Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NEURL Gene 0 3.31 32.32 85.60 28.69 33.45 81.53 33.47 114.10 111.83 76.36 0.36 0.07 0.66 0.64 4.65 1.59 4.07 88.45 116.22 94.49 3.13 3.00 4.50 2 369780 Transcript 0 0.00 1.05 7.94 1.25 0.54 7.48 11.38 39.94 43.96 16.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.14 49.13 50.54 0.00 0.00 0.00 3 437579 Transcript 0 0.00 3.29 17.63 5.06 2.33 14.89 9.43 22.57 18.61 18.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.17 38.20 17.16 0.00 0.00 0.00 4 369777 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 455386 Transcript 0 0.00 0.00 0.57 0.00 0.00 0.57 1.23 0.80 2.00 1.16 0.00 0.55 0.60 0.21 2.55 0.00 0.00 1.91 0.99 1.67 0.00 0.00 0.00 6 465048 Transcript 0 0.00 0.52 1.39 0.52 0.91 2.33 2.47 2.18 3.90 3.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 2.43 6.13 0.00 0.00 0.50 7 ER1a ExonRegion 0 0.00 2.10 5.62 0.53 1.09 6.85 4.39 20.60 27.27 8.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.77 45.65 29.37 0.00 0.00 0.00 8 E1a_E4a KnownJunction 0 0.00 0.00 10.26 1.96 0.00 8.12 18.37 59.27 60.65 23.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 88.50 52.61 71.72 0.00 0.00 0.00 9 ER2a ExonRegion 0 0.00 3.29 17.63 5.06 2.33 14.89 9.43 22.57 18.61 18.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.17 38.20 17.16 0.00 0.00 0.00 10 E2_Ab KnownBoundary 0 0.00 3.03 65.43 10.79 4.33 12.89 7.91 78.78 57.49 54.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.67 79.63 14.89 0.00 0.00 0.00 11 ER2b ExonRegion 0 0.00 1.42 52.95 10.41 10.38 6.06 9.67 50.07 50.00 49.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.63 80.50 14.83 0.00 0.00 0.00 12 E2a_E4a KnownJunction 0 0.00 0.00 64.22 15.35 15.28 5.62 16.78 69.66 64.38 58.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.76 116.14 24.03 0.00 0.00 0.00 13 E3_Aa NovelBoundary 0 1931.16 1636.75 2663.80 3254.63 1579.29 985.97 2060.54 3092.14 3109.02 2491.66 481.28 307.60 456.63 318.44 543.05 1636.49 1133.33 4602.44 1659.62 1849.76 891.69 823.77 1615.84 14 ER3a ExonRegion 0 0.00 0.00 1.14 0.00 0.00 1.14 2.46 1.60 4.00 0.73 0.00 1.11 1.20 0.42 5.09 0.00 0.00 2.01 1.98 3.35 0.00 0.00 0.00 15 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 16 ER4a ExonRegion 0 0.65 10.03 96.50 21.93 16.07 36.49 22.54 145.78 120.32 108.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 105.30 174.04 116.96 0.00 0.44 0.62 17 E4_Da NovelBoundary 0 7.04 6.58 26.11 9.16 20.88 40.66 13.29 55.82 55.29 36.