Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LCOR Gene 0 32.55 53.96 33.45 43.52 101.35 100.49 135.13 140.58 108.05 55.85 40.31 73.12 71.21 47.52 23.59 34.23 39.87 33.44 26.40 94.53 12.92 25.66 16.85 2 371103 Transcript 0 12.80 7.46 1.61 3.86 12.52 13.08 24.70 15.33 16.48 9.73 17.23 10.18 19.63 14.43 12.00 14.13 26.74 22.34 12.39 28.68 12.61 3.60 9.51 3 371097 Transcript 0 13.63 21.06 13.16 18.92 41.77 42.34 51.04 55.95 40.51 23.06 11.95 22.15 22.85 12.76 9.70 11.48 10.45 10.85 10.43 28.71 3.67 8.64 5.07 4 356016 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.43 2.47 4.63 0.00 0.00 4.71 0.00 0.00 4.11 4.39 3.86 3.07 3.15 0.00 0.00 5 493486 Transcript 0 3.04 2.83 3.93 1.80 11.21 19.70 23.94 29.12 19.53 9.13 9.95 12.15 7.47 12.36 0.00 4.36 9.16 18.53 9.04 26.46 0.00 8.39 8.37 6 469510 Transcript 0 7.00 5.91 9.22 7.09 8.04 5.72 23.69 13.36 8.81 4.91 1.15 9.20 13.89 1.25 9.85 7.94 7.32 5.28 1.47 10.18 0.66 1.55 1.91 7 498444 Transcript 0 4.15 4.70 3.88 4.38 5.47 10.19 11.63 5.31 11.59 5.29 33.94 57.39 25.40 43.82 15.47 23.90 27.03 21.39 22.59 48.07 20.46 12.04 7.46 8 463415 Transcript 0 3.11 0.00 0.00 1.43 0.00 2.90 1.85 0.00 3.04 0.00 0.00 0.00 0.00 0.00 0.00 4.36 4.77 4.93 3.67 3.00 0.00 0.00 3.76 9 IG36_AR1 ActiveIntergenicRegion 0 4.87 5.71 9.05 6.37 6.90 3.90 12.80 3.62 4.94 5.25 4.38 14.96 5.47 7.83 9.83 8.80 2.04 3.27 4.35 11.73 0.77 3.63 0.20 10 IG36_SR2 SilentIntergenicRegion 0 2.65 2.03 10.35 4.09 5.35 3.94 2.91 6.83 6.05 2.18 0.00 42.86 4.69 2.76 16.68 7.58 0.00 0.00 12.74 10.00 0.00 1.88 0.00 11 IG36_AR2 ActiveIntergenicRegion 0 3.82 10.92 9.00 5.89 8.61 14.07 12.53 11.02 5.75 4.96 3.21 18.28 10.63 2.79 6.83 6.41 4.57 3.31 6.06 9.52 0.00 2.68 0.00 12 ER1a ExonRegion 0 25.60 14.92 3.22 4.30 17.57 26.15 45.51 12.67 26.42 14.40 26.78 20.36 31.96 28.86 19.55 28.26 44.87 27.73 24.78 45.67 18.92 7.20 19.01 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 3.43 7.47 0.00 3.89 17.99 6.54 5.05 7.69 0.00 7.30 0.00 4.45 0.00 8.60 16.95 0.00 11.70 6.30 0.00 0.00 14 E1a_E4a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.08 9.57 4.66 1.26 7.21 6.30 0.00 2.35 4.45 4.10 8.70 4.93 0.00 3.26 8.90 0.00 0.00 15 ER2a ExonRegion 0 2.61 0.09 0.00 4.37 2.83 6.78 8.67 3.56 7.80 2.37 2.65 0.00 0.00 1.70 2.43 