundary 0 9.19 3.35 13.28 2.06 8.66 7.50 14.79 15.69 11.43 7.25 0.00 0.00 0.00 2.47 0.00 0.00 0.00 12.06 8.66 5.43 0.00 0.00 0.00 59 ER11a ExonRegion 0 1.00 0.96 7.62 1.98 6.81 6.11 2.59 15.20 10.37 2.50 0.91 0.00 0.00 2.08 0.00 1.40 1.56 4.79 1.50 4.10 0.00 0.00 1.39 60 E11_Da NovelBoundary 0 10.67 0.00 19.22 6.66 25.89 19.14 33.78 34.71 28.88 17.43 2.63 0.00 0.00 2.41 5.19 0.00 0.00 10.40 16.94 9.27 0.00 0.00 3.41 61 E12_Aa NovelBoundary 0 6.89 11.51 42.96 13.35 69.95 60.42 39.61 61.41 39.44 28.63 2.68 0.00 12.99 6.95 5.56 0.00 4.68 59.73 21.93 30.30 0.00 0.00 11.44 62 ER12a ExonRegion 0 37.22 59.08 60.42 47.18 41.55 54.56 37.28 71.59 33.12 25.61 23.21 12.98 11.00 34.50 38.91 38.11 20.74 84.70 45.68 71.09 17.50 9.78 25.46 63 E12_Da NovelBoundary 0 6.96 9.27 20.40 11.92 17.23 35.38 10.33 35.45 21.76 11.90 4.69 0.00 0.00 0.00 0.00 3.59 3.55 24.04 16.47 17.90 5.93 0.00 0.00 64 I12 Intron 0 5.50 13.82 18.07 7.16 25.36 26.46 20.88 20.31 9.11 8.60 2.27 0.96 3.93 3.84 6.81 4.49 5.26 16.34 9.89 10.35 3.14 2.45 5.67 65 I12_SR1 SilentIntronRegion 0 11.31 11.85 7.10 10.85 24.67 24.94 21.88 25.02 6.26 9.13 0.00 0.00 4.15 2.41 7.71 4.33 6.41 13.39 10.83 9.30 1.07 4.05 7.13 66 I12_SR2 SilentIntronRegion 0 4.32 14.31 20.49 6.42 25.66 26.93 20.80 19.43 9.76 8.54 2.76 1.17 3.91 4.16 6.67 4.55 5.04 17.04 9.74 10.63 3.60 2.11 5.39 67 ER13a ExonRegion 0 0.00 0.00 1.49 0.00 0.00 0.00 0.00 1.73 0.00 1.15 1.93 4.33 0.00 0.00 0.00 0.00 0.00 0.16 2.22 0.00 0.10 0.00 0.00 68 I13 Intron 0 2.55 4.90 12.47 6.54 19.34 18.41 10.63 15.52 10.35 8.92 3.10 3.17 6.20 9.09 9.73 5.97 10.60 22.13 15.35 18.80 6.19 3.35 7.08 69 I13_SR1 SilentIntronRegion 0 2.59 4.98 12.66 6.63 19.65 18.70 10.79 15.76 10.50 9.07 3.15 3.22 6.30 9.24 9.86 6.06 10.77 22.48 15.57 19.10 6.29 3.40 7.19 70 E14_Aa NovelBoundary 0 172.62 330.86 668.81 240.73 209.51 521.01 262.11 652.09 536.89 359.41 389.73 70.97 133.27 400.44 597.57 356.15 402.90 559.25 299.40 466.08 442.33 178.80 202.05 71 ER14a ExonRegion 0 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.12 0.00 0.05 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00