Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LZTS2 Gene 0 26.75 17.37 65.59 23.47 15.18 28.73 15.22 29.10 26.52 27.28 27.63 8.73 7.70 51.96 28.56 22.31 28.93 48.63 29.66 33.11 143.75 68.21 84.54 2 426584 Transcript 0 3.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.51 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.10 0.02 0.05 3 370223 Transcript 0 15.55 2.74 2.68 0.70 0.00 17.70 3.05 0.00 0.00 3.55 14.38 0.00 3.93 5.17 13.22 17.97 4.91 5.72 4.52 0.30 10.40 8.04 19.67 4 489526 Transcript 0 7.48 6.73 17.05 10.87 9.00 12.03 7.57 7.06 4.67 7.38 7.50 0.00 6.70 14.08 5.12 9.97 5.72 10.29 10.30 10.38 23.13 13.69 6.39 5 315797 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 429732 Transcript 0 0.00 1.48 0.00 1.51 1.08 12.99 0.00 1.85 0.78 1.87 1.65 1.44 0.00 8.12 4.56 0.00 0.00 1.93 0.00 1.91 4.22 0.00 2.74 7 481129 Transcript 0 1.46 0.00 4.14 1.58 2.31 2.22 1.14 4.06 3.80 3.10 8.19 0.92 1.74 8.79 6.03 1.80 3.70 3.40 3.29 4.05 9.51 7.52 8.17 8 370220 Transcript 0 5.97 4.73 13.16 6.38 4.28 6.74 4.33 7.49 7.57 7.35 9.33 5.50 2.76 13.10 5.95 5.50 9.39 13.48 8.97 13.78 27.69 14.33 21.14 9 454422 Transcript 0 0.00 2.70 26.94 5.03 8.23 8.46 6.23 10.84 14.24 1.16 2.47 0.00 0.00 4.83 10.01 0.00 0.00 27.19 30.21 14.38 66.04 28.78 39.01 10 459989 Transcript 0 29.11 29.42 62.80 48.21 33.87 25.28 30.78 41.02 35.63 28.66 12.21 14.38 31.05 24.58 27.50 20.89 24.97 51.23 33.21 32.83 31.37 23.02 37.96 11 ER1a ExonRegion 0 6.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.20 0.04 0.11 12 E1a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 15.55 2.74 2.68 0.70 0.00 17.70 3.05 0.00 0.00 3.55 14.38 0.00 3.93 5.17 13.22 17.97 4.91 5.72 4.52 0.30 10.40 8.04 19.67 14 E2_Ab KnownBoundary 0 51.64 8.75 9.37 3.63 0.00 43.33 8.30 4.31 3.07 7.09 34.11 5.40 0.00 10.18 32.14 47.08 18.05 9.29 15.91 0.00 20.82 20.15 44.56 15 ER2b ExonRegion 0 15.85 0.95 9.75 2.87 0.00 8.27 1.48 0.20 2.47 7.80 16.78 3.87 1.85 8.14 9.17 12.74 6.71 4.36 5.42 1.58 22.22 9.27 21.65 16 E2a_E5c KnownJunction 0 2.89 0.00 15.76 1.96 0.00 0.00 0.00 2.30 2.98 9.56 22.16 0.00 0.00 4.89 10.63 4.10 4.77 0.00 3.67 0.00 19.89 5.45 3.41 17 ER2c ExonRegion 0 0.65 0.00 12.91 2.04 0.00 1.97 0.00 1.73 2.47 6.88 16.21 0.00 1.98 7.93 16.29 1.94 2.79 0.07 3.19 2.13 17.29 4.17 3.39 18 E3_Aa NovelBoundary 0 6.15 0.00 7.13 