Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KAZALD1 Gene 0 2.71 0.06 1.56 0.28 1.00 1.09 0.84 1.74 2.51 0.28 9.75 2.73 1.54 4.48 5.20 2.83 5.55 1.89 1.58 1.96 41.44 8.53 10.48 2 313664 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 370200 Transcript 0 5.26 0.21 1.73 0.64 1.67 1.34 2.08 2.29 1.61 0.04 8.08 4.72 3.57 6.09 5.94 3.96 9.65 4.01 1.66 0.89 59.99 12.74 18.34 4 477979 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 2.63 4.35 5 470106 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.05 2.57 1.71 6 370199 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 477267 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 3.21 0.00 4.69 7.65 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 17.79 2.27 0.00 8 465807 Transcript 0 1.30 0.00 0.19 0.00 0.00 0.37 0.54 0.53 0.56 0.00 2.56 0.36 0.39 1.50 2.21 0.30 3.14 0.00 0.65 0.22 11.41 1.28 4.49 9 IG48_SR3 SilentIntergenicRegion 0 1.87 2.79 2.22 0.29 4.13 1.51 8.24 1.40 1.12 1.19 5.68 10.82 3.48 10.92 4.24 6.19 2.88 5.10 0.00 11.21 0.44 0.42 1.47 10 IG48_AR4 ActiveIntergenicRegion 0 4.44 4.19 7.64 1.54 4.90 4.80 6.30 3.59 2.77 3.00 13.05 3.93 2.33 16.71 10.02 17.24 9.69 13.35 2.78 10.51 0.43 0.71 1.01 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1b ExonRegion 0 0.52 0.00 1.00 0.42 0.37 1.63 0.47 0.18 3.75 0.23 12.50 5.90 3.44 3.49 4.63 2.37 5.46 2.08 2.12 2.22 10.98 3.49 7.23 13 E1_Ac KnownBoundary 0 3.78 0.00 0.00 0.00 0.00 0.00 1.72 0.00 2.78 0.00 14.32 5.40 0.00 4.53 0.00 7.01 9.16 6.72 4.24 2.75 58.38 20.51 21.34 14 ER1c ExonRegion 0 4.88 0.00 0.00 0.00 0.00 1.33 2.74 3.36 1.84 0.00 15.18 5.46 0.00 7.44 3.53 2.54 11.77 0.00 0.60 2.74 60.17 18.57 33.79 15 E1_Ad KnownBoundary 0 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 17.58 6.30 0.00 2.94 0.00 3.59 0.00 0.00 0.00 0.00 23.29 16.29 38.84 16 ER1d ExonRegion 0 1.97 0.00 0.90 0.00 0.00 0.00 0.03 1.40 2.94 0.00 13.07 4.33 0.00 6.88 3.45 0.71 1.10 3.30 0.00 0.00 26.60 13.54 22.72 17 E1a_E2a KnownJunction 0 3.78 0.00 1.83 0.00 0.00 0.00 0.00 1.93 5.84 0.00 10.00 6.30 0.00 0.00 4.70 0.00 0.00 5.14 0.00 0.00 38.73 17.45 7.43 18 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 2.63 4.35 20 ER2a ExonRegion 0 1.20 0.23 1.15 0.00 0.00 0.63 0.61 2.09 1.95 0.39 6.23 1.75 0.00 2.10 3.05 0.68 2.55 1.83 0.72 2.10 46.58 6.81 6.88 21 E2_Ab KnownBoundary 0 3.78 0.00 3.08 0.00 0.00 0.00 0.00 6.16 3.01 0.00 4.79 6.00 0.00 9.18 0.00 0.00 0.00 6.63 0.00 3.26 48.19 8.63 3.84 22 ER2b ExonRegion 0 1.82 0.00 3.69 0.00 0.00 0.00 0.14 2.01 2.07 0.00 4.96 1.51 0.00 2.31 4.60 0.00 4.48 1.87 2.01 5.94 62.83 9.87 8.30 23 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.11 5.14 3.41 24 E2a_E3b KnownJunction 0 3.78 0.00 4.46 0.00 4.24 0.00 2.08 4.39 0.00 0.00 4.42 0.00 0.00 4.36 10.38 0.00 0.00 0.00 0.00 3.26 