Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SEMA4G Gene 0 10.69 23.61 50.20 30.34 14.70 58.04 15.74 53.46 45.00 20.32 4.59 2.90 2.45 7.52 7.11 5.75 4.74 40.03 24.14 37.31 22.04 16.38 26.82 2 457585 Transcript 0 0.00 0.00 2.36 1.14 1.13 6.86 2.27 4.50 2.31 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 2.33 3.55 1.98 2.80 5.61 3 370250 Transcript 0 0.00 8.95 17.09 8.92 0.00 7.67 4.37 12.94 16.90 4.38 0.00 0.00 0.00 2.47 0.00 0.00 0.00 14.51 8.75 5.94 3.15 10.65 3.16 4 210633 Transcript 0 3.46 7.16 25.05 17.53 8.68 50.01 24.72 17.59 34.76 12.47 0.97 0.29 0.00 0.81 2.32 0.89 0.77 8.48 11.54 22.53 1.98 4.52 5.11 5 476171 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 484128 Transcript 0 1.78 13.88 30.59 17.75 5.31 26.66 1.13 24.52 15.12 7.04 0.00 0.00 0.00 0.00 2.23 0.00 0.00 7.32 2.35 7.41 6.92 4.19 2.18 7 ER1a ExonRegion 0 0.00 0.00 4.71 2.27 2.26 13.73 4.55 9.00 4.62 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.16 4.66 7.09 3.96 5.61 11.22 8 E1_Ab KnownBoundary 0 6.45 0.00 12.98 7.29 18.25 40.89 20.18 36.19 27.40 6.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.21 13.84 17.96 8.90 11.51 32.69 9 ER1b ExonRegion 0 2.14 9.30 26.93 13.48 12.51 44.14 11.14 34.18 34.35 12.29 0.00 0.68 0.73 0.79 0.55 0.00 0.00 35.87 17.57 32.17 20.29 11.19 20.09 10 E1_Ac KnownBoundary 0 7.11 28.61 23.62 20.28 18.51 136.74 32.46 31.75 32.41 17.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.66 40.28 34.52 39.60 14.70 12.46 11 ER1c ExonRegion 0 6.81 13.75 15.08 9.66 6.32 27.02 9.50 21.96 28.48 13.21 0.98 0.00 0.00 0.65 0.48 0.75 0.87 25.69 13.09 25.14 23.19 10.75 19.34 12 E1a_E2a KnownJunction 0 0.00 15.26 13.10 10.75 4.33 40.32 8.39 25.14 31.97 5.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.61 11.67 29.21 20.26 17.15 14.26 13 ER2a ExonRegion 0 3.15 13.27 17.48 10.24 6.84 34.19 12.81 26.03 29.22 9.24 0.00 0.00 0.00 0.46 1.05 2.03 1.09 30.98 12.23 32.64 16.80 11.20 21.68 14 E2a_E3a KnownJunction 0 5.93 12.50 19.93 19.01 0.00 64.00 12.06 23.70 23.99 8.