3.46 3.74 0.00 0.00 2.05 3.33 3.22 9.69 5.70 8.12 7.06 15.95 3.33 9.54 7.13 3.48 7.99 7.17 4.90 19.21 19 ER3a ExonRegion 0 0.00 0.00 0.00 1.00 2.17 4.69 0.00 1.40 0.00 0.84 0.67 2.89 0.00 11.52 9.12 0.00 0.00 1.38 0.00 3.82 3.01 0.00 1.82 20 E3_Da NovelBoundary 0 0.00 0.00 2.84 2.06 0.00 2.84 1.85 1.97 1.27 4.57 5.05 0.00 0.00 32.26 5.93 0.00 8.70 4.10 21.08 6.39 0.00 0.00 12.80 21 E3a_E5c KnownJunction 0 0.00 2.96 0.00 2.03 0.00 21.29 0.00 2.30 1.56 2.90 2.63 0.00 0.00 4.71 0.00 0.00 0.00 2.49 0.00 0.00 5.44 0.00 3.67 22 E4_Aa NovelBoundary 0 9.93 0.00 4.70 3.23 7.89 10.56 2.25 3.49 1.39 1.24 7.42 0.00 0.00 34.61 18.30 3.42 7.76 11.81 3.76 2.62 11.18 5.82 21.94 23 ER4a ExonRegion 0 2.93 0.00 6.46 3.16 4.63 4.44 2.29 6.07 7.61 6.20 11.00 1.85 3.48 17.58 12.07 3.60 7.41 6.80 6.59 8.09 15.87 9.52 12.40 24 E4_Da NovelBoundary 0 0.00 0.00 6.24 2.06 4.33 11.02 2.08 4.60 12.30 6.07 5.00 0.00 0.00 9.48 20.15 8.72 3.74 12.19 19.01 11.95 24.83 5.51 23.65 25 E4a_E5c KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 2.05 0.00 0.00 5.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 5.51 3.93 26 ER5a ExonRegion 0 0.27 0.30 1.60 0.55 0.36 1.66 0.36 0.35 0.99 1.84 4.15 0.96 0.00 3.02 0.87 1.20 3.56 2.54 2.17 2.30 11.88 1.69 7.95 27 E5_Ab KnownBoundary 0 9.19 0.00 2.93 0.00 0.00 8.57 0.00 0.00 0.00 0.00 1.95 0.00 0.00 2.24 0.00 0.00 0.00 1.95 8.94 0.00 40.34 0.00 36.54 28 ER5b ExonRegion 0 7.70 7.46 18.57 4.54 0.92 11.50 6.83 6.01 6.89 4.26 3.79 0.00 2.42 11.07 2.40 3.06 3.07 28.76 21.43 9.33 69.29 35.67 60.54 29 E5_Da KnownBoundary 0 0.00 0.00 1.69 0.00 0.00 0.00 0.00 6.53 4.86 0.00 4.79 0.00 0.00 4.77 5.44 0.00 3.83 6.80 0.00 6.26 16.43 0.00 8.19 30 E5a_E5c KnownJunction 0 0.00 2.70 26.94 5.03 8.23 8.46 6.23 10.84 14.24 1.16 2.47 0.00 0.00 4.83 10.01 0.00 0.00 27.19 30.21 14.38 66.04 28.78 39.01 31 ER5c ExonRegion 0 11.67 9.16 24.72 12.20 8.20 11.82 8.29 14.62 14.16 12.86 14.52 10.03 5.51 23.18 11.02 9.79 15.22 24.43 15.77 25.27 43.51 26.97 34.33 32 E5_Ac KnownBoundary 0 38.90 12.63 50.23 21.48 15.96 18.28 8.57 23.25 23.03 17.51 25.64 12.60 0.00 32.43 8.90 11.62 9.44 52.40 24.94 23.71 94.70 20.39 26.04 33 ER5d ExonRegion 0 22.53 10.74 102.15 28.63 9.62 42.05 15.40 37.47 45.81 34.84 56.20 5.54 13.66 81.54 54.75 36.04 41.64 87.41 55.09 54.75 272.76 124.30 145.41 34 E5_Ad KnownBoundary 