Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SUFU Gene 0 24.92 30.58 39.31 23.52 26.96 52.52 25.27 32.95 38.04 28.76 37.59 12.39 13.36 38.96 38.34 29.28 27.00 77.13 51.66 35.72 125.51 59.75 68.46 2 369902 Transcript 0 0.38 1.12 0.56 0.08 0.29 1.71 0.75 0.19 0.00 0.37 3.91 0.00 0.00 0.76 1.93 2.19 4.64 0.22 0.76 1.01 7.61 3.13 6.03 3 369900 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 393286 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 369899 Transcript 0 3.81 1.57 1.76 1.43 1.03 2.24 1.28 3.47 4.66 1.54 4.19 2.33 7.42 11.18 6.77 7.54 5.03 4.31 3.07 6.15 7.79 1.87 3.41 6 423559 Transcript 0 12.32 8.33 7.73 5.42 5.27 6.25 10.35 5.00 6.90 5.41 3.01 2.55 2.95 5.59 6.95 4.67 5.02 15.50 9.45 13.85 20.03 6.20 15.19 7 441466 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 471000 Transcript 0 2.74 1.98 2.56 1.98 2.31 0.20 2.57 1.39 1.75 0.56 0.43 0.47 2.18 0.30 1.11 0.64 1.43 1.44 1.72 1.84 4.04 0.00 2.86 9 ER1a ExonRegion 0 0.00 1.84 0.00 0.00 0.13 1.83 0.50 0.00 0.00 0.00 7.82 0.00 0.00 1.39 3.87 4.39 9.27 0.44 1.52 1.82 15.11 6.25 8.67 10 ER1b ExonRegion 0 0.00 2.34 2.30 0.00 3.64 7.59 2.67 0.00 0.00 0.30 8.54 5.05 5.47 4.40 6.97 4.13 18.20 5.00 11.95 6.91 33.06 5.56 8.85 11 E1_Ac KnownBoundary 0 0.00 0.00 7.45 0.00 0.00 2.56 0.00 1.56 2.58 4.41 7.74 0.00 0.00 5.12 0.00 7.69 0.00 6.76 4.80 0.00 0.00 0.00 4.35 12 ER1c ExonRegion 0 2.31 6.64 5.21 2.14 2.14 7.26 3.36 3.65 9.08 4.16 18.42 4.11 3.26 24.76 18.10 7.56 16.25 20.23 18.77 13.45 45.08 8.39 17.24 13 E1a_E2a KnownJunction 0 13.93 12.89 15.05 8.79 6.54 28.17 19.61 23.49 33.80 23.88 25.64 5.70 7.47 62.04 52.78 34.86 31.23 81.54 42.35 38.99 125.53 32.51 53.01 14 ER2a ExonRegion 0 14.60 17.88 24.45 7.59 12.86 23.89 21.30 19.88 36.88 24.36 56.54 13.50 9.14 68.39 43.80 29.02 40.71 82.30 45.00 52.83 153.21 41.45 55.95 15 E2_Da NovelBoundary 0 11.19 15.85 7.98 6.09 3.99 5.05 0.00 1.85 5.96 0.00 7.21 0.00 0.00 2.77 4.45 4.36 0.00 3.73 4.42 5.56 0.00 0.00 0.00 16 E2a_E3a KnownJunction 0 14.67 15.98 32.61 19.54 4.33 29.19 15.24 27.27 45.57 35.78 47.33 11.70 6.33 74.81 48.71 47.08 61.62 113.29 80.28 40.84 177.67 72.44 66.50 17 I2_AR1 ActiveIntronRegion 0 7.32 5.73 7.64 7.50 11.85 6.83 13.69 8.49 6.78 3.19 9.03 6.21 18.31 12.19 13.69 8.43 5.60 3.88 9.42 8.48 2.01 5.83 8.23 18 I2_AR2 ActiveIntronRegion 0 11.16 3.00 8.10 6.23 0.00 4.00 5.72 11.39 5.02 7.35 1.71 7.48 0.75 1.59 5.08 5.94 2.70 11.84 