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.65 146.26 68.97 0.00 0.00 3.93 18 E4a_E5a KnownJunction 0 3.78 9.60 96.66 27.50 28.01 25.84 13.56 142.53 99.94 96.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 98.74 153.42 93.45 0.00 0.00 0.00 19 I4 Intron 0 0.65 6.60 25.40 8.16 5.38 8.79 11.05 39.01 45.52 27.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.16 48.24 51.62 0.00 0.00 0.00 20 I4_AR1 ActiveIntronRegion 0 0.66 6.64 25.55 8.21 5.40 8.84 11.12 39.25 45.80 27.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.42 48.54 51.94 0.00 0.00 0.00 21 E5_Aa NovelBoundary 0 0.00 6.18 47.25 12.95 15.96 10.90 14.66 54.59 77.83 42.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 91.78 68.99 76.13 0.00 0.00 0.00 22 ER5a ExonRegion 0 2.16 15.97 131.75 30.12 22.78 42.92 36.35 148.63 157.70 123.55 1.50 0.00 0.00 0.00 0.00 0.00 0.00 125.24 177.91 136.58 0.05 0.60 0.00 23 E5_Ab KnownBoundary 0 0.00 15.39 187.66 46.88 32.26 64.05 52.33 211.86 207.75 145.35 4.21 0.00 0.00 0.00 0.00 0.00 0.00 159.80 259.21 194.95 0.00 0.00 0.00 24 ER5b ExonRegion 0 1.18 14.64 183.37 33.01 32.64 59.62 38.92 205.61 228.69 153.61 0.69 0.00 0.00 0.00 0.00 0.00 0.00 142.15 211.37 156.12 2.20 0.00 0.00 25 E5_Da KnownBoundary 0 6.82 21.31 195.29 17.41 28.10 44.75 30.52 196.91 239.00 157.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 163.91 167.91 171.68 0.00 0.00 0.00 26 ER5c ExonRegion 0 0.55 19.38 147.99 21.85 16.96 40.25 23.74 177.96 176.83 130.01 0.35 0.00 0.00 0.00 0.06 0.00 0.00 117.63 133.31 128.45 0.42 0.00 0.00 27 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E5b_E7a KnownJunction 0 0.00 18.88 112.44 19.58 19.44 53.26 20.98 152.22 192.36 155.88 2.58 0.00 0.00 0.00 0.00 0.00 0.00 88.25 118.40 124.13 2.97 0.00 0.00 29 ER6a ExonRegion 0 0.00 1.03 2.78 1.03 1.81 4.66 4.95 4.36 7.80 5.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.69 4.86 12.26 0.00 0.00 1.00 30 I6_AR1 ActiveIntronRegion 0 2.17 20.61 8.81 7.35 9.99 7.28 8.28 13.57 14.86 10.09 0.13 0.24 0.26 0.00 0.40 0.41 0.23 9.31 7.64 21.40 0.91 3.00 1.81 31 I6_AR2 ActiveIntronRegion 0 1.62 17.06 16.25 10.59 25.18 11.89 12.46 19.33 33.00 11.52 0.74 0.00 1.47 0.00 1.30 1.51 0.42 13.67 10.13 21.91 6.17 16.69 15.69 32 E7_Aa NovelBoundary 0 0.00 12.23 16.50 5.56 8.66 2.90 14.79 16.39 31.80 12.57 0.00 0.00 0.00 0.00 4.45 0.00 0.00 19.07 7.91 25.63 8.65 3.06 0.00 33 ER7a ExonRegion 0 2.40 20.79 99.47 22.50 14.29 64.16 19.27 114.60 128.94 98.82 0.76 0.26 0.00 0.74 6.60 2.26 4.29 121.86 108.71 94.20 8.38 4.90 7.59 34 E7_Da NovelBoundary 0 0.00 14.93 23.77 9.86 45.16 31.06 9.94 21.36 14.58 10.80 0.00 0.00 0.00 0.00 