0 49.49 9.01 153.96 35.06 17.23 79.78 25.75 37.09 36.89 57.57 78.91 18.31 5.84 76.93 43.14 44.26 59.47 116.98 62.68 81.30 367.82 99.01 154.59 35 ER5e ExonRegion 0 53.91 29.20 163.48 53.57 29.16 58.77 22.10 59.42 74.16 72.90 83.56 21.49 21.41 141.69 80.55 67.38 88.04 149.32 93.47 76.60 471.90 202.97 219.80 36 E5_Db KnownBoundary 0 3.11 3.03 7.24 11.35 3.65 7.78 6.05 8.58 9.75 2.95 4.90 0.00 0.00 9.36 4.45 14.87 3.65 10.57 13.18 0.00 27.80 10.29 14.34 37 E5b_E6a KnownJunction 0 231.67 29.27 190.18 61.80 67.32 129.75 53.04 77.01 84.11 94.55 143.09 41.71 40.26 217.49 133.01 95.70 135.48 162.46 167.63 108.28 653.05 321.17 465.14 38 E5b_E7b NovelJunction 0 0.00 0.00 6.21 0.00 0.00 0.00 0.00 0.00 0.00 2.85 0.00 0.00 0.00 4.83 0.00 0.00 0.00 0.00 9.13 2.49 16.00 2.27 0.00 39 ER5f ExonRegion 0 7.48 6.73 17.05 10.87 9.00 12.03 7.57 7.06 4.67 7.38 7.50 0.00 6.70 14.08 5.12 9.97 5.72 10.29 10.30 10.38 23.13 13.69 6.39 40 E5_Dc NovelBoundary 0 20.08 8.75 23.03 11.12 3.74 18.40 10.33 4.39 11.69 14.00 7.42 12.60 0.00 14.48 11.50 19.14 8.42 12.02 27.39 15.53 29.22 36.25 10.84 41 Ix Intron 0 7.32 8.20 24.20 5.85 9.25 12.69 5.34 6.68 3.71 5.91 6.68 3.08 6.68 11.56 5.80 4.28 1.90 7.95 12.85 10.42 24.10 10.21 7.62 42 Ix_SR1 SilentIntronRegion 0 7.40 8.30 24.47 5.92 9.36 12.84 5.39 6.76 3.75 5.97 6.76 3.12 6.75 11.69 5.87 4.31 1.92 8.05 13.00 10.54 24.34 10.32 7.67 43 E6_Aa NovelBoundary 0 28.82 18.55 30.87 17.88 12.82 21.64 20.01 16.06 8.62 13.67 17.48 0.00 12.66 27.19 8.90 12.48 13.28 18.36 18.73 30.17 44.67 29.64 21.77 44 ER6a ExonRegion 0 39.26 23.56 139.34 47.37 19.67 61.69 20.84 51.50 53.12 56.34 63.31 17.18 20.63 122.85 71.51 52.98 79.33 108.23 84.97 59.37 415.24 199.47 228.21 45 E6_Da KnownBoundary 0 31.26 18.02 69.75 40.05 23.94 95.57 33.56 25.38 22.89 34.84 40.69 6.30 26.46 130.44 69.10 47.00 65.83 57.08 62.59 41.16 321.43 125.71 139.40 46 ER6b ExonRegion 0 29.54 25.76 120.64 40.47 21.85 41.71 21.62 45.86 33.46 43.79 37.46 10.89 13.29 101.02 45.32 36.52 53.96 78.42 70.08 52.68 337.67 158.03 141.98 47 E6_Db KnownBoundary 0 73.86 49.86 184.35 50.34 38.12 52.87 35.20 82.07 47.60 55.63 41.64 0.00 26.62 106.48 34.98 57.68 66.20 115.95 138.07 76.13 492.86 200.11 220.92 48 ER6c ExonRegion 0 32.88 24.12 103.40 34.59 15.55 48.50 27.94 59.60 28.22 44.43 34.93 7.61 12.86 110.22 42.22 45.71 68.07 63.56 