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.35 20.80 38.22 18.72 2.76 7.43 15 E3_Aa NovelBoundary 0 3.11 0.00 12.71 6.09 7.56 7.72 4.06 7.52 14.12 6.90 0.00 0.00 0.00 0.00 4.45 0.00 0.00 11.52 8.38 2.36 5.50 2.45 3.67 16 ER3a ExonRegion 0 4.27 16.27 21.01 30.03 9.39 36.12 12.17 34.40 32.49 10.85 0.00 0.00 0.00 0.77 2.53 0.00 2.67 33.44 19.92 32.35 23.58 17.86 18.13 17 E3a_E4a KnownJunction 0 3.78 12.23 28.00 36.39 22.84 64.34 9.85 38.49 39.50 16.12 0.00 0.00 0.00 2.47 10.01 0.00 0.00 36.56 9.51 38.48 38.86 14.57 19.97 18 ER4a ExonRegion 0 5.30 7.44 26.01 19.08 12.92 44.09 15.34 31.90 44.93 14.78 0.00 0.00 0.00 0.20 2.43 3.06 0.00 41.96 21.75 47.80 27.25 16.25 24.95 19 E4_Da NovelBoundary 0 3.41 10.06 0.00 0.00 4.16 0.00 6.18 2.14 6.28 0.00 0.00 6.15 0.00 0.00 0.00 0.00 0.00 6.88 15.53 0.00 0.00 0.00 3.33 20 E4a_E5a KnownJunction 0 3.41 15.79 30.10 20.31 20.71 93.92 12.54 33.11 42.13 16.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.41 7.81 49.73 20.45 8.08 23.73 21 E5_Aa NovelBoundary 0 24.60 32.30 49.41 82.57 19.44 37.42 16.91 36.10 39.76 39.43 23.90 29.56 6.01 12.13 21.51 10.68 15.52 78.68 21.93 41.29 7.66 12.31 12.21 22 ER5a ExonRegion 0 2.63 9.45 19.93 14.57 11.33 33.61 7.35 30.56 31.50 9.41 0.00 0.00 0.00 0.00 1.36 0.00 0.00 19.19 6.07 27.32 21.12 11.10 10.75 23 E5_Da NovelBoundary 0 24.97 23.22 40.65 56.94 63.07 45.77 26.54 44.11 24.36 48.54 17.53 12.90 6.17 15.07 4.45 28.80 8.42 51.32 25.41 52.03 5.56 8.39 0.00 24 E5a_E6a KnownJunction 0 0.00 11.58 29.15 15.68 7.81 32.99 5.87 30.85 38.34 6.12 0.00 0.00 0.00 0.00 4.70 0.00 0.00 9.45 8.56 14.45 12.11 7.84 3.76 25 E6_Aa NovelBoundary 0 36.52 49.99 43.91 50.64 49.15 43.21 28.26 37.13 21.44 53.24 23.48 12.15 6.01 12.60 4.70 10.94 17.86 46.43 34.07 24.93 2.59 4.53 7.85 26 ER6a ExonRegion 0 0.61 9.29 20.32 13.78 1.46 21.38 6.92 16.92 26.80 10.19 0.00 0.00 0.00 0.00 0.59 0.00 0.00 14.10 4.67 14.20 13.90 5.46 10.84 27 E6_Da NovelBoundary 0 54.01 29.47 57.36 41.52 32.34 30.83 9.89 44.48 18.43 45.80 24.06 18.16 0.00 9.54 18.54 18.11 25.15 50.90 42.07 49.22 8.34 2.57 8.02 28 E6a_E7a KnownJunction 0 3.63 18.29 24.72 23.37 3.82 35.89 7.91 25.88 45.11 18.19 0.00 0.00 0.00 0.00 4.45 0.00 0.00 22.09 13.65 26.27 24.65 2.94 22.54 29 E7_Aa NovelBoundary 0 9.71 56.44 39.27 35.56 32.09 50.20 19.70 38.94 36.05 40.08 17.11 12.45 0.00 14.24 19.66 11.45 13.28 68.15 21.93 57.08 6.24 20.08 20.40 30 ER7a ExonRegion 0 2.13 7.50 13.52 10.46 1.02 33.70 6.42 17.04 24.85 7.52 0.00 2.04 0.00 0.00 0.34 0.00 0.00 15.87 4.72 12.92 7.86 1.86 4.70 31 E7_Da NovelBoundary 0 10.45 0.00 25.43 22.21 0.00 10.56 10.25 12.32 10.56 13.24 5.05 0.00 0.00 4.94 4.45 12.22 13.46 19.28 11.95 14.38 8.96 0.00 0.00 32 E7a_E8a KnownJunction 0 0.00 21.05 33.29 21.54 0.00 41.00 8.21 30.64 43.08 11.