Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF518A Gene 0 59.07 59.33 32.06 41.83 63.98 99.58 72.91 47.06 47.18 40.91 86.07 122.98 133.91 59.02 27.93 56.54 56.27 39.73 28.66 67.64 17.75 27.60 17.53 2 424593 Transcript 0 0.00 1.64 0.18 1.03 0.00 0.00 0.06 0.00 0.29 0.00 1.20 0.00 0.00 1.31 0.00 1.06 0.71 1.41 1.74 2.83 0.10 0.35 0.70 3 488700 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 316045 Transcript 0 1.89 7.86 3.36 0.88 10.10 8.49 11.22 9.57 4.82 5.56 19.37 19.43 36.44 12.15 0.00 27.98 26.32 8.71 0.00 20.71 6.70 6.09 5.72 5 478086 Transcript 0 4.80 4.17 0.89 0.98 3.33 4.26 5.34 3.77 3.93 1.15 15.31 19.77 10.80 13.46 1.66 20.34 12.59 16.29 4.06 11.53 7.64 7.02 8.80 6 484770 Transcript 0 4.91 3.66 3.58 4.57 2.99 2.25 3.78 5.34 4.42 3.21 5.61 10.58 10.29 7.51 4.16 7.65 5.94 4.67 4.51 12.66 4.47 0.74 2.90 7 371192 Transcript 0 5.69 6.92 4.19 5.90 7.53 14.08 16.30 6.26 11.69 4.70 15.35 21.05 20.98 9.35 1.00 10.19 13.38 5.53 4.13 17.75 3.52 4.47 5.69 8 ER1a ExonRegion 0 0.00 0.39 0.35 0.00 0.00 0.00 0.13 0.00 0.59 0.00 2.39 0.00 0.00 2.63 0.00 2.12 1.41 2.82 3.49 2.53 0.21 0.69 1.40 9 ER1b ExonRegion 0 1.32 1.22 1.54 0.63 0.23 0.11 0.40 2.60 1.69 0.00 7.85 2.22 5.61 7.14 5.75 10.75 8.27 10.88 5.09 8.12 5.40 1.85 3.98 10 E1_Ac KnownBoundary 0 0.00 0.00 4.97 0.00 3.74 0.00 0.00 2.01 0.00 0.00 9.84 0.00 6.01 5.12 5.44 7.86 8.70 7.13 8.09 12.14 6.30 0.00 7.43 11 ER1c ExonRegion 0 1.16 0.00 1.40 0.00 1.06 1.81 0.00 1.19 1.82 0.10 7.00 1.96 3.03 9.50 2.68 9.94 6.99 9.06 7.26 6.15 3.72 1.14 3.95 12 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 2.16 0.00 12.50 0.00 0.00 0.00 0.00 1.99 4.14 0.00 6.30 0.00 0.00 13 ER2a ExonRegion 0 14.41 7.46 0.93 1.15 9.98 6.99 9.96 3.79 3.43 0.87 7.55 2.89 3.35 8.43 4.97 40.76 15.04 16.92 12.19 17.46 11.54 10.09 13.42 14 E2_Da NovelBoundary 0 0.00 0.00 1.63 0.00 0.00 0.00 7.91 13.76 1.56 1.61 10.16 0.00 0.00 0.00 4.45 7.01 3.55 21.72 0.00 2.56 5.56 0.00 3.93 15 E2a_E4a KnownJunction 0 0.00 5.06 1.74 1.80 0.00 0.00 1.72 7.52 6.94 1.58 0.00 0.00 7.63 2.71 0.00 0.00 0.00 19.19 0.00 2.62 2.41 5.51 0.00 16 I2 Intron 0 1.73 1.48 3.49 1.29 2.44 7.34 4.58 3.28 3.35 4.51 8.63 3.25 1.83 12.63 4.80 18.68 14.72 15.31 8.70 14.73 9.83 