Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SH3PXD2A Gene 0 49.48 161.20 103.64 64.14 99.48 126.93 97.34 146.97 204.45 96.18 58.88 45.92 39.10 52.69 22.95 62.42 65.87 271.81 140.26 179.45 465.41 295.92 328.87 2 369774 Transcript 0 8.05 4.49 12.90 12.40 5.91 9.21 10.16 12.70 16.00 19.37 40.82 22.30 19.66 28.94 17.45 37.63 42.84 62.63 48.22 16.12 261.70 126.75 162.24 3 355946 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 420222 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 315994 Transcript 0 0.00 0.00 0.01 0.00 0.00 0.21 0.31 0.00 0.26 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.06 0.00 0.00 0.69 6 IG4_AR7 ActiveIntergenicRegion 0 13.43 17.88 13.39 8.55 14.41 37.32 12.21 17.23 25.80 11.60 7.82 9.15 7.33 10.98 5.96 6.61 6.67 29.69 25.04 37.62 17.85 14.84 14.00 7 IG4_AR6 ActiveIntergenicRegion 0 21.44 27.44 20.21 18.35 25.33 34.22 15.43 18.94 20.01 11.83 3.78 4.36 4.84 3.46 3.49 5.00 2.84 15.63 28.53 22.55 11.55 14.59 11.37 8 ER1a ExonRegion 0 0.00 0.96 0.59 0.21 0.00 2.27 1.05 1.08 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.64 0.35 2.02 13.40 0.00 16.62 9 E1_Ab KnownBoundary 0 0.00 6.12 2.96 1.70 0.00 7.10 0.00 11.46 9.09 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.83 4.14 8.82 32.37 0.00 3.93 10 ER1b ExonRegion 0 0.51 16.57 13.36 5.93 3.83 5.94 9.31 16.16 19.63 9.75 0.00 0.00 0.00 0.32 0.00 0.00 0.00 108.05 25.23 50.59 49.47 17.84 30.33 11 E1a_E2a KnownJunction 0 0.00 42.56 37.31 16.05 3.31 10.28 20.71 56.11 44.56 19.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 211.04 52.43 98.24 71.35 31.05 56.85 12 I1_AR6 ActiveIntronRegion 0 0.58 11.46 22.06 4.09 13.38 0.00 15.89 5.34 4.27 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.84 6.37 12.77 2.20 0.00 6.67 13 ER2a ExonRegion 0 6.03 32.91 38.77 14.27 5.72 7.64 14.58 42.79 51.31 30.86 0.00 0.00 0.00 0.00 1.58 0.00 0.00 202.86 82.87 145.07 99.43 50.92 90.86 14 E2a_E3a KnownJunction 0 0.00 15.33 60.47 17.95 15.62 24.36 34.49 51.96 65.68 34.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 221.69 79.72 137.10 116.88 56.21 52.33 15 ER2b ExonRegion 0 2.26 25.49 48.61 15.17 8.38 16.14 21.27 41.25 60.52 33.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 215.94 68.38 136.31 127.37 55.84 63.24 16 ER3a ExonRegion 0 1.42 19.88 44.71 10.71 17.57 20.39 23.97 40.87 54.17 29.67 0.00 0.00 0.00 0.90 0.00 0.00 0.00 234.28 85.59 133.48 113.03 52.23 78.56 17 E3a_E4a KnownJunction 0 0.00 18.81 38.38 8.16 7.72 12.83 24.69 31.42 39.93 29.