Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CNNM1 Gene 0 6.32 41.90 32.36 17.62 2.51 3.76 6.18 6.76 17.66 10.74 12.07 1.56 1.49 0.71 2.75 1.51 1.00 30.88 19.18 28.83 7.59 11.05 10.42 2 370534 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 356713 Transcript 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 370528 Transcript 0 0.00 0.00 7.16 3.43 0.00 2.56 0.00 0.00 1.24 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.40 0.00 2.62 0.00 5.94 0.00 5 446890 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 488090 Transcript 0 0.21 2.05 0.79 1.44 0.00 0.23 0.64 0.25 1.06 0.17 1.20 0.00 0.60 0.00 0.00 0.00 0.00 3.18 2.71 4.18 0.77 1.03 1.18 7 ER1a ExonRegion 0 0.14 0.96 3.46 0.36 0.00 0.00 0.23 0.00 0.97 0.60 0.12 0.00 0.00 0.00 0.00 0.00 0.00 2.10 1.12 0.94 0.37 0.00 1.88 8 E1_Ab KnownBoundary 0 3.63 3.09 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.53 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 3.00 6.24 2.76 4.27 9 ER1b ExonRegion 0 0.28 0.20 2.40 1.26 0.00 0.39 0.25 0.21 1.11 0.36 2.38 0.00 0.00 0.00 0.00 0.00 0.00 2.71 2.55 6.88 3.08 0.44 1.46 10 E1_Da KnownBoundary 0 0.00 2.57 1.39 0.00 0.00 0.00 1.63 2.51 1.19 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 1.78 9.60 2.43 3.15 0.00 0.00 11 E1a_E1c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 12 ER1c ExonRegion 0 0.00 3.33 1.24 0.68 0.00 0.62 0.05 0.86 0.70 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 3.76 4.35 5.86 3.04 1.41 1.98 13 E1_Ac KnownBoundary 0 0.00 3.03 0.00 2.93 0.00 0.00 0.00 2.42 1.10 0.00 4.69 0.00 0.00 0.00 0.00 0.00 0.00 10.99 3.76 8.63 5.00 0.00 0.00 14 ER1d ExonRegion 0 0.00 4.66 2.44 0.09 0.00 0.21 0.00 0.91 2.12 1.44 4.30 0.00 0.00 0.00 0.00 0.00 0.00 7.35 5.98 11.62 2.03 2.39 1.06 15 E1_Db KnownBoundary 0 0.00 0.00 4.55 0.00 0.00 2.33 0.00 0.00 1.79 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.10 0.00 8.69 9.14 0.00 4.27 16 E1b_E1d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER1e ExonRegion 0 0.00 0.00 3.29 0.87 0.00 1.17 0.81 0.00 5.50 2.69 6.95 0.00 0.00 0.00 0.00 0.00 0.00 10.48 2.24 8.11 4.86 0.42 0.87 18 E1_Ad KnownBoundary 0 0.00 0.00 4.58 1.96 0.00 0.00 1.94 0.00 14.03 2.53 2.68 0.00 0.00 0.00 0.00 0.00 0.00 20.15 0.00 7.80 0.00 2.63 4.35 19 ER1f ExonRegion 0 0.32 6.81 8.18 3.78 0.13 0.46 1.08 1.67 8.02 5.04 8.53 0.00 0.00 0.00 0.00 0.00 0.33 26.72 8.48 22.43 4.57 3.07 5.09 20 E1c_E2a KnownJunction 0 0.00 9.67 12.33 9.92 0.00 0.00 1.77 6.70 17.27 8.25 9.48 0.00 0.00 0.00 0.00 0.00 0.00 20.77 37.08 29.02 12.36 14.45 16.82 21 ER2a ExonRegion 0 0.75 28.44 15.58 8.91 0.00 0.99 3.82 4.55 18.87 7.40 12.36 0.00 0.00 0.00 0.00 0.00 0.00 31.03 22.43 33.26 11.23 9.80 14.72 22 E2a_E3a KnownJunction 0 0.00 33.94 13.25 10.22 0.00 2.50 4.06 6.70 15.65 6.93 19.58 0.00 0.00 0.00 0.00 0.00 0.00 30.43 13.46 26.21 7.97 2.88 11.52 23 ER3a ExonRegion 0 0.33 26.77 14.11 7.43 0.91 1.91 3.00 6.31 20.77 12.70 14.46 0.00 0.00 0.00 0.00 0.00 0.00 37.68 18.14 35.29 13.83 12.09 9.77 24 E3a_E4a KnownJunction 0 3.78 5.92 12.06 7.09 0.00 2.67 4.02 1.85 20.43 15.58 12.00 0.00 0.00 0.00 0.00 0.00 0.00 50.53 8.85 34.32 13.53 8.45 15.71 25 ER4a ExonRegion 0 2.27 20.53 12.80 8.71 1.42 2.13 3.96 5.55 20.61 9.88 15.36 1.07 0.00 