39.72 13.04 0.00 25 ER2c ExonRegion 0 1.78 0.00 3.09 0.00 2.35 0.00 1.32 3.11 1.24 0.00 5.72 0.00 0.00 4.29 5.11 0.71 3.30 1.03 5.86 3.32 61.70 8.92 2.11 26 I2_AR1 ActiveIntronRegion 0 0.00 0.00 0.65 0.00 0.00 0.00 2.31 0.00 0.97 0.10 0.33 0.83 0.00 2.76 0.00 0.00 2.88 0.67 0.47 0.27 9.75 1.73 4.69 27 ER3a ExonRegion 0 0.04 0.00 0.07 0.00 0.10 0.00 0.02 0.03 0.02 0.00 3.42 6.26 0.00 5.42 3.83 2.07 1.95 0.03 0.00 1.41 13.66 1.56 3.36 28 E3_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 0.00 3.00 0.00 4.10 4.77 0.00 0.00 3.07 8.46 2.88 0.00 29 E3_Da KnownBoundary 0 0.00 0.00 3.19 0.00 4.07 0.00 0.00 0.00 0.00 0.00 11.27 0.00 0.00 2.47 4.94 8.03 0.00 2.57 0.00 3.20 28.36 2.94 8.37 30 ER3b ExonRegion 0 3.81 0.00 3.02 0.00 9.99 0.00 0.66 5.76 2.02 0.00 11.86 0.00 0.00 11.86 12.96 10.11 7.37 3.57 0.00 5.39 69.49 22.22 6.66 31 E3_Db KnownBoundary 0 6.74 0.00 0.00 0.00 0.00 0.00 0.00 7.06 1.33 0.00 2.63 0.00 0.00 2.59 4.45 0.00 0.00 2.24 0.00 0.00 45.78 9.06 3.59 32 E3b_E7c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER3c ExonRegion 0 6.35 0.00 2.45 0.00 8.92 0.00 0.00 6.91 4.94 0.00 13.53 0.00 0.00 12.99 17.41 8.92 9.90 3.70 0.00 2.84 88.88 27.78 8.81 34 ER3d ExonRegion 0 8.34 0.00 1.11 0.00 4.35 0.00 0.00 5.66 5.11 0.00 10.92 0.00 0.55 11.37 10.58 5.07 12.49 1.74 1.37 4.46 94.07 23.86 18.48 35 E3_Dc KnownBoundary 0 14.82 0.00 0.00 0.00 4.33 0.00 0.00 0.00 4.31 0.00 10.16 0.00 0.00 9.89 13.72 3.67 13.09 0.00 4.80 6.07 77.72 28.29 18.78 36 ER3e ExonRegion 0 5.79 0.00 3.13 0.00 2.61 0.19 0.85 2.18 5.95 0.00 11.34 0.97 4.81 6.45 6.26 4.54 4.47 0.00 4.74 4.03 78.87 19.25 29.25 37 E3d_E4a KnownJunction 0 9.78 0.00 2.69 0.00 0.00 2.21 0.00 7.31 9.20 0.00 16.32 6.30 0.00 4.71 0.00 0.00 3.46 0.00 4.61 5.88 104.47 4.78 11.27 38 ER4a ExonRegion 0 4.52 0.00 2.57 0.49 0.40 1.88 0.79 4.23 4.58 0.00 9.53 0.73 0.19 7.28 8.14 8.55 8.32 4.91 1.44 5.07 79.81 20.02 16.63 39 E4a_E5a KnownJunction 0 2.74 0.00 1.57 1.80 3.90 2.16 2.08 0.00 5.32 0.00 14.48 0.00 0.00 0.00 4.45 7.78 13.56 1.82 0.00 5.43 98.47 26.33 15.96 40 ER5a ExonRegion 0 6.64 0.00 3.23 0.27 4.26 0.81 0.88 3.93 3.43 0.43 17.31 5.54 3.10 8.75 6.98 3.35 9.34 1.47 1.43 1.66 93.69 15.17 14.11 41 E5_Da KnownBoundary 0 10.52 0.00 3.08 0.00 0.00 0.00 0.00 5.13 4.02 1.67 7.48 0.00 0.00 4.53 8.90 0.00 19.07 7.05 0.00 6.07 57.76 6.18 20.57 42 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 3.21 0.00 4.69 7.65 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 17.79 2.27 0.00 43 ER5b ExonRegion 0 7.43 0.00 3.58 0.00 3.36 0.01 0.40 3.24 5.01 0.64 10.93 0.35 0.00 4.50 3.16 4.03 9.33 4.39 2.03 1.80 60.35 7.60 8.22 44 E5_Db KnownBoundary 0 10.15 0.00 2.78 0.00 0.00 0.00 0.00 6.24 5.50 1.34 15.79 6.30 0.00 4.83 4.45 3.76 0.00 2.53 0.00 0.00 43.00 17.02 7.94 45 ER5c ExonRegion 0 5.26 