1.14 5.35 17 I2_AR1 ActiveIntronRegion 0 1.74 1.49 3.50 1.30 2.45 7.37 4.60 3.30 3.36 4.53 8.65 3.26 1.84 12.68 4.82 18.73 14.78 15.36 8.73 14.78 9.86 1.14 5.37 18 E3_Aa NovelBoundary 0 0.00 11.64 4.73 3.26 4.33 31.74 16.69 1.89 6.45 4.30 22.22 0.00 0.00 30.67 10.38 4.36 30.95 35.15 8.56 29.53 24.59 0.00 7.51 19 ER3a ExonRegion 0 2.09 3.60 1.36 2.42 1.90 3.25 0.94 5.39 3.88 3.24 8.07 2.80 4.04 14.12 5.92 15.75 9.35 10.74 9.03 18.90 12.49 2.21 7.28 20 E3a_E4a KnownJunction 0 3.11 0.00 2.63 1.96 0.00 0.00 0.00 0.00 0.00 1.67 2.21 0.00 0.00 4.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 I3 Intron 0 5.17 7.40 3.32 3.75 5.10 4.10 10.54 8.29 6.97 4.58 7.03 26.81 22.13 5.98 4.16 7.26 8.36 3.73 5.70 17.69 1.45 1.18 1.49 22 I3_AR1 ActiveIntronRegion 0 5.18 7.40 3.32 3.76 5.11 4.10 10.55 8.30 6.97 4.59 7.04 26.84 22.15 5.99 4.16 7.27 8.37 3.74 5.70 17.71 1.45 1.18 1.49 23 E4_Aa NovelBoundary 0 7.56 3.09 13.51 5.33 4.33 0.00 16.08 22.55 6.02 11.34 4.79 31.81 41.23 4.59 8.90 0.00 4.21 4.48 4.80 23.65 0.00 2.45 0.00 24 ER4a ExonRegion 0 13.32 12.94 7.96 7.49 13.44 6.45 22.65 14.05 8.36 7.49 39.86 38.86 47.84 38.54 9.56 19.06 31.26 23.24 4.61 41.18 13.69 3.33 16.34 25 E4_Da KnownBoundary 0 7.41 6.71 2.78 6.06 19.52 11.58 25.31 7.72 6.57 3.33 2.11 12.60 26.78 0.00 11.74 4.27 0.00 3.73 4.61 17.45 0.00 0.00 3.76 26 E4a_E5a KnownJunction 0 3.78 5.72 1.24 1.93 3.48 8.63 0.00 1.93 3.04 0.00 19.58 18.91 5.84 7.06 0.00 0.00 17.86 4.77 0.00 12.02 9.14 0.00 0.00 27 E4a_E5b KnownJunction 0 10.74 3.35 4.20 1.90 3.57 2.21 1.81 11.54 2.95 2.98 48.38 49.22 20.62 39.20 10.75 26.23 28.61 12.19 4.80 20.13 21.07 9.37 16.56 28 ER4b ExonRegion 1 9.52 7.39 6.75 9.32 7.09 3.51 10.41 10.62 9.38 4.73 6.56 28.93 26.85 3.69 6.54 7.21 8.45 3.28 4.52 19.10 0.91 0.00 1.41 29 E4_Db NovelBoundary 0 46.38 8.95 19.34 12.79 7.56 0.00 28.88 17.05 8.59 1.61 4.90 18.16 25.49 7.95 0.00 7.43 9.16 8.08 4.80 22.31 0.00 0.00 0.00 30 E5_Aa NovelBoundary 0 3.26 25.19 6.42 17.88 12.22 2.56 4.06 17.54 3.59 4.84 12.32 43.96 19.80 12.07 5.81 15.81 0.00 2.49 0.00 35.28 11.55 3.12 0.00 31 E5_Ab NovelBoundary 0 11.26 23.48 10.02 6.99 6.96 15.56 16.78 9.24 11.60 6.61 11.16 26.56 20.13 9.71 10.38 0.00 13.37 14.01 0.00 26.72 3.09 