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.60 12.42 37.33 14.58 11.39 10.67 33 E8_Aa NovelBoundary 0 20.00 12.70 52.16 43.22 19.35 76.83 5.92 33.80 22.66 44.24 14.69 12.60 6.82 16.25 19.66 29.31 18.89 57.08 35.01 49.02 11.37 2.69 14.51 34 ER8a ExonRegion 0 3.67 9.61 20.65 18.50 3.42 37.18 8.79 34.03 34.97 15.35 0.00 2.24 0.00 0.00 1.59 0.02 0.99 31.50 11.22 24.27 13.78 8.37 17.38 35 E8_Da NovelBoundary 0 3.19 18.02 51.15 42.62 8.40 10.96 6.23 10.10 25.14 36.59 27.11 26.26 0.00 2.47 0.00 23.33 17.20 33.83 4.33 31.77 13.53 7.78 4.10 36 E8a_E9a KnownJunction 0 3.11 5.66 24.75 35.56 7.56 48.49 10.02 54.14 31.11 25.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.28 17.32 26.97 22.05 13.10 20.40 37 Ix Intron 0 2.56 4.92 7.50 9.33 5.17 9.31 5.12 16.19 8.90 8.26 7.48 4.31 4.87 7.74 6.27 5.75 4.79 22.86 10.78 12.34 4.79 2.01 4.26 38 Ix_AR1 ActiveIntronRegion 0 2.74 5.26 8.04 9.99 5.53 9.97 5.48 17.34 9.53 8.84 8.01 4.62 5.21 8.29 6.70 6.16 5.13 24.49 11.54 13.22 5.13 2.16 4.56 39 E9_Aa NovelBoundary 0 3.70 8.88 8.84 13.72 7.72 4.77 16.78 13.84 13.19 14.99 6.79 0.00 0.00 7.12 10.14 4.36 0.00 31.26 0.00 16.87 3.09 2.45 0.00 40 ER9a ExonRegion 0 4.63 12.75 32.04 32.39 15.21 56.76 17.08 60.25 41.90 25.47 6.12 0.00 6.11 6.55 7.86 3.12 4.64 66.98 37.21 43.11 17.75 14.30 24.93 41 E9_Da NovelBoundary 0 15.11 19.01 25.07 25.07 31.24 30.83 15.41 22.71 19.65 35.48 9.90 12.00 0.00 12.01 4.45 18.20 0.00 65.04 22.78 22.05 16.74 5.51 8.45 42 E9a_E10a KnownJunction 0 0.00 25.26 27.56 25.37 11.97 45.14 12.54 47.32 24.42 16.63 0.00 0.00 6.82 0.00 0.00 0.00 0.00 37.23 3.95 25.69 5.62 9.98 14.43 43 E10_Aa NovelBoundary 0 0.00 3.09 14.61 26.64 3.48 12.78 0.00 16.31 20.78 31.91 10.00 0.00 6.17 14.66 4.45 3.59 0.00 53.56 17.88 25.89 11.24 0.00 11.87 44 ER10a ExonRegion 0 6.23 26.00 53.20 33.17 16.04 60.48 13.20 54.81 43.82 28.16 11.86 7.71 4.46 6.36 10.11 8.84 8.30 67.41 27.65 46.31 21.27 18.68 25.86 45 E10_Da NovelBoundary 0 2.96 26.57 27.53 17.68 10.70 67.46 12.76 35.53 35.62 20.87 14.32 11.70 0.00 11.83 10.63 14.95 3.83 44.98 8.66 26.08 5.19 3.12 12.98 46 E10a_E11a KnownJunction 0 2.82 16.77 46.04 14.68 12.14 42.70 4.02 45.67 49.71 7.58 2.11 