9.81 2.03 10.68 7.59 12.69 4.95 0.00 2.42 16 E2_Ab KnownBoundary 0 0.00 0.00 0.00 7.29 3.65 7.95 8.66 6.04 8.42 4.46 9.79 0.00 0.00 0.00 0.00 7.43 0.00 16.42 0.00 15.15 2.66 0.00 4.27 17 ER2b ExonRegion 0 2.91 1.36 0.00 1.97 4.20 8.79 7.47 1.22 5.30 2.48 5.34 2.53 0.00 2.86 0.00 7.22 5.32 4.49 2.65 9.46 3.46 0.00 3.18 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.43 2.47 4.63 0.00 0.00 4.71 0.00 0.00 4.11 4.39 3.86 3.07 3.15 0.00 0.00 19 E2b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER2c ExonRegion 0 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 21 E3_Aa NovelBoundary 0 0.00 12.04 2.60 0.00 3.31 4.77 8.66 8.58 11.52 0.00 0.00 0.00 0.00 0.00 0.00 18.46 8.70 11.40 0.00 11.38 5.68 0.00 3.93 22 ER3a ExonRegion 0 9.38 4.73 4.50 3.78 6.26 13.60 16.37 18.45 30.59 13.42 33.85 20.59 31.18 30.97 12.86 29.48 64.41 23.82 26.90 52.90 21.89 8.19 21.79 23 E3_Da NovelBoundary 0 0.00 2.89 5.50 8.96 0.00 12.61 7.73 4.60 11.28 0.00 2.53 0.00 6.01 0.00 4.45 24.44 16.55 5.84 4.33 14.76 2.72 0.00 0.00 24 E3a_E4a KnownJunction 0 3.78 3.35 5.00 7.76 3.90 21.07 6.76 24.23 61.66 21.01 32.69 48.32 25.81 46.32 18.30 44.77 52.73 36.06 43.48 92.17 23.04 19.53 13.06 25 I3 Intron 0 9.15 9.21 7.13 8.18 12.62 6.42 31.73 11.96 9.43 4.02 1.30 11.59 16.15 1.33 7.00 8.79 8.07 3.72 2.80 12.88 1.10 0.51 3.96 26 I3_SR1 SilentIntronRegion 0 9.58 9.22 8.93 8.51 13.79 6.96 37.87 14.09 11.23 4.98 1.17 8.33 15.61 1.20 8.61 10.94 9.52 3.77 3.61 13.87 1.29 0.39 4.62 27 I3_AR1 ActiveIntronRegion 1 20.02 9.28 14.41 10.57 25.51 8.60 36.95 19.60 15.80 6.42 1.17 15.72 38.16 1.56 8.69 10.42 9.49 2.14 2.89 21.86 1.67 0.95 2.12 28 I3_SR2 SilentIntronRegion 1 13.31 11.92 10.67 14.03 19.49 10.83 43.07 18.35 14.30 5.59 2.26 17.45 23.87 1.90 11.16 11.66 11.43 5.92 3.42 19.30 1.09 0.86 5.96 29 I3_AR3 ActiveIntronRegion 1 17.29 18.19 8.92 16.09 22.96 15.60 52.12 18.69 11.78 2.87 0.55 9.56 22.23 2.03 6.18 9.32 12.42 4.66 5.41 12.60 1.25 0.30 3.95 30 I3_AR4 ActiveIntronRegion 0 10.98 7.01 6.25 8.97 16.25 7.90 39.44 9.33 9.47 2.04 1.52 10.67 17.71 2.27 6.36 12.60 12.68 7.90 1.69 16.07 1.17 0.28 3.46 31 I3_SR4 SilentIntronRegion 0 6.65 11.02 4.84 8.74 13.18 5.74 27.19 13.08 8.63 4.34 1.11 10.58 19.29 2.47 4.99 10.25 7.52 5.21 2.34 12.89 1.55 0.63 3.35 32 