0.00 3.59 32 ER5a ExonRegion 1 7.94 11.18 5.69 3.16 2.77 9.76 6.95 5.31 8.60 4.92 14.36 20.56 13.74 10.56 2.28 0.85 16.74 8.78 0.11 19.76 8.74 0.22 1.89 33 ER5b ExonRegion 1 11.33 14.45 7.33 5.03 7.29 13.57 12.53 18.99 16.44 7.87 70.86 94.98 45.10 60.44 11.83 32.10 52.87 23.14 7.25 43.63 15.77 11.57 17.44 34 E5_Da NovelBoundary 0 8.82 17.43 9.25 12.95 0.00 0.00 17.62 15.07 5.87 9.29 0.00 5.85 25.16 0.00 0.00 0.00 13.00 6.22 12.14 41.93 0.00 0.00 0.00 35 E5a_E6a KnownJunction 0 3.63 0.00 3.25 3.73 4.33 8.57 3.89 8.87 8.22 4.46 30.59 12.60 31.98 30.67 0.00 23.58 0.00 11.11 4.61 26.01 5.50 16.23 7.00 36 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 5.79 4.33 0.00 1.42 0.99 38.38 56.42 21.43 29.25 0.00 20.25 22.72 12.77 0.00 14.51 8.96 5.45 12.98 37 E5a_E7c NovelJunction 0 0.00 3.35 0.00 4.03 0.00 0.00 0.00 7.39 3.59 0.00 1.95 0.00 0.00 0.00 0.00 0.00 12.81 0.00 4.24 0.00 0.00 0.00 0.00 38 I5 Intron 0 10.49 14.97 9.42 12.64 9.91 4.69 20.87 11.18 7.81 5.16 8.18 23.91 34.88 7.59 6.47 13.50 13.45 8.17 9.16 25.24 4.27 2.31 3.95 39 I5_SR1 SilentIntronRegion 0 3.54 8.60 6.26 6.31 7.47 4.24 17.20 4.52 7.04 3.68 7.55 21.17 22.34 6.64 6.65 10.90 11.85 4.92 8.38 19.52 2.63 1.33 1.64 40 I5_AR1 ActiveIntronRegion 0 2.96 5.97 3.93 4.19 3.27 1.97 17.13 6.93 5.80 5.18 8.95 19.92 34.31 8.77 3.30 15.30 12.20 8.11 11.13 25.24 7.40 0.00 3.43 41 I5_SR2 SilentIntronRegion 0 3.38 4.46 4.31 11.36 7.50 9.27 21.37 6.88 6.75 4.71 4.92 24.35 36.68 6.73 4.68 12.18 21.54 6.41 12.42 26.20 8.42 0.00 4.37 42 I5_AR2 ActiveIntronRegion 1 3.49 16.14 5.98 9.51 1.91 3.37 13.59 6.24 6.69 5.38 5.60 38.26 61.66 5.76 7.14 13.06 10.81 3.51 11.30 30.57 2.70 1.20 2.45 43 I5_SR3 SilentIntronRegion 0 6.74 24.58 4.67 5.80 3.50 3.29 17.42 6.68 7.28 4.88 7.82 34.39 36.14 4.52 5.48 10.66 15.55 3.81 12.56 21.06 3.84 2.75 2.63 44 I5_AR3 ActiveIntronRegion 0 17.27 25.78 20.49 24.56 19.49 7.75 23.92 11.26 8.05 5.48 7.89 18.72 54.71 5.99 8.23 17.76 12.99 5.90 5.57 26.97 4.81 2.73 3.42 45 I5_SR4 SilentIntronRegion 0 21.36 21.91 10.92 15.10 13.67 4.88 25.36 14.08 9.25 6.18 6.60 23.20 31.31 6.81 8.32 10.33 10.35 5.14 7.17 25.27 3.10 2.34 4.75 46 I5_AR4 ActiveIntronRegion 0 16.74 10.79 15.80 25.24 14.12 5.93 28.92 18.95 