4.34 10.73 2.40 2.23 9.48 19 I2_AR3 ActiveIntronRegion 1 5.87 6.19 11.20 6.26 0.49 4.50 6.32 7.23 7.02 9.33 1.85 7.48 0.00 2.88 14.11 2.97 2.10 6.22 5.21 24.95 6.21 3.88 3.74 20 I2_AR4 ActiveIntronRegion 0 12.46 6.95 17.08 8.42 8.66 6.90 10.83 16.05 8.95 7.54 3.50 5.49 5.29 1.87 9.21 7.77 4.52 16.44 3.85 16.29 6.05 2.57 8.04 21 ER3a ExonRegion 0 6.61 16.76 26.50 20.89 13.77 35.58 16.73 34.29 39.65 39.73 83.65 10.24 14.48 71.89 62.60 45.62 62.91 118.20 69.15 65.43 172.44 67.19 80.34 22 E3_Da NovelBoundary 0 0.00 6.45 15.61 0.00 19.44 5.79 10.47 9.78 7.06 1.40 5.16 6.30 0.00 4.77 6.30 0.00 11.87 24.66 0.00 12.14 9.20 0.00 10.50 23 E3a_E5a KnownJunction 0 3.56 15.06 30.60 26.70 16.81 46.56 13.78 20.29 24.36 33.85 78.34 18.46 6.33 102.77 65.15 55.54 67.32 103.76 72.76 54.33 167.42 64.11 65.13 24 I3_AR1 ActiveIntronRegion 0 9.98 13.41 7.56 13.08 19.67 6.39 19.59 11.29 8.81 6.48 1.82 1.34 3.88 1.48 4.61 6.16 4.14 10.29 3.54 10.58 7.54 1.11 8.28 25 I3_SR2 SilentIntronRegion 0 10.95 10.64 10.85 11.50 8.27 4.78 12.17 8.12 7.75 3.60 0.96 1.24 2.55 0.94 5.40 8.77 3.53 11.42 4.73 7.65 10.45 1.35 9.45 26 I3_AR2 ActiveIntronRegion 0 16.04 14.30 13.15 17.65 14.23 6.42 15.03 8.27 10.02 9.76 0.41 0.94 3.70 1.15 8.20 15.70 8.98 13.94 5.16 9.86 12.74 2.97 16.36 27 I3_AR3 ActiveIntronRegion 0 19.67 16.56 20.04 11.51 17.14 9.77 13.98 14.93 12.23 9.59 1.26 1.00 5.61 0.80 8.01 10.58 5.95 21.59 12.19 12.38 16.91 3.28 22.29 28 ER4a ExonRegion 0 5.49 3.96 5.13 3.95 4.63 0.40 5.14 2.78 2.08 1.12 0.85 0.94 4.35 0.60 2.21 1.28 2.85 2.87 3.44 3.68 8.09 0.00 5.71 29 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER5a ExonRegion 0 11.16 21.09 33.71 23.38 21.61 46.18 34.74 41.49 42.14 41.30 71.15 21.44 10.40 79.54 63.22 57.09 65.53 111.25 59.90 54.99 164.66 90.71 119.19 31 E5a_E6a KnownJunction 0 6.82 28.28 35.45 19.11 11.97 51.50 40.76 23.08 36.23 39.14 71.76 13.20 6.17 66.69 60.57 40.50 45.16 85.39 72.57 73.95 145.55 77.22 66.50 32 ER6a ExonRegion 0 12.85 14.12 36.38 19.48 11.85 54.08 23.92 43.51 44.13 35.37 75.81 13.54 16.31 68.78 57.32 42.40 43.10 112.73 56.37 56.16 161.59 84.50 70.68 33 E6a_E7a KnownJunction 0 13.85 12.89 27.20 20.34 12.05 57.81 31.44 29.49 53.67 34.01 72.54 12.30 6.82 49.39 72.56 39.82 49.18 113.17 44.80 35.67 172.91 80.95 99.62 34 ER7a ExonRegion 0 17.05 21.03 21.60 16.39 12.98 39.92 27.01 22.35 37.98 31.97 70.27 8.66 11.44 63.99 57.87 43.08 42.01 141.44 42.37 43.25 