I3_AR5 ActiveIntronRegion 0 15.67 13.98 6.21 5.98 17.79 5.96 38.31 11.29 9.73 2.71 1.17 4.70 15.86 1.88 5.93 6.74 4.74 3.48 1.93 9.48 0.67 0.31 4.22 33 I3_AR6 ActiveIntronRegion 0 18.37 6.87 6.58 3.36 15.33 2.05 17.05 8.36 3.88 1.91 0.96 8.39 7.81 0.19 2.03 2.46 3.28 2.59 2.64 7.27 1.30 0.00 2.43 34 E4_Ac NovelBoundary 0 6.82 5.33 3.10 8.36 10.95 24.42 20.18 43.91 55.47 14.24 11.27 13.35 0.00 4.65 19.53 19.23 17.48 34.49 9.32 57.21 2.90 2.57 25.87 35 ER4a ExonRegion 0 5.14 6.68 4.73 11.03 16.05 41.30 17.21 40.25 65.93 19.12 26.05 63.09 36.85 61.79 32.05 51.94 52.34 48.57 39.13 104.56 22.46 16.07 29.65 36 ER4b ExonRegion 0 6.35 8.13 3.68 16.35 21.41 38.51 22.51 48.40 70.40 17.20 28.99 69.27 46.90 73.09 37.72 62.41 56.12 53.58 31.85 114.89 22.04 20.84 38.18 37 ER4c ExonRegion 0 4.18 8.41 4.99 22.55 27.49 30.34 28.86 61.71 72.87 22.55 57.81 79.80 89.32 73.97 42.27 76.13 65.04 66.94 21.36 157.54 22.79 25.71 38.44 38 E4a_E5a KnownJunction 0 3.19 8.88 7.51 33.33 35.65 16.52 42.57 79.31 70.66 30.17 77.81 96.33 134.41 77.93 30.90 81.69 82.66 80.75 21.65 206.64 37.87 34.23 44.13 39 ER5a ExonRegion 0 14.84 17.39 16.54 26.75 41.47 57.65 94.15 89.71 75.60 43.30 66.66 88.05 138.06 82.02 39.46 83.96 86.28 91.05 40.10 190.80 38.29 40.29 46.91 40 E5_Da KnownBoundary 0 12.52 14.60 6.89 21.58 24.45 8.01 37.71 16.02 13.02 5.51 0.00 0.00 6.66 0.00 6.30 0.00 13.84 3.77 9.60 18.54 0.00 0.00 7.60 41 E5a_E6a KnownJunction 0 3.26 5.99 7.81 5.09 12.22 30.15 55.60 51.30 47.13 30.62 50.33 61.82 102.10 57.98 18.67 43.24 67.04 59.44 12.71 124.45 19.83 28.23 34.57 42 E5a_E7a KnownJunction 0 3.04 2.83 3.93 1.80 11.21 19.70 23.94 29.12 19.53 9.13 9.95 12.15 7.47 12.36 0.00 4.36 9.16 18.53 9.04 26.46 0.00 8.39 8.37 43 ER5b ExonRegion 0 7.00 5.91 9.22 7.09 8.04 5.72 23.69 13.36 8.81 4.91 1.15 9.20 13.89 1.25 9.85 7.94 7.32 5.28 1.47 10.18 0.66 1.55 1.91 44 E5_Db NovelBoundary 1 234.34 323.89 154.05 123.76 275.30 172.40 299.60 126.22 161.98 95.63 116.45 28.81 100.32 26.96 98.65 233.27 226.27 192.63 271.54 220.39 119.66 110.83 287.93 45 I5_AR2 ActiveIntronRegion 0 7.17 5.60 1.96 7.34 7.74 4.47 27.73 7.70 4.34 2.90 2.00 9.83 12.95 0.78 3.38 8.32 10.94 2.79 4.09 10.95 2.15 0.30 3.01 46 I5_SR2 SilentIntronRegion 0 5.64 5.91 2.73 5.41 6.78 5.26 28.93 6.09 6.25 