4.45 0.00 12.34 21.97 4.42 24.03 8.59 10.96 15.45 35 E7a_E8a KnownJunction 0 6.67 42.16 238.70 82.84 44.23 107.72 74.77 262.01 235.36 210.89 2.42 0.00 0.00 2.41 18.17 3.93 4.77 260.04 224.01 150.97 5.62 2.39 0.00 36 I7 Intron 0 3.88 19.39 14.02 16.29 27.22 26.52 22.90 29.34 32.78 11.81 0.33 2.38 3.60 0.99 2.26 2.22 4.37 17.31 16.10 26.82 6.35 20.22 12.15 37 I7_AR1 ActiveIntronRegion 0 0.66 13.72 20.06 20.71 13.44 30.50 17.66 28.29 30.04 9.39 0.00 0.56 0.52 0.63 4.23 0.93 3.63 25.50 15.00 21.70 4.15 13.73 12.44 38 I7_SR1 SilentIntronRegion 0 5.41 23.91 15.43 18.36 34.80 28.47 28.06 31.98 37.20 12.88 0.44 3.55 5.41 1.18 2.25 2.73 5.08 14.97 17.84 29.34 7.65 27.10 13.85 39 I7_SR2 SilentIntronRegion 0 1.28 9.21 5.88 7.15 12.92 18.08 10.52 22.02 21.10 10.14 0.19 0.00 0.00 0.63 1.06 1.49 2.66 19.32 11.53 22.47 3.77 3.35 6.79 40 E8_Aa NovelBoundary 0 0.00 5.79 14.87 7.49 4.33 19.87 16.74 18.98 17.74 7.33 0.00 0.00 0.00 2.35 0.00 0.00 0.00 26.65 15.44 10.93 4.94 5.94 3.67 41 ER8a ExonRegion 0 2.87 37.43 153.05 47.84 37.53 110.13 32.73 193.41 174.76 135.79 2.10 0.00 7.50 1.73 27.22 2.97 10.06 221.49 220.35 154.04 9.04 5.90 5.69 42 E8a_E9a KnownJunction 0 3.26 51.24 225.13 71.19 39.81 153.21 67.75 330.03 254.51 219.46 2.05 0.00 12.66 2.30 35.60 7.95 8.32 277.36 443.31 193.22 2.84 8.63 4.35 43 I8 Intron 0 0.68 4.60 6.50 4.82 6.06 16.22 7.57 16.94 11.51 6.08 1.04 0.00 1.67 0.72 1.10 0.64 1.07 23.77 10.65 18.35 3.33 2.47 7.92 44 I8_SR1 SilentIntronRegion 0 0.69 4.62 6.52 4.84 6.08 16.29 7.60 17.01 11.56 6.11 1.05 0.00 1.67 0.72 1.11 0.64 1.07 23.86 10.69 18.43 3.34 2.48 7.95 45 ER9a ExonRegion 0 5.66 54.05 105.68 42.90 56.93 129.60 52.14 145.99 138.17 87.64 0.25 0.00 0.81 0.97 5.65 2.43 6.52 98.20 140.56 118.63 3.41 4.31 6.53 46 IG3 Intergenic 0 2.08 13.21 17.02 9.64 21.39 50.02 19.24 39.20 57.68 26.82 0.66 1.07 2.02 0.50 2.99 1.14 3.39 32.20 48.76 59.76 2.73 2.67 5.02 47 IG3_AR1 ActiveIntergenicRegion 0 1.16 10.88 12.05 6.90 18.60 45.83 13.73 30.51 49.63 22.34 0.57 0.65 4.37 0.90 2.03 1.43 2.90 36.59 38.49 46.84 2.85 1.09 4.43 48 IG3_SR1 SilentIntergenicRegion 0 5.78 8.89 21.05 9.37 32.74 60.69 17.04 48.12 53.00 25.88 1.92 0.25 1.60 0.55 4.08 3.14 2.50 38.77 42.24 58.81 4.77 4.30 6.47 49 IG3_AR2 ActiveIntergenicRegion 0 1.78 13.61 17.21 11.49 18.18 52.00 21.02 40.25 58.36 29.15 0.62 1.10 0.62 0.32 3.62 0.67 3.29 33.34 53.31 66.25 1.90 3.22 5.07 50 IG3_SR2 SilentIntergenicRegion 0 2.09 19.39 22.23 7.35 30.81 41.63 23.96 44.07 73.88 26.43 0.00 2.35 3.81 0.44 1.35 0.98 5.43 14.82 54.52 58.11 4.35 2.06 4.83