10.77 4.91 11.07 19.78 39.16 8.25 9.49 15.20 15.96 9.93 8.75 32.08 2.96 3.06 3.70 47 I5_SR5 SilentIntronRegion 0 7.50 7.79 9.09 11.97 10.97 4.95 23.09 11.99 7.44 4.34 8.90 24.09 36.18 8.17 4.95 14.44 12.60 9.44 8.16 27.51 4.53 1.86 4.17 48 I5_AR5 ActiveIntronRegion 0 6.73 13.04 11.64 13.27 11.55 6.16 23.90 12.45 8.62 5.51 14.87 19.61 14.19 10.65 5.22 29.42 21.87 23.93 16.14 33.39 14.37 3.49 7.63 49 I5_SR6 SilentIntronRegion 0 4.81 8.43 6.96 5.43 5.48 1.05 7.50 8.22 3.73 3.04 3.99 15.65 30.95 8.77 3.10 5.80 9.44 6.20 3.21 10.24 1.25 2.37 3.39 50 I5_AR6 ActiveIntronRegion 0 2.12 21.99 12.09 12.70 19.58 1.54 14.74 24.61 10.37 8.96 15.77 5.81 28.26 19.53 8.78 19.94 18.76 21.44 17.44 31.07 3.83 8.01 10.82 51 I5_AR7 ActiveIntronRegion 0 9.31 18.10 10.61 19.78 10.34 5.29 21.42 22.31 9.33 11.56 16.74 22.58 35.00 16.79 7.40 26.54 20.34 29.89 16.68 34.13 5.57 5.91 6.37 52 E6_Aa NovelBoundary 0 24.82 39.40 8.57 36.89 4.16 5.51 17.53 19.88 12.82 8.97 24.48 48.47 45.94 20.25 15.95 30.59 34.22 16.13 27.67 29.98 13.04 6.25 4.01 53 ER6a ExonRegion 1 14.55 21.17 10.88 16.40 8.70 11.65 17.85 17.17 16.24 15.48 41.55 37.96 48.73 41.43 6.47 69.48 35.54 44.21 19.75 43.10 19.73 6.98 10.60 54 E6_Da NovelBoundary 0 17.71 21.58 26.37 32.56 4.24 20.39 22.21 41.53 18.84 14.64 26.74 39.01 59.90 7.89 9.52 31.36 21.51 39.42 22.59 51.52 16.80 4.90 0.00 55 E6a_E7a KnownJunction 0 0.00 8.49 0.00 0.00 0.00 10.22 6.23 2.55 4.98 5.91 17.06 6.45 61.68 31.84 0.00 7.35 15.90 11.48 0.00 12.59 5.87 0.00 3.41 56 E6a_E7c KnownJunction 0 0.00 2.89 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 0.00 0.00 0.00 57 I6 Intron 0 18.70 17.82 9.99 15.73 10.79 15.20 29.65 12.88 14.39 7.23 17.56 34.07 53.51 13.57 9.75 17.87 17.23 15.60 9.93 36.59 6.87 8.20 5.38 58 I6_AR1 ActiveIntronRegion 0 13.22 16.29 11.02 12.68 9.55 9.54 26.77 13.08 10.37 6.06 12.85 22.08 40.86 14.52 10.99 22.39 20.00 19.43 12.63 28.94 8.23 6.41 7.21 59 I6_SR1 SilentIntronRegion 0 31.57 18.61 13.74 25.01 12.43 20.59 40.50 20.44 22.32 11.14 30.00 53.17 67.75 15.12 11.71 18.19 21.40 18.47 11.92 54.70 9.23 10.75 6.02 60 I6_AR2 ActiveIntronRegion 0 20.50 26.20 7.09 16.14 13.57 20.61 31.87 9.68 13.82 6.51 19.27 30.42 59.77 14.15 9.81 16.50 15.79 12.78 