0.21 1.73 0.64 1.67 1.34 2.08 2.29 1.61 0.04 8.08 4.72 3.57 6.09 5.94 3.96 9.65 4.01 1.66 0.89 59.99 12.74 18.34 46 E5_Dc NovelBoundary 0 3.33 0.00 1.15 0.00 0.00 0.00 0.00 2.51 0.00 0.00 2.21 18.31 0.00 9.59 4.45 4.19 13.56 0.00 13.65 3.26 58.32 3.12 7.17 47 I5 Intron 0 1.53 0.00 0.92 0.73 1.93 1.32 1.34 2.42 1.46 0.00 6.56 5.17 1.91 4.40 4.97 2.58 4.29 0.73 1.84 1.23 34.54 10.54 8.91 48 I5_AR1 ActiveIntronRegion 0 2.10 0.00 0.15 0.00 1.95 2.67 1.45 1.43 2.11 0.00 5.61 7.55 2.61 5.12 2.24 2.46 2.66 1.65 2.21 1.31 39.18 12.74 5.60 49 I5_SR1 SilentIntronRegion 0 1.53 0.00 1.23 1.01 1.99 1.09 1.45 2.84 1.33 0.00 7.27 5.06 1.84 4.33 5.93 2.61 5.18 0.55 1.93 1.34 35.78 10.75 10.14 50 I5_AR2 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 1.42 0.00 0.00 1.02 1.11 0.00 2.31 0.00 0.83 3.34 2.96 2.62 0.00 0.00 0.00 0.00 10.67 2.70 5.93 51 E6_Aa NovelBoundary 0 0.00 0.00 4.61 0.00 0.00 2.33 0.00 4.60 0.00 0.00 4.21 6.15 0.00 2.47 4.45 4.27 3.93 0.00 0.00 0.00 48.25 2.63 3.76 52 ER6a ExonRegion 0 2.59 0.00 0.37 0.00 0.00 0.75 1.08 1.05 1.13 0.00 5.13 0.73 0.79 3.00 4.42 0.61 1.80 0.00 1.30 0.43 20.10 2.55 8.99 53 E6_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 2.53 0.00 0.00 9.77 8.90 0.00 0.00 0.00 0.00 0.00 20.94 7.59 3.41 54 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.49 0.00 0.00 0.00 2.72 0.00 0.00 55 I6 Intron 0 0.83 0.00 0.14 0.32 0.21 0.29 0.73 0.00 1.45 0.00 3.19 0.00 0.98 1.67 3.34 1.63 2.59 0.22 0.25 0.00 19.91 3.11 3.23 56 I6_AR1 ActiveIntronRegion 0 0.83 0.00 0.14 0.32 0.21 0.29 0.73 0.00 1.45 0.00 3.20 0.00 0.98 1.67 3.35 1.64 2.60 0.22 0.25 0.00 19.97 3.12 3.24 57 ER7a ExonRegion 0 2.22 0.00 2.04 0.53 0.46 2.04 0.66 1.56 2.12 0.89 14.30 0.87 0.33 5.22 6.55 3.85 3.68 0.88 1.65 1.35 42.92 8.42 7.14 58 E7_Ab KnownBoundary 0 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 13.59 2.82 0.00 59 E7_Ac KnownBoundary 0 2.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 2.63 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 3.20 8.59 3.12 0.00 60 ER7b ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.71 0.00 7.73 0.00 0.00 4.87 0.00 0.00 6.60 0.00 0.00 2.13 26.44 8.33 3.92 61 ER7c ExonRegion 0 1.74 0.00 0.00 0.00 0.00 0.00 0.05 0.00 2.69 0.00 5.41 0.00 0.00 2.76 9.46 0.53 11.62 0.00 0.00 2.77 26.18 4.54 11.16 62 E7_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 2.58 0.00 0.00 2.71 8.90 3.42 7.11 0.00 0.00 3.07 17.11 0.00 3.41 63 ER7d ExonRegion 0 1.32 0.00 0.59 0.00 2.51 0.00 1.23 1.61 0.11 0.00 3.36 0.00 1.21 1.53 4.63 2.63 3.46 0.00 1.99 0.89 23.04 7.09 5.30 64 E7_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 2.94 0.00 0.00 3.65 0.00 0.00 0.00 11.31 0.00 4.35 65 ER7e ExonRegion 0 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 1.54 2.68 0.00 4.15 0.00 0.00 2.78 8.02 2.88 4.67