Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-506M13.1 Gene 0 10.82 13.24 13.95 15.69 12.26 14.25 22.37 12.25 28.62 8.96 12.32 66.56 58.47 13.83 17.44 15.71 14.28 5.50 14.89 15.15 2.31 36.75 7.18 2 479920 Transcript 0 0.42 0.28 0.00 0.31 0.27 0.42 0.03 0.55 0.45 0.41 0.00 0.12 0.00 0.10 0.00 0.36 0.00 0.15 0.02 0.47 0.15 0.30 0.00 3 482985 Transcript 0 4.79 5.66 5.45 5.45 5.58 5.60 7.45 3.62 10.23 2.86 4.15 22.49 20.02 5.03 6.18 5.19 6.07 1.71 5.30 4.52 0.84 15.84 3.16 4 ER1a ExonRegion 0 0.00 1.13 0.00 0.00 1.48 2.03 2.20 1.43 1.02 0.00 0.00 1.98 0.00 0.74 1.14 1.65 0.00 2.55 1.77 2.36 0.00 14.83 0.00 5 E1_Da NovelBoundary 0 17.93 32.69 29.80 28.77 20.97 44.12 32.77 19.43 40.42 29.44 109.55 28.36 37.17 68.87 55.01 47.17 91.35 18.07 59.20 114.73 65.36 45.80 52.93 6 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 9 ER2a ExonRegion 0 1.41 1.95 0.00 0.84 0.00 2.93 0.22 3.86 3.16 0.59 0.00 0.87 0.00 0.69 0.00 2.53 0.00 1.08 0.11 1.81 1.05 0.89 0.00 10 E2_Ab KnownBoundary 0 25.34 12.63 16.26 8.92 7.98 27.14 26.59 9.69 19.33 7.47 38.64 44.86 8.28 2.47 12.61 17.35 13.37 9.00 4.42 3.26 5.81 15.12 0.00 11 ER2b ExonRegion 0 0.62 3.97 0.09 0.08 0.76 0.37 0.48 3.27 4.62 0.89 1.71 2.80 0.61 0.23 0.58 0.00 1.51 1.78 1.76 0.00 1.17 4.00 0.14 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER3a ExonRegion 0 1.50 0.00 0.00 1.36 1.90 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.51 0.00 0.00 0.00 15 E3_Da NovelBoundary 0 0.00 0.00 3.05 5.23 3.57 0.00 12.54 8.91 8.68 2.77 0.00 0.00 30.19 2.35 0.00 0.00 0.00 1.66 0.00 3.13 0.00 0.00 0.00 16 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E4_Aa NovelBoundary 0 10.30 0.00 0.00 5.39 3.99 15.73 6.76 4.27 4.66 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 2.39 3.84 18 ER4a ExonRegion 0 10.95 12.37 8.46 4.73 13.38 9.57 4.49 0.58 11.60 1.46 3.42 14.93 6.68 6.25 6.44 3.48 12.37 1.08 5.60 0.00 1.29 35.28 6.85 19 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER5a ExonRegion 0 2.41 0.90 5.39 0.16 2.43 0.81 0.80 0.00 1.52 2.32 8.68 0.00 0.00 7.37 6.27 2.49 6.06 0.00 0.00 0.10 0.00 5.43 2.94 21 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E5_Db NovelBoundary 0 2.96 3.35 19.78 8.06 3.74 2.61 8.52 6.98 11.40 0.00 13.27 44.11 21.43 12.71 0.00 4.36 9.54 0.00 4.61 15.28 0.00 3.12 0.00 23 ER5b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER6a ExonRegion 0 17.78 21.62 24.22 27.98 20.09 24.04 40.21 21.16 49.78 15.69 21.47 120.03 106.97 23.90 30.65 27.63 24.05 9.19 26.20 27.10 3.73 59.75 12.10 25 IG41_SR3 SilentIntergenicRegion 0 0.00 1.20 0.00 1.15 0.00 14.55 2.25 0.00 2.09 0.00 4.49 2.02 0.00 2.42 1.16 5.05 0.00 7.29 5.45 8.56 6.24 5.86 16.64