148.86 80.09 100.45 35 E7a_E8a KnownJunction 0 10.30 9.93 26.29 15.55 18.93 48.49 26.63 32.41 41.23 27.21 55.33 24.46 13.64 54.27 18.42 29.14 53.11 148.98 44.05 44.81 114.29 91.61 59.50 36 ER8a ExonRegion 0 13.54 15.49 29.95 15.89 17.72 50.54 25.23 26.48 40.66 32.23 59.03 8.46 15.47 60.16 44.52 39.12 33.42 116.29 44.39 43.67 175.08 67.40 72.96 37 E8a_E9a KnownJunction 0 12.30 26.84 29.27 8.86 23.60 88.19 33.52 42.88 47.57 31.40 73.65 12.60 13.15 72.28 65.52 39.73 35.34 153.46 47.53 59.25 183.79 63.07 79.30 38 ER9a ExonRegion 0 16.09 24.68 30.58 16.39 14.95 53.91 32.45 30.02 41.87 32.13 49.87 31.91 14.96 91.71 79.30 43.48 35.92 130.41 82.33 50.70 187.53 90.98 106.22 39 E9b_E10a KnownJunction 0 18.30 29.47 21.35 21.54 8.32 47.47 18.46 25.26 26.79 25.01 33.11 0.00 13.64 41.14 54.27 18.71 34.97 62.64 46.97 29.15 154.69 46.84 61.80 40 ER9b ExonRegion 0 14.82 28.47 20.83 19.08 10.70 49.51 25.16 20.74 39.52 24.08 32.86 0.00 14.07 40.60 52.22 26.75 26.41 66.52 54.15 25.53 174.09 50.00 55.80 41 I9_AR1 ActiveIntronRegion 0 4.31 2.13 0.00 0.93 0.00 0.00 9.07 2.69 5.39 1.64 1.12 0.00 2.24 0.78 2.47 1.93 5.44 13.88 3.87 3.12 11.07 2.23 22.79 42 ER10a ExonRegion 0 18.80 21.63 40.41 19.07 34.49 66.32 28.66 37.26 44.41 29.70 62.47 18.02 24.21 75.02 65.50 45.18 35.58 124.54 66.87 52.80 193.84 66.89 99.08 43 E10_Da NovelBoundary 0 21.49 0.00 0.00 5.23 0.00 5.79 6.05 2.09 3.36 3.33 0.00 0.00 0.00 0.00 4.33 0.00 4.58 5.14 0.00 3.26 12.11 2.33 11.69 44 E10a_E11a KnownJunction 0 40.16 21.11 54.61 27.27 46.26 67.29 41.56 47.65 57.06 34.17 54.28 36.91 40.58 125.67 146.49 48.02 61.90 148.28 84.14 70.50 235.99 106.97 138.37 45 ER11a ExonRegion 0 26.83 25.54 42.05 29.37 24.95 65.15 34.05 40.21 55.47 34.70 70.91 40.21 36.04 71.65 67.13 54.35 48.75 137.84 74.18 48.35 179.72 77.87 104.60 46 E11_Da KnownBoundary 0 11.34 9.01 12.12 2.06 7.13 9.09 10.78 3.74 7.70 2.77 2.58 0.00 6.82 5.00 13.72 8.72 4.21 21.85 13.46 6.14 8.46 2.33 45.84 47 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 4.53 0.00 6.66 16.66 4.45 8.29 4.02 0.00 0.00 0.00 0.00 0.00 0.00 48 E11a_E13a KnownJunction 0 32.60 17.56 35.42 17.45 24.62 67.52 36.13 29.04 34.84 34.33 48.70 31.06 26.13 57.80 15.45 31.70 61.34 71.05 51.01 30.94 160.62 47.76 127.36 49 ER11b ExonRegion 0 12.32 8.33 7.73 5.42 5.27 6.25 10.35 5.00 6.90 5.41 3.01 2.55 2.95 5.59 6.95 4.67 5.02 15.50 9.45 13.85 20.03 6.20 15.19 50 E11_Db NovelBoundary 0 30.52 