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 169.46 93.46 139.53 104.34 46.97 87.24 18 ER4a ExonRegion 0 2.80 33.07 42.03 11.88 10.74 17.15 22.51 36.01 52.66 30.10 0.00 0.00 0.00 0.00 0.90 0.00 0.00 203.44 62.96 119.56 99.57 49.49 83.33 19 E4a_E5a KnownJunction 0 0.00 75.18 44.59 14.42 28.35 20.33 44.74 40.29 62.50 38.76 0.00 0.00 0.00 0.00 4.45 0.00 0.00 292.83 105.13 152.83 85.25 45.62 114.90 20 ER5a ExonRegion 0 3.52 33.33 30.35 9.05 15.21 16.62 30.03 20.29 35.93 24.82 0.00 0.00 0.00 0.00 0.38 0.00 0.00 174.97 51.49 140.03 89.92 31.84 76.45 21 E5a_E8a KnownJunction 0 7.26 53.02 31.93 13.95 23.51 5.05 35.33 21.11 40.94 14.56 0.00 0.00 0.00 2.06 0.00 0.00 0.00 105.29 28.71 119.27 64.25 45.37 71.53 22 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER7a ExonRegion 0 0.00 0.00 0.03 0.00 0.00 0.64 0.93 0.00 0.77 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.19 0.00 0.01 2.07 24 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 I7 Intron 0 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 3.87 0.00 0.00 7.26 4.32 7.93 13.20 0.00 0.00 0.00 2.94 0.00 11.75 26 I7_AR1 ActiveIntronRegion 0 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 4.24 0.00 0.00 7.99 4.76 8.72 14.53 0.00 0.00 0.00 3.23 0.00 12.93 27 E8a_E9a KnownJunction 0 0.00 9.14 9.73 2.06 8.23 2.38 3.97 11.09 14.06 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75.69 25.69 68.39 3.09 0.00 3.33 28 ER8a ExonRegion 0 0.00 23.77 21.47 3.85 11.99 1.52 15.57 16.03 27.17 9.18 0.00 0.00 0.00 0.06 0.00 0.00 0.00 84.04 19.99 89.14 20.67 15.45 16.00 29 I8_AR2 ActiveIntronRegion 0 1.29 13.99 9.86 5.40 4.08 4.19 16.39 13.35 22.09 9.18 0.00 2.89 5.19 1.45 5.01 3.08 5.66 38.47 16.19 27.76 30.72 23.09 79.18 30 I8_SR3 SilentIntronRegion 0 4.09 12.44 13.08 8.13 6.13 3.15 14.83 16.68 24.87 6.27 0.79 5.70 2.50 1.17 3.15 1.75 3.31 31.05 16.95 36.90 7.67 2.03 13.75 31 I8 Intron 0 3.11 11.68 11.98 10.30 7.21 3.84 14.01 19.13 32.21 8.09 0.27 3.44 2.22 1.18 2.55 3.64 3.63 38.84 17.17 36.60 8.88 2.41 14.06 32 I8_SR1 SilentIntronRegion 0 3.77 12.33 11.57 10.42 8.68 3.83 16.05 17.40 27.11 8.53 0.24 4.34 2.40 1.12 2.82 3.48 3.63 39.13 17.97 39.13 7.86 2.12 16.02 33 I8_SR3 SilentIntronRegion 0 2.32 9.14 15.77 12.44 2.93 3.51 10.40 27.02 54.59 9.33 0.35 2.02 1.84 1.83 2.52 4.61 2.52 51.22 15.50 38.38 10.57 1.72 13.09 34 ER9a ExonRegion 0 2.07 18.71 14.98 5.09 5.65 3.99 8.33 17.98 33.10 10.53 0.47 0.00 0.00 1.48 0.00 0.33 0.07 87.71 24.70 105.44 7.98 2.59 6.07 35 E9a_E10a KnownJunction 0 2.89 25.06 12.21 13.35 7.13 5.68 12.37 31.67 67.71 22.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.93 12.99 144.77 11.37 0.00 3.76 36 I9_AR2 ActiveIntronRegion 0 2.08 0.40 3.65 1.12 1.12 0.58 1.16 1.40 1.93 2.32 6.36 1.72 0.38 2.40 2.26 13.52 0.66 5.22 1.80 2.21 83.13 21.24 41.16 37 ER10a ExonRegion 0 8.87 45.19 36.68 21.10 10.16 18.34 23.53 40.79 82.47 30.31 55.51 24.57 7.21 27.49 24.20 50.32 40.49 140.36 61.87 159.69 330.56 106.43 212.88 38 E10a_E11a KnownJunction 0 6.15 58.81 70.22 12.12 16.38 14.76 34.76 37.54 81.77 36.00 47.33 5.85 14.77 25.96 23.36 31.02 82.47 136.22 56.00 172.26 395.50 152.84 251.39 39 I10_AR3 ActiveIntronRegion 0 10.22 17.18 13.19 14.26 