52.61 35.84 315.05 143.44 186.43 49 E6_Dc KnownBoundary 0 33.34 27.56 119.51 43.72 7.56 63.43 34.05 75.25 35.30 47.28 23.95 7.20 6.49 92.12 57.98 56.40 66.95 108.65 65.04 33.49 251.19 208.99 214.18 50 ER6d ExonRegion 0 25.66 24.38 110.42 31.86 22.04 55.26 28.49 49.26 40.10 49.55 51.08 11.55 8.94 119.60 51.22 45.77 62.29 85.16 47.02 54.51 312.05 128.02 175.62 51 E6_Dd KnownBoundary 0 14.22 12.43 24.04 13.29 4.16 10.11 12.63 13.31 6.74 10.77 16.21 13.95 7.79 24.37 8.90 0.00 17.67 27.32 12.33 15.92 47.82 13.78 46.18 52 E6d_E7b KnownJunction 0 37.56 5.59 112.41 37.92 33.45 48.89 27.38 53.72 45.20 56.22 39.69 12.30 0.00 80.41 45.86 42.89 42.36 81.83 63.34 49.92 303.88 75.13 201.37 53 ER6e ExonRegion 1 2.63 6.10 9.95 2.78 3.33 4.49 7.03 7.69 1.97 3.86 9.47 6.36 10.05 15.61 19.95 0.18 13.34 13.58 7.87 9.12 21.59 13.61 20.62 54 E6_De NovelBoundary 0 0.00 15.92 31.90 12.85 11.46 8.29 23.49 13.31 9.26 8.22 4.37 0.00 6.82 16.25 13.97 19.05 8.98 40.54 9.51 9.14 45.16 11.39 25.18 55 E6e_E7a KnownJunction 0 88.02 96.63 183.35 166.51 117.66 74.05 97.95 127.95 124.16 95.60 21.37 38.56 99.67 51.68 68.48 63.83 72.46 151.76 98.92 100.41 50.35 38.33 82.72 56 Ix Intron 0 7.02 6.75 9.09 1.68 4.44 6.84 4.94 2.14 8.38 2.13 7.21 2.96 0.00 15.96 1.84 7.39 8.21 11.82 7.92 6.18 30.15 17.28 8.52 57 Ix_SR1 SilentIntronRegion 0 7.08 6.80 9.16 1.70 4.47 6.90 4.98 2.15 8.44 2.14 7.27 2.98 0.00 16.09 1.85 7.45 8.25 11.92 7.99 6.23 30.38 17.42 8.59 58 E7_Aa NovelBoundary 1 2222.76 2351.49 3090.07 3074.13 1914.60 1458.54 2442.51 2727.23 2683.33 2393.00 660.27 483.31 522.69 224.97 730.58 2142.00 1635.34 3597.08 1590.35 2600.53 1108.53 867.43 1840.00 59 ER7a ExonRegion 0 25.81 14.97 57.89 23.57 14.50 22.58 18.14 28.44 16.40 15.16 18.01 12.61 14.47 31.01 21.54 19.54 14.07 39.59 26.05 21.81 53.53 40.16 48.50 60 E7_Ab KnownBoundary 0 21.19 13.94 76.14 29.37 18.34 32.03 22.39 34.83 29.83 13.78 9.63 12.60 6.82 21.13 32.51 0.00 8.13 49.12 17.22 25.50 52.02 25.41 35.17 61 ER7b ExonRegion 0 46.11 29.93 144.37 42.03 32.69 49.08 32.77 47.00 46.61 59.18 52.53 10.43 8.78 103.53 55.97 34.46 58.27 85.53 29.00 59.34 305.21 121.02 152.98 62 E7_Da NovelBoundary 0 8.67 8.75 49.70 17.05 3.74 26.75 10.78 14.29 14.64 33.44 19.27 0.00 6.33 9.42 9.52 18.97 11.31 35.86 3.86 15.40 67.83 24.62 30.90 63 E7a_E8a KnownJunction 0 60.46 69.66 