0.00 0.00 0.00 0.00 31.96 10.70 33.99 7.89 11.70 10.74 26 E4a_E5a KnownJunction 0 0.00 24.34 14.58 12.55 3.90 2.56 3.80 2.42 18.11 7.44 19.79 0.00 0.00 0.00 0.00 0.00 0.00 25.70 4.80 37.78 3.15 6.18 11.27 27 ER5a ExonRegion 0 0.00 24.59 12.13 13.68 1.77 4.90 0.97 1.54 15.85 8.30 18.05 0.00 0.00 0.00 0.00 0.00 0.00 37.25 7.58 32.21 1.67 21.98 11.72 28 E5a_E6a KnownJunction 0 0.00 9.27 16.50 12.92 0.00 14.20 0.00 0.00 18.72 12.84 24.53 0.00 0.00 0.00 0.00 0.00 0.00 45.02 14.21 51.52 0.00 20.51 7.85 29 E5a_E8a NovelJunction 0 0.00 0.00 1.21 2.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.46 0.00 0.00 0.00 0.00 30 ER6a ExonRegion 0 0.00 10.80 15.75 7.52 0.56 12.84 0.00 3.96 14.26 10.20 18.36 3.79 0.00 0.00 0.00 0.00 0.00 40.84 20.97 45.30 0.69 20.01 13.83 31 E6a_E8a KnownJunction 0 0.00 17.96 15.73 2.06 3.48 15.96 0.00 6.70 14.44 9.00 9.63 0.00 0.00 0.00 0.00 0.00 0.00 26.45 22.40 46.40 2.84 16.84 28.94 32 ER7a ExonRegion 0 0.63 3.32 1.89 1.51 0.00 0.54 1.59 0.76 1.62 0.51 2.01 0.00 0.00 0.00 0.00 0.00 0.00 3.00 4.14 5.68 1.30 3.08 2.18 33 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER8a ExonRegion 0 1.79 18.14 18.68 14.43 2.33 3.52 2.88 3.26 27.20 12.00 15.17 0.24 0.00 0.00 0.00 0.00 0.00 51.89 25.29 38.56 12.40 15.35 12.43 35 E8_Da KnownBoundary 0 0.00 0.00 3.16 0.00 0.00 2.27 3.89 0.00 1.27 0.00 2.37 0.00 0.00 0.00 0.00 0.00 0.00 8.04 4.33 9.27 0.00 0.00 0.00 36 E8a_E9a KnownJunction 0 9.48 27.50 26.11 10.69 0.00 2.90 3.89 2.42 23.26 15.20 11.63 6.00 0.00 0.00 0.00 0.00 0.00 51.94 22.12 31.96 7.54 20.33 29.02 37 ER8b ExonRegion 0 0.00 2.83 0.47 2.82 0.00 0.15 0.34 0.00 1.56 0.00 1.58 0.00 1.79 0.00 0.00 0.00 0.00 6.55 4.00 6.87 1.02 0.00 1.36 38 E8_Db NovelBoundary 0 0.00 0.00 3.22 3.73 0.00 0.00 1.94 2.30 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 13.08 5.43 0.00 0.00 0.00 39 ER9a ExonRegion 0 1.92 19.13 16.80 10.32 0.15 4.57 2.78 4.40 20.25 11.77 11.91 0.78 0.92 0.00 0.00 0.00 0.00 45.83 23.80 22.66 12.30 13.33 9.32 40 E9a_E10a KnownJunction 0 0.00 25.00 6.74 8.42 3.48 2.90 1.99 4.23 7.32 5.48 2.37 0.00 0.00 0.00 0.00 0.00 0.00 18.24 3.58 15.15 8.65 15.61 4.01 41 E9a_E11a KnownJunction 0 0.00 0.00 7.16 3.43 0.00 2.56 0.00 0.00 1.24 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.40 0.00 2.62 0.00 5.94 0.00 42 ER10a ExonRegion 0 0.17 19.02 6.72 9.00 0.75 1.36 2.90 5.89 8.47 8.37 6.06 0.00 1.13 0.00 0.00 0.00 0.00 16.46 13.42 19.29 9.31 10.06 6.30 43 E10_Da NovelBoundary 0 0.00 2.83 1.63 1.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.97 13.37 0.00 0.00 0.00 3.84 44 E10a_E11a KnownJunction 0 3.19 18.22 8.63 16.38 0.00 2.90 4.15 8.63 12.59 10.83 2.37 0.00 0.00 0.00 0.00 0.00 0.00 19.11 9.41 11.25 8.28 2.39 0.00 45 ER11a ExonRegion 0 2.32 29.39 20.22 26.87 1.31 2.55 7.74 9.54 20.78 16.11 15.94 1.78 0.00 0.00 0.00 0.00 0.00 51.32 39.29 29.70 8.56 14.03 10.28 46 E11a_E12a KnownJunction 0 3.63 59.59 33.06 27.24 0.00 2.90 8.48 10.23 34.20 16.73 7.32 0.00 0.00 0.00 0.00 0.00 0.00 37.52 31.72 30.36 2.72 24.49 8.37 47 ER12a ExonRegion 0 13.28 80.33 61.77 32.44 5.10 6.71 11.69 12.13 27.71 17.31 17.23 3.22 3.11 1.58 6.09 3.35 2.10 41.56 29.81 40.61 10.35 17.27 16.05 48 ER12b ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00