7.09 18.84 13.35 19.80 24.92 9.56 1.17 6.32 7.42 1.07 4.75 11.37 11.64 30.78 18.17 24.60 19.13 6.07 66.76 40 I10_AR1 ActiveIntronRegion 0 11.78 11.36 6.46 4.90 5.63 23.14 11.72 7.63 21.70 9.06 4.26 1.61 2.48 2.68 2.40 11.18 5.96 25.94 9.97 27.55 27.71 8.78 65.42 41 I10_AR3 ActiveIntronRegion 0 2.12 10.17 5.51 8.18 2.68 29.34 9.49 12.96 21.41 4.59 1.93 4.33 0.00 1.62 2.90 11.89 0.00 28.95 7.96 14.18 24.24 2.08 34.26 42 I10_AR4 ActiveIntronRegion 0 1.84 7.52 4.53 12.68 0.12 29.66 13.07 13.08 14.71 4.14 3.70 3.39 0.00 1.62 2.90 10.21 0.00 31.01 12.19 13.51 29.03 3.99 41.88 43 I10_AR5 ActiveIntronRegion 0 6.25 10.17 6.91 10.41 6.14 32.71 10.46 21.06 21.18 9.58 5.35 5.00 2.75 2.42 0.81 4.95 6.74 47.19 7.15 27.29 33.96 8.90 56.10 44 I10_AR7 ActiveIntronRegion 0 10.58 14.82 3.68 4.09 2.29 22.27 1.32 12.10 12.53 4.59 2.49 0.00 4.02 0.00 4.14 9.77 3.30 27.72 5.46 21.28 30.54 14.88 13.84 45 I10_AR8 ActiveIntronRegion 0 10.58 14.24 3.06 3.92 2.68 21.55 1.32 11.02 11.42 3.44 1.93 0.00 4.69 0.00 2.18 10.40 3.30 26.10 6.37 25.53 32.50 17.71 16.89 46 ER11a ExonRegion 1 5.92 39.85 47.23 18.40 8.83 55.67 42.99 56.98 110.72 47.18 74.42 42.65 14.03 51.22 30.54 45.03 82.17 215.98 101.96 145.61 479.35 140.71 279.83 47 E11_Da NovelBoundary 0 3.78 19.40 29.45 21.04 4.33 25.67 18.55 35.24 38.14 7.92 0.00 6.30 12.99 2.47 5.19 0.00 4.21 57.95 9.60 48.32 25.64 0.00 18.44 48 E11a_E12a KnownJunction 0 0.00 3.35 17.65 22.18 0.00 20.56 26.98 14.87 27.69 39.43 75.28 42.76 38.80 47.44 37.09 53.06 65.45 99.53 95.34 17.96 536.54 251.30 314.73 49 E11a_E13a KnownJunction 0 0.00 15.13 31.28 13.48 7.30 2.61 14.13 42.14 76.45 16.98 0.00 0.00 0.00 0.00 0.00 0.00 3.83 93.73 21.46 82.07 10.75 8.27 4.35 50 I11 Intron 0 4.03 22.82 15.92 7.26 6.65 13.36 12.44 21.16 21.61 9.71 0.67 1.82 2.78 1.63 3.94 7.95 4.73 47.66 14.34 46.00 22.43 5.21 26.99 51 I11_AR1 ActiveIntronRegion 0 5.59 38.95 24.18 12.44 6.06 11.57 12.53 43.27 38.97 17.69 1.61 0.00 0.00 1.93 6.32 22.19 7.10 67.52 22.16 58.63 30.09 5.55 48.53 52 I11_SR1 SilentIntronRegion 0 3.96 22.11 15.56 7.03 6.68 13.45 12.44 20.18 20.84 9.36 0.63 1.90 2.91 1.62 3.83 7.32 4.62 46.80 13.99 45.47 22.10 5.20 26.04 53 ER12a ExonRegion 0 7.74 8.88 21.01 15.17 4.01 12.16 10.47 18.00 26.48 29.75 57.11 28.24 20.21 46.60 29.91 53.04 65.23 89.77 66.48 37.69 376.15 167.08 225.35 54 E12a_E13a KnownJunction 0 25.12 3.16 22.21 21.71 6.79 5.56 1.72 29.53 23.73 25.92 71.70 40.51 39.28 49.03 20.27 82.03 83.50 104.50 72.57 21.86 382.40 213.28 250.11 55 I12 Intron 0 3.29 22.15 11.62 3.98 4.66 10.13 11.36 15.72 26.08 10.20 4.31 4.43 7.18 5.79 3.44 7.70 8.35 64.41 17.62 54.83 41.21 14.51 31.46 56 I12_SR1 SilentIntronRegion 0 4.69 16.79 13.33 3.77 4.63 12.45 11.83 15.66 25.61 8.99 4.81 5.02 4.74 5.17 2.52 6.37 7.10 61.78 15.90 54.81 36.15 14.70 33.61 57 I12_AR1 ActiveIntronRegion 0 8.03 35.42 24.66 