136.96 55.10 27.25 64.51 59.62 54.34 52.46 74.46 70.60 0.00 20.29 96.53 60.08 56.65 62.65 124.19 35.48 50.24 285.16 138.51 202.48 64 E8_Aa NovelBoundary 0 10.08 3.16 16.94 7.46 7.47 10.22 4.24 14.54 10.24 7.33 2.68 0.00 6.82 9.77 4.45 0.00 3.55 20.15 0.00 2.49 22.98 5.69 4.18 65 ER8a ExonRegion 0 37.76 28.58 133.20 49.34 29.23 59.46 30.85 42.95 46.00 62.20 42.02 3.46 11.14 100.82 53.45 41.30 49.42 103.27 36.26 59.87 277.26 114.62 154.26 66 E8_Da KnownBoundary 0 47.79 23.68 130.04 55.37 13.92 44.97 10.82 28.75 51.76 65.17 38.54 0.00 20.45 47.09 32.02 28.62 55.26 67.90 39.25 62.77 187.06 75.62 108.84 67 E8a_E8c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 ER8b ExonRegion 0 53.78 22.38 94.69 26.90 15.04 41.24 19.49 29.33 28.23 41.79 22.98 5.69 4.93 81.37 55.78 31.54 38.14 77.75 43.43 47.35 210.66 73.90 135.84 69 E8_Db KnownBoundary 0 101.50 25.65 99.43 43.88 43.80 65.25 28.13 39.47 37.18 40.94 14.90 18.31 0.00 132.32 73.92 26.15 35.44 124.53 34.92 52.22 231.54 59.40 172.77 70 E8b_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71 ER8c ExonRegion 0 88.89 50.90 175.52 53.55 35.53 70.68 34.97 84.76 73.79 67.33 59.30 9.06 7.92 112.56 66.36 50.20 58.32 119.25 73.57 65.74 385.84 185.80 219.71 72 E8_Ab KnownBoundary 0 27.26 29.67 96.66 22.71 37.44 23.34 23.01 51.06 48.47 23.91 21.85 6.60 0.00 14.07 0.00 10.77 23.00 27.57 9.60 24.03 155.43 77.22 78.79 73 E8_Ac KnownBoundary 0 128.47 38.55 64.49 35.69 55.60 46.39 26.37 33.11 45.23 66.19 66.33 0.00 6.82 47.74 11.62 44.52 64.33 55.84 25.69 64.56 290.72 135.02 195.05 74 ER8d ExonRegion 0 126.14 78.50 174.98 61.33 66.89 72.99 40.51 95.76 79.79 70.42 77.32 4.33 4.69 107.19 41.78 51.71 69.32 49.89 27.39 81.28 459.25 179.18 241.39 75 ER8e ExonRegion 0 45.14 39.70 118.00 53.03 31.22 55.72 25.60 58.78 40.12 47.69 38.44 5.16 5.97 90.43 52.02 34.46 40.67 45.72 32.51 47.64 222.83 103.55 140.82 76 E8_Dc KnownBoundary 0 42.08 17.83 130.33 57.07 14.69 11.02 10.16 33.89 40.42 37.58 43.70 5.25 5.68 53.86 37.70 3.33 25.81 26.70 4.52 35.47 114.84 58.05 65.73 77 ER8f ExonRegion 0 70.55 44.87 81.90 38.04 44.46 54.83 24.46 32.28 29.16 23.39 24.02 16.08 10.05 29.87 17.18 17.46 22.99 25.60 14.22 12.36 64.93 41.60 49.17 78 ER8g ExonRegion 0 2.65 7.37 0.92 0.85 7.36 0.00 0.50 0.86 0.00 0.00 0.48 0.00 0.00 0.41 0.73 0.00 1.24 0.46 0.40 0.00 1.10 5.73 2.20