6.30 6.82 0.00 0.00 0.00 0.00 55.67 21.46 42.70 14.09 6.06 20.91 47 Ix Intron 0 3.33 7.68 16.10 5.75 16.00 17.90 9.59 13.78 11.59 12.38 11.56 4.73 1.22 9.96 6.98 7.49 5.20 25.17 19.05 22.10 11.10 4.59 4.62 48 Ix_AR1 ActiveIntronRegion 0 3.37 7.77 16.29 5.83 16.19 18.10 9.71 13.96 11.73 12.53 11.71 4.79 1.23 10.08 7.07 7.58 5.26 25.49 19.29 22.38 11.24 4.65 4.68 49 E11_Aa NovelBoundary 0 7.26 11.12 33.29 25.04 7.64 40.77 10.60 41.77 21.61 21.70 12.63 6.30 6.33 4.53 6.30 12.22 4.39 58.74 11.67 33.68 19.71 7.84 15.96 50 ER11a ExonRegion 0 1.99 5.49 43.64 27.74 6.07 48.28 8.57 42.20 52.11 15.80 1.85 0.63 0.77 1.13 2.95 3.87 0.00 33.20 11.04 36.70 15.88 18.73 20.96 51 E11_Da NovelBoundary 0 7.26 2.83 12.18 13.15 15.11 30.10 15.15 20.91 5.87 9.70 15.74 7.65 6.82 2.12 6.30 21.19 4.49 11.15 32.85 9.14 5.50 0.00 0.00 52 E11a_E12a KnownJunction 0 0.00 12.10 40.42 37.66 8.06 19.31 10.47 35.20 54.08 13.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.25 13.18 26.65 7.66 24.31 7.43 53 E12_Aa NovelBoundary 0 9.04 15.06 22.68 20.74 4.07 20.50 12.54 21.19 13.45 11.47 4.79 6.30 0.00 7.30 4.94 3.93 3.93 29.80 0.00 41.16 6.12 2.69 8.11 54 ER12a ExonRegion 0 7.01 34.85 46.11 25.67 12.91 62.04 18.67 53.40 55.66 21.75 3.98 3.18 2.35 8.87 4.24 4.43 6.96 54.04 39.60 43.22 15.69 24.72 30.09 55 E12_Da KnownBoundary 0 6.89 39.93 58.28 33.86 19.61 95.63 18.86 51.26 56.25 27.45 7.53 12.60 13.64 21.07 4.45 15.64 3.83 53.56 27.58 41.10 16.49 19.66 34.40 56 E12a_E14e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER12b ExonRegion 0 7.25 22.54 55.66 27.00 11.43 66.95 14.65 34.28 40.38 26.26 4.46 6.68 2.62 9.94 10.82 7.46 4.70 26.96 20.03 24.99 11.43 16.32 22.50 58 E12_Db NovelBoundary 0 6.67 5.26 31.81 21.04 16.81 39.52 11.13 19.26 27.66 21.17 7.74 0.00 0.00 2.47 8.90 7.78 3.55 7.96 3.67 23.59 5.31 2.69 3.41 59 E12b_E13a KnownJunction 0 0.00 8.95 17.09 8.92 0.00 7.67 4.37 12.94 16.90 4.38 0.00 0.00 0.00 2.47 0.00 0.00 0.00 14.51 8.75 5.94 3.15 10.65 3.16 60 E12_Dc NovelBoundary 0 3.19 17.63 9.37 12.22 4.33 2.73 4.50 20.74 14.26 10.40 13.32 18.46 6.82 4.94 9.64 0.00 4.77 33.99 0.00 30.62 5.44 6.25 7.34 61 E12c_E13a KnownJunction 0 2.96 8.22 23.39 18.98 7.72 50.26 29.50 18.94 36.66 11.