13.40 5.35 30.26 28.63 37.31 64.53 16.30 7.09 21.47 17.20 10.35 6.89 5.94 5.78 117.41 27.74 111.79 63.36 9.03 46.50 58 I12_AR2 ActiveIntronRegion 0 10.07 26.41 25.35 10.11 12.42 14.38 19.01 37.32 58.37 16.44 9.42 10.98 38.15 9.22 9.28 15.03 14.18 99.35 33.74 125.64 62.93 23.98 56.11 59 I12_SR2 SilentIntronRegion 0 2.21 23.62 9.82 3.49 4.04 8.82 10.46 13.86 23.38 10.09 3.70 3.57 5.49 5.70 3.27 7.60 8.34 62.18 16.88 48.76 41.12 13.73 28.63 60 ER13a ExonRegion 0 20.73 52.86 31.11 29.60 15.26 21.17 41.05 71.06 136.34 54.97 73.17 43.22 30.45 71.41 28.74 60.58 91.42 183.95 111.87 175.55 540.71 248.50 320.14 61 E13a_E14a KnownJunction 0 17.34 45.65 35.75 29.37 23.09 36.34 45.84 75.12 134.49 56.11 98.97 42.46 12.66 72.87 22.75 84.34 95.09 254.94 152.29 149.57 543.95 362.62 375.85 62 I13_AR1 ActiveIntronRegion 0 7.46 3.41 3.68 3.75 2.24 7.08 4.00 9.51 7.41 1.72 1.30 7.43 17.59 1.96 1.78 1.00 6.09 11.55 6.41 18.20 38.79 5.94 25.62 63 ER14a ExonRegion 0 11.32 39.46 41.67 26.90 25.36 38.38 32.44 84.41 154.55 63.36 97.39 41.68 46.26 69.65 27.48 88.04 104.53 317.75 133.63 165.38 621.25 313.91 364.71 64 E14a_E15a KnownJunction 0 25.78 67.16 59.76 23.64 42.11 30.32 51.41 66.09 183.27 49.45 90.50 44.86 32.30 85.70 49.94 132.70 132.77 370.01 109.46 196.74 644.40 349.03 541.46 65 E15_Aa NovelBoundary 1 3.70 18.15 5.17 1.86 8.66 19.65 7.60 7.31 8.01 9.91 4.21 5.85 27.27 0.00 4.45 4.36 9.07 11.03 13.93 14.76 19.09 16.90 32.69 66 ER15a ExonRegion 0 16.09 41.61 67.20 28.13 15.79 22.59 34.77 77.37 169.43 58.24 90.61 59.75 72.88 84.97 31.97 91.01 83.45 347.01 121.17 190.25 599.45 308.90 424.34 67 E15_Da NovelBoundary 0 11.04 12.04 17.39 7.36 0.00 35.72 16.61 30.48 20.37 7.36 7.16 0.00 6.82 2.47 9.64 6.84 36.56 18.53 4.80 30.94 68.14 14.94 39.27 68 E15a_E16a KnownJunction 0 21.49 45.32 79.24 32.33 19.86 37.31 30.96 96.15 168.29 65.65 96.39 48.47 66.55 72.05 32.39 59.98 57.32 313.26 112.94 171.17 544.75 355.77 386.27 69 I15 Intron 0 9.26 31.59 23.54 21.62 49.95 104.68 26.27 77.01 86.08 29.91 3.21 6.16 6.85 4.95 5.94 8.48 11.66 27.55 37.56 42.61 29.17 12.58 31.19 70 I15_AR1 ActiveIntronRegion 0 3.06 6.73 6.85 4.80 4.73 19.59 8.13 13.67 22.05 5.76 3.74 2.53 5.12 5.54 3.22 5.00 13.59 18.31 10.24 20.68 39.15 9.88 33.19 71 I15_SR2 SilentIntronRegion 0 5.57 13.87 8.43 4.83 11.26 25.63 12.59 31.55 27.70 9.22 2.87 7.15 6.07 4.65 3.66 12.13 9.60 20.23 14.18 24.14 25.14 14.56 31.40 72 I15_AR2 ActiveIntronRegion 0 22.37 60.92 57.82 64.49 134.65 292.52 60.72 196.20 212.74 76.52 3.66 11.88 11.68 6.85 10.22 13.60 14.32 57.08 72.23 79.22 41.19 17.91 42.65 73 I15_SR3 SilentIntronRegion 0 10.68 54.42 33.12 27.68 78.05 146.48 35.18 107.83 126.08 44.27 2.69 4.98 6.61 3.60 8.20 4.87 11.08 25.92 65.10 59.35 18.20 10.46 23.23 74 E16_Aa NovelBoundary 0 27.71 99.52 69.28 31.33 122.33 133.73 56.35 197.11 208.39 99.66 9.05 