1.46 1.09 10.51 10.18 0.43 3.45 6.90 11.60 3.55 3.15 11.93 0.82 0.23 1.71 47 ER6a ExonRegion 0 3.91 8.72 11.42 12.40 23.24 22.63 43.59 60.95 59.42 31.42 58.60 120.61 109.60 79.69 25.46 90.42 82.50 85.32 33.08 130.76 37.79 34.56 28.77 48 E6a_E7a KnownJunction 0 14.08 3.35 14.87 10.32 37.10 18.11 35.99 84.49 71.21 31.70 63.07 144.80 95.77 83.94 23.61 129.03 124.92 95.92 24.28 185.74 32.37 55.11 80.07 49 I6_AR1 ActiveIntronRegion 0 0.25 1.92 0.65 0.45 0.96 0.44 3.68 3.66 1.22 0.72 0.46 7.18 15.94 0.92 0.90 1.59 3.36 0.38 0.00 6.19 0.00 1.00 0.06 50 E7_Aa NovelBoundary 0 0.00 0.00 2.84 1.80 0.00 0.00 2.25 2.09 0.00 2.31 0.00 7.50 0.00 0.00 0.00 4.36 4.58 3.40 0.00 0.00 11.61 0.00 0.00 51 ER7a ExonRegion 1 10.88 18.68 14.64 14.04 23.16 36.01 68.06 70.15 81.97 29.35 73.30 144.33 121.35 112.42 21.60 100.55 105.38 88.18 44.60 156.77 44.30 36.77 44.99 52 E7_Da KnownBoundary 0 10.15 22.69 7.33 5.23 16.55 23.05 74.06 65.80 50.98 10.66 48.59 111.79 57.63 83.23 26.45 72.03 103.04 77.02 16.85 124.32 57.14 23.15 6.74 53 E7_Ab KnownBoundary 0 17.48 18.22 11.41 9.12 20.46 16.35 72.47 64.90 49.80 23.18 43.33 96.78 83.92 50.50 20.64 50.24 81.53 86.68 41.04 127.45 21.31 24.13 22.79 54 ER7b ExonRegion 0 14.55 26.31 12.94 10.48 23.91 27.16 88.37 95.50 76.50 24.73 70.55 152.07 107.58 109.02 27.74 86.01 111.41 108.09 36.63 168.48 58.95 34.51 24.78 55 ER7c ExonRegion 0 10.01 17.32 10.95 9.51 21.47 28.46 59.59 66.92 71.70 27.78 48.51 122.83 63.46 82.63 20.13 60.98 83.58 94.30 37.79 155.40 43.77 27.47 33.79 56 E7_Ac KnownBoundary 1 7.56 15.00 9.25 11.52 19.02 27.77 53.75 47.52 56.37 21.95 50.59 74.57 58.92 85.47 9.64 52.81 89.01 117.48 55.15 111.15 48.93 29.39 45.67 57 ER7d ExonRegion 1 4.62 13.56 10.26 8.39 16.02 41.85 42.46 43.72 60.97 21.93 60.40 84.24 97.71 96.86 21.48 73.60 92.29 111.17 33.05 141.16 42.76 27.17 26.14 58 E7b_E8a KnownJunction 1 3.11 18.42 12.77 7.39 18.93 42.42 76.00 46.04 65.68 30.62 61.17 105.03 79.54 87.59 13.35 69.30 118.37 105.17 18.45 136.02 56.03 22.35 30.90 59 ER8a ExonRegion 1 5.49 13.80 5.66 7.79 11.81 31.70 46.75 48.43 69.31 25.31 54.06 83.50 51.94 100.25 19.01 63.71 103.73 104.83 34.53 137.82 53.01 29.12 21.40 60 E8a_E9a KnownJunction 0 0.00 0.00 1.48 4.03 7.72 32.25 28.35 42.06 58.65 19.56 21.64 29.56 41.39 