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 12.89 24.35 0.00 5.02 4.35 62 ER12c ExonRegion 0 3.95 6.10 26.71 16.08 9.63 49.76 19.95 16.25 32.85 13.15 1.93 0.58 0.00 1.62 4.64 1.78 1.54 8.75 10.19 20.71 3.97 4.03 5.87 63 Ix Intron 0 6.98 24.40 13.69 10.97 20.07 14.85 18.27 16.23 17.12 20.51 15.66 12.25 9.27 11.35 11.93 9.81 2.97 31.41 28.67 23.62 5.95 4.38 10.57 64 Ix_SR1 SilentIntronRegion 0 8.79 30.91 16.06 13.44 23.08 17.83 21.04 18.77 19.15 23.18 16.92 13.85 8.97 13.70 14.00 12.67 4.01 39.18 36.23 24.87 4.93 5.90 12.45 65 Ix_AR1 ActiveIntronRegion 0 1.91 6.05 7.24 4.06 11.91 6.64 10.81 9.38 11.82 13.46 12.61 8.04 10.61 4.80 6.29 1.70 0.00 9.55 7.36 20.97 9.18 0.00 5.45 66 E13_Aa NovelBoundary 0 11.04 24.54 29.95 25.04 25.64 22.71 24.20 41.36 20.72 17.27 11.63 18.91 0.00 17.72 10.63 19.65 9.16 29.22 32.10 34.77 5.68 5.27 3.84 67 ER13a ExonRegion 0 4.68 16.89 37.04 29.79 11.18 76.81 16.87 45.11 50.36 15.45 6.27 17.60 9.53 7.13 6.69 4.84 2.72 16.30 17.47 42.14 14.93 14.01 21.74 68 E13_Da NovelBoundary 0 28.15 20.98 37.05 31.16 15.45 37.54 9.23 43.33 56.05 43.25 26.48 12.15 0.00 21.60 21.26 24.69 4.02 50.86 35.86 54.46 13.47 8.63 12.38 69 E13a_E14a KnownJunction 0 2.74 14.93 36.63 30.33 7.13 42.93 12.98 47.52 42.68 19.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.40 21.08 34.13 8.83 18.74 14.94 70 Ix Intron 0 6.96 13.38 7.51 5.85 25.31 18.86 7.62 11.65 6.81 9.14 9.54 18.02 9.53 5.66 9.41 9.78 6.79 13.98 18.34 29.75 2.72 2.57 6.04 71 Ix_AR1 ActiveIntronRegion 0 7.00 13.49 7.57 5.89 25.52 19.01 7.69 11.75 6.87 9.21 9.62 18.16 9.61 5.70 9.48 9.83 6.84 14.08 18.49 29.99 2.74 2.59 6.09 72 E14_Aa NovelBoundary 0 3.33 11.25 31.76 22.87 0.00 18.34 9.98 13.27 23.61 27.29 4.69 0.00 25.49 14.48 21.14 12.05 13.74 37.02 28.80 30.55 19.34 5.82 11.01 73 ER14a ExonRegion 0 7.52 14.86 59.79 31.43 8.09 37.64 11.12 44.47 52.61 32.67 12.48 6.80 7.65 15.25 14.28 10.64 12.04 55.80 27.79 46.83 25.22 17.01 25.41 74 E14_Ab KnownBoundary 0 6.67 3.35 45.92 25.60 0.00 20.84 6.05 48.55 46.96 34.22 2.21 26.11 6.82 14.13 9.39 8.72 8.13 47.30 20.61 48.39 25.58 7.65 28.34 75 ER14b ExonRegion 0 3.21 7.69 32.18 20.50 5.38 22.91 4.50 30.69 26.25 18.75 4.46 4.95 2.06 12.96 6.57 7.19 5.51 31.80 11.17 41.95 19.83 4.74 13.36 76 E14_Da KnownBoundary 0 3.04 11.38 56.80 56.50 11.88 38.16 2.25 23.37 25.84 59.23 50.43 16.81 25.65 14.30 19.78 47.51 38.99 100.61 83.96 83.35 60.17 25.60 10.76 77 