7.65 0.00 0.00 5.19 12.56 22.63 55.67 59.58 83.92 32.62 27.37 72.05 75 ER16a ExonRegion 0 14.25 59.02 57.84 28.15 65.91 143.95 50.11 145.64 211.78 77.99 111.21 53.90 68.67 79.64 24.32 67.84 97.79 300.63 116.27 185.11 557.67 211.36 304.95 76 E16_Da NovelBoundary 0 33.64 76.70 81.55 33.93 69.10 250.94 21.73 161.91 214.61 84.72 0.00 12.15 13.47 0.00 8.90 3.67 7.76 76.81 68.80 94.79 16.56 19.96 42.51 77 E16a_E17a KnownJunction 0 12.97 68.80 33.94 14.52 10.19 26.41 24.29 47.60 131.45 37.02 79.49 51.62 72.56 62.22 26.21 87.75 60.96 287.69 63.44 78.11 428.73 125.47 191.13 78 I16 Intron 0 5.10 30.06 26.23 19.45 59.92 145.60 35.44 99.42 142.20 54.79 2.30 6.30 8.75 4.23 4.99 7.60 15.80 42.42 70.76 66.37 20.96 13.20 28.99 79 I16_SR1 SilentIntronRegion 0 5.10 30.09 26.26 19.47 59.98 145.77 35.48 99.54 142.36 54.86 2.30 6.31 8.76 4.23 4.99 7.61 15.82 42.47 70.85 66.45 20.99 13.21 29.03 80 E17_Aa NovelBoundary 0 3.70 14.54 12.77 8.49 26.15 111.98 22.74 59.64 92.16 48.92 2.37 7.35 14.28 7.12 0.00 8.72 9.07 31.30 55.63 63.73 5.56 11.57 8.45 81 ER17a ExonRegion 0 12.23 49.45 50.46 27.35 30.91 91.52 41.74 101.65 199.02 81.52 79.35 41.66 38.23 73.35 25.82 74.75 82.65 312.42 126.40 164.79 519.32 206.81 293.98 82 E17_Da KnownBoundary 0 0.00 65.71 31.19 16.35 35.14 84.33 28.26 36.68 78.59 34.09 35.59 30.91 12.01 68.46 37.70 35.12 43.48 118.47 86.87 106.93 240.87 97.12 182.51 83 ER17b ExonRegion 0 27.81 108.29 48.62 36.17 68.33 119.02 80.76 123.41 203.38 87.69 63.21 44.14 41.65 59.12 27.52 66.51 67.18 224.96 120.85 172.98 439.06 269.00 286.27 84 E17_Db KnownBoundary 1 14.22 82.35 65.23 58.60 50.17 77.74 69.78 200.89 277.05 83.22 31.27 214.42 150.15 48.27 34.49 109.37 51.99 481.94 172.52 203.26 321.06 1036.81 865.92 85 ER17c ExonRegion 0 86.74 269.33 170.78 105.82 166.65 177.45 150.15 207.63 249.36 126.25 55.04 56.79 45.30 49.57 23.02 65.52 66.62 308.31 176.91 210.36 515.45 397.47 410.68 86 ER17d ExonRegion 0 7.41 6.10 3.06 2.73 18.73 5.50 10.59 0.00 0.62 1.72 0.00 0.00 0.00 1.62 0.00 0.00 0.00 3.70 6.37 1.06 0.00 2.08 4.40 87 IG3 Intergenic 0 2.08 13.21 17.02 9.64 21.39 50.02 19.24 39.20 57.68 26.82 0.66 1.07 2.02 0.50 2.99 1.14 3.39 32.20 48.76 59.76 2.73 2.67 5.02 88 IG3_SR2 SilentIntergenicRegion 0 2.09 19.39 22.23 7.35 30.81 41.63 23.96 44.07 73.88 26.43 0.00 2.35 3.81 0.44 1.35 0.98 5.43 14.82 54.52 58.11 4.35 2.06 4.83 89 IG3_AR2 ActiveIntergenicRegion 0 1.78 13.61 17.21 11.49 18.18 52.00 21.02 40.25 58.36 29.15 0.62 1.10 0.62 0.32 3.62 0.67 3.29 33.34 53.31 66.25 1.90 3.22 5.07 90 IG3_SR1 SilentIntergenicRegion 0 5.78 8.89 21.05 9.37 32.74 60.69 17.04 48.12 53.00 25.88 1.92 0.25 1.60 0.55 4.08 3.14 2.50 38.77 42.24 58.81 4.77 4.30 6.47 91 IG3_AR1 ActiveIntergenicRegion 0 1.16 10.88 12.05 6.90 18.60 45.83 13.73 30.51 49.63 22.34 0.57 0.65 4.37 0.90 2.03 1.43 2.90 36.59 38.49 46.84 2.85 1.09 4.43