51.03 10.38 51.87 39.93 88.21 22.49 76.38 22.80 23.21 11.87 61 E8a_E9b KnownJunction 0 3.11 0.00 0.00 1.43 0.00 2.90 1.85 0.00 3.04 0.00 0.00 0.00 0.00 0.00 0.00 4.36 4.77 4.93 3.67 3.00 0.00 0.00 3.76 62 E8a_E10a KnownJunction 0 6.37 5.85 3.67 3.66 7.81 15.16 6.32 4.72 7.20 4.43 28.69 61.52 13.64 37.91 14.09 14.36 25.62 13.80 16.94 50.43 22.98 2.69 0.00 63 ER9a ExonRegion 1 9.90 26.02 13.08 15.26 37.84 44.94 83.23 59.54 68.62 24.99 36.84 55.38 45.73 46.16 7.49 27.94 37.09 33.35 16.98 92.96 14.68 14.15 15.07 64 E9_Ab KnownBoundary 0 56.45 30.85 49.73 28.37 53.14 59.23 171.79 106.09 105.35 42.33 33.90 57.92 66.55 33.96 13.35 27.09 40.21 26.61 7.62 76.32 8.77 15.00 11.35 65 ER9b ExonRegion 0 82.46 44.88 44.61 37.09 74.04 49.98 129.34 160.16 117.40 38.61 36.20 55.69 56.51 34.25 8.51 23.52 31.50 30.91 15.74 101.78 11.81 29.13 12.57 66 E9_Da KnownBoundary 0 68.38 63.28 45.74 41.69 64.35 36.46 146.18 216.83 126.56 52.27 54.07 96.33 92.85 50.44 22.25 41.44 48.81 12.10 26.26 118.82 6.12 34.90 3.67 67 ER9c ExonRegion 0 60.50 67.50 50.99 52.12 153.96 71.97 168.08 192.96 123.98 47.28 30.45 86.87 100.85 35.31 16.86 29.67 32.21 17.64 19.07 77.50 3.14 36.30 11.10 68 E9_Db KnownBoundary 1 15.93 50.85 13.42 7.72 136.16 77.34 124.32 47.85 32.81 13.89 4.47 74.87 72.72 20.90 4.45 7.43 3.65 1.87 4.80 17.07 5.50 11.82 4.10 69 ER9d ExonRegion 1 14.11 21.50 6.80 5.19 51.99 22.79 46.34 34.86 22.79 7.81 5.02 37.52 31.49 9.82 4.14 4.39 3.38 2.95 5.76 11.75 1.78 8.53 5.17 70 E9_Dc KnownBoundary 0 29.86 34.80 8.90 8.46 85.74 20.50 67.57 58.78 28.24 8.25 11.58 50.42 39.93 21.54 8.90 15.81 8.60 5.72 16.00 30.74 0.00 17.64 8.62 71 ER9e ExonRegion 0 51.39 84.17 52.63 71.30 164.26 162.59 195.49 220.23 152.99 88.25 45.14 88.60 91.42 49.33 36.38 36.09 39.78 30.89 34.13 102.16 9.73 34.57 17.84 72 ER10a ExonRegion 0 1.92 3.54 4.10 5.09 3.12 5.22 16.95 5.89 15.97 6.15 39.20 53.26 37.17 49.73 16.85 33.45 28.43 28.98 28.24 45.71 17.94 21.38 14.92 73 IG37 Intergenic 0 7.20 6.48 2.72 3.02 6.82 7.01 13.50 6.02 12.52 4.72 25.06 39.02 47.66 46.71 10.48 32.84 18.94 20.31 18.28 38.43 14.99 13.73 13.10 74 IG37_AR1 ActiveIntergenicRegion 0 7.26 6.54 2.74 3.05 6.88 7.07 13.61 6.07 12.62 4.76 25.27 39.35 48.04 47.10 10.56 33.08 19.10 20.47 18.43 38.75 15.10 13.84 13.21