E14a_E14d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78 ER14c ExonRegion 0 8.32 16.35 43.63 23.49 9.44 47.90 8.89 48.52 46.90 18.41 4.23 2.11 1.51 6.12 7.22 5.27 4.27 26.22 12.03 32.74 23.32 16.66 23.18 79 E14_Ac KnownBoundary 0 14.37 42.76 68.66 61.13 22.67 88.07 15.50 93.57 62.90 28.21 0.00 5.40 12.66 11.48 20.89 7.60 4.21 45.97 4.05 50.05 27.24 15.55 39.95 80 ER14d ExonRegion 0 8.93 31.96 73.20 47.02 9.71 81.76 8.84 85.48 46.48 24.86 0.67 3.58 4.28 6.00 7.63 4.01 8.18 33.14 17.87 40.19 27.40 15.85 35.50 81 E14_Db KnownBoundary 0 10.52 20.85 43.82 16.05 0.00 81.20 19.12 50.40 27.95 20.44 5.11 6.30 0.00 4.94 13.72 0.00 17.48 20.15 21.55 36.18 11.37 5.45 36.96 82 E14b_E14d KnownJunction 0 3.56 25.72 61.17 35.49 10.61 53.32 2.25 49.04 30.24 14.08 0.00 0.00 0.00 0.00 4.45 0.00 0.00 14.63 4.71 14.83 13.84 8.39 4.35 83 ER14e ExonRegion 0 13.02 15.43 36.81 28.58 8.95 64.83 17.49 66.92 29.89 19.70 4.32 2.41 3.24 20.16 10.60 8.45 11.37 31.52 28.26 37.82 21.19 15.78 32.39 84 E14_Ad KnownBoundary 0 33.27 25.39 37.76 27.80 31.07 94.26 26.54 72.50 36.66 26.38 0.00 0.00 20.13 17.07 20.77 15.47 12.90 36.19 12.61 43.85 31.38 21.19 58.13 85 ER14f ExonRegion 0 20.49 32.14 77.59 54.14 28.21 106.72 21.22 83.86 61.56 25.83 5.30 0.69 3.21 15.57 11.51 5.23 8.95 48.74 29.73 58.78 30.52 24.11 48.38 86 E14_Ae KnownBoundary 0 44.97 44.60 109.72 70.12 15.62 137.82 14.18 111.72 69.01 37.90 5.16 0.00 0.00 27.84 4.45 3.33 8.51 46.88 47.34 72.67 38.05 22.96 38.50 87 ER14g ExonRegion 0 22.38 33.62 76.30 54.68 30.15 128.17 25.16 102.32 64.56 27.54 4.82 4.50 1.31 13.82 9.40 7.13 3.34 56.57 39.63 61.87 38.14 24.31 51.25 88 E14_Dc KnownBoundary 0 10.82 37.69 56.92 37.19 49.15 116.75 30.56 55.08 42.01 17.51 4.58 0.00 6.82 9.06 8.90 8.29 9.35 44.19 28.61 56.18 31.94 20.21 60.69 89 E14_Dd KnownBoundary 0 13.41 46.97 68.15 36.29 16.30 76.83 18.50 108.48 61.49 22.19 2.68 0.00 0.00 16.83 8.90 8.72 11.97 64.75 21.08 43.21 24.03 17.82 15.79 90 ER14h ExonRegion 0 8.09 47.97 85.99 51.47 36.83 118.66 27.80 116.42 73.96 28.20 3.07 0.00 4.69 15.67 12.80 8.92 10.49 77.50 34.48 64.33 36.56 21.33 51.48 91 ER14i ExonRegion 0 28.00 57.69 98.09 53.61 32.59 93.29 32.27 93.30 60.12 25.64 6.54 3.65 2.46 12.21 11.49 11.87 5.62 50.32 45.82 40.82 27.23 24.48 40.73 92 ER14j ExonRegion 0 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00