15.19 5.68 3.50 8.66 0.00 10.16 7.76 11.63 6.34 2.68 0.00 7.79 7.42 10.38 0.00 0.00 8.79 41.04 6.33 9.33 12.37 15.19 51 E12_Aa NovelBoundary 0 10.59 0.00 14.04 9.32 4.33 0.00 6.09 7.23 25.49 8.52 0.00 5.70 6.82 2.47 5.56 3.67 4.77 12.73 3.95 23.46 22.18 5.76 24.50 52 ER12a ExonRegion 0 7.61 3.13 3.52 2.87 2.06 4.48 2.55 6.95 7.99 3.07 3.85 4.66 8.18 5.71 9.08 6.79 6.04 8.62 6.13 12.30 15.57 3.75 6.81 53 E12_Da NovelBoundary 0 0.00 3.16 1.45 0.00 8.23 0.00 3.97 18.98 13.63 10.80 2.11 0.00 0.00 0.00 4.45 0.00 3.46 12.81 8.85 10.67 20.57 5.63 8.71 54 I12_SR1 SilentIntronRegion 0 6.00 6.56 6.30 6.08 4.05 6.27 4.90 5.94 8.72 5.45 1.53 0.74 1.12 2.87 5.86 3.56 2.38 15.76 8.47 8.58 15.87 4.70 13.09 55 I12_AR1 ActiveIntronRegion 0 2.82 9.41 5.33 6.24 6.76 3.29 8.06 8.00 8.49 7.70 1.26 2.00 0.60 2.00 4.17 4.34 3.34 15.54 4.98 7.67 15.31 6.92 7.64 56 E13_Aa NovelBoundary 0 3.33 14.47 4.23 0.00 0.00 7.55 18.15 8.71 12.99 7.76 2.32 0.00 0.00 2.41 4.45 11.79 3.65 10.07 0.00 11.57 25.88 0.00 19.55 57 ER13a ExonRegion 0 20.18 26.47 30.72 17.56 33.23 76.54 37.86 41.43 49.60 44.65 81.24 12.99 10.06 84.81 42.43 51.39 52.48 88.10 82.50 37.93 193.77 96.63 127.34 58 E13a_E14a KnownJunction 0 19.86 25.85 40.03 20.51 18.51 124.76 34.98 54.05 58.85 49.24 103.29 17.41 21.91 81.58 45.00 26.23 40.95 122.87 67.58 38.29 206.15 98.52 114.05 59 E14_Aa NovelBoundary 0 14.00 2.83 1.60 0.00 0.00 5.28 2.16 0.00 4.37 1.67 0.00 0.00 0.00 2.47 8.90 11.28 4.68 18.53 0.00 6.46 14.89 0.00 4.27 60 ER14a ExonRegion 0 39.14 50.67 64.44 38.36 44.97 85.33 36.75 51.99 57.74 43.59 49.51 16.70 18.49 48.72 51.91 40.37 34.20 107.20 77.05 46.55 179.98 91.66 98.30 61 E14_Da KnownBoundary 0 8.37 0.00 2.19 0.00 6.45 8.69 7.07 1.56 0.00 1.42 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 3.16 62 ER14b ExonRegion 0 0.77 0.39 1.12 0.16 0.45 1.59 0.99 0.37 0.00 0.75 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.21 0.11 0.00 3.40 63 IG34_AR1 ActiveIntergenicRegion 0 3.16 3.59 10.71 2.89 12.79 13.64 6.01 13.79 12.39 6.77 13.46 5.36 2.15 11.63 8.96 9.46 6.09 9.89 29.03 8.88 10.39 8.90 14.31 64 IG34_SR2 SilentIntergenicRegion 0 4.00 1.63 1.50 0.01 2.18 4.53 0.37 2.12 2.59 2.35 5.33 1.93 0.00 4.12 2.89 1.64 5.37 0.20 4.46 1.19 9.79 2.83 3.33 65 IG34_AR2 ActiveIntergenicRegion 0 1.01 2.49 11.17 2.21 3.09 10.19 1.44 11.38 11.74 13.24 12.60 3.17 2.36 21.50 16.65 14.54 13.69 23.74 29.64 15.76 108.41 30.17 53.08