6.76 36.88 5.12 6.86 4.39 61 I6_SR2 SilentIntronRegion 1 5.28 10.59 7.52 8.50 7.08 9.39 12.40 3.19 14.44 4.49 3.83 30.57 46.71 10.53 3.80 8.86 5.41 5.82 4.47 21.12 0.75 10.42 2.09 62 I6_AR3 ActiveIntronRegion 1 4.26 8.55 1.07 1.35 7.22 13.20 13.59 0.98 4.93 2.48 1.75 29.77 49.33 5.34 2.46 8.29 4.14 3.87 3.32 18.35 1.98 8.04 0.29 63 E7_Aa NovelBoundary 0 3.78 9.21 1.83 11.05 15.45 28.17 32.19 1.64 5.93 8.89 20.95 62.72 34.90 2.94 4.45 21.36 4.77 19.23 23.34 61.68 9.39 3.00 17.33 64 E7_Ab NovelBoundary 1 23.93 11.25 8.75 9.62 16.55 32.59 44.56 10.47 9.55 8.97 46.17 48.62 73.37 40.56 0.00 35.89 33.85 18.90 22.49 46.28 19.09 14.08 22.71 65 ER7a ExonRegion 1 8.58 10.05 1.23 9.39 10.55 24.15 16.26 12.20 8.58 11.15 58.31 55.80 72.70 56.48 0.32 41.44 46.03 21.35 12.03 41.96 22.53 9.49 24.31 66 ER7b ExonRegion 1 14.17 22.62 4.94 11.69 30.65 40.62 38.31 16.24 16.66 14.18 72.28 66.91 105.74 51.87 4.75 55.57 77.42 21.89 14.19 67.76 26.38 18.94 26.43 67 E7_Da KnownBoundary 0 3.48 13.16 0.00 13.22 20.12 27.71 29.90 5.09 11.37 9.43 31.06 37.51 58.11 24.90 4.45 8.63 41.42 2.57 9.60 33.43 8.83 5.94 7.85 68 E7a_E7c KnownJunction 0 3.78 15.72 6.71 1.76 20.20 16.98 22.43 19.14 9.64 11.12 36.06 38.86 66.07 19.13 0.00 55.97 52.64 17.41 0.00 41.42 13.41 12.19 11.44 69 E7_Db KnownBoundary 0 3.78 15.39 5.09 12.32 3.90 5.45 32.15 7.35 11.78 6.63 25.22 37.66 32.47 17.95 4.45 20.17 41.89 11.23 12.71 15.85 5.13 6.25 4.35 70 E7b_E7c KnownJunction 0 3.26 3.35 1.36 0.00 0.00 0.00 0.00 0.00 3.07 0.00 4.53 0.00 6.98 16.72 0.00 4.02 4.77 0.00 0.00 0.00 0.00 0.00 0.00 71 ER7c ExonRegion 1 6.64 18.21 4.51 15.43 12.89 20.01 33.64 6.84 14.09 8.50 36.99 43.10 47.75 33.37 5.54 22.29 62.27 9.41 11.29 32.59 8.11 8.33 8.01 72 ER7d ExonRegion 0 11.38 13.83 8.39 11.80 13.87 26.11 31.28 8.87 20.50 9.40 30.69 42.09 39.88 16.89 1.99 20.38 26.76 11.05 8.27 34.08 7.03 7.79 11.38 73 E7_Ac KnownBoundary 0 22.89 34.93 12.48 21.51 19.78 22.26 45.22 6.04 24.94 11.55 29.74 31.51 55.19 4.77 0.00 12.56 34.78 19.36 4.24 49.02 8.59 3.12 23.90 74 ER7e ExonRegion 1 21.79 37.10 15.23 18.55 27.29 50.92 53.99 18.74 38.77 22.65 92.43 153.86 113.79 62.90 5.34 73.58 65.98 45.79 7.51 82.80 32.43 13.05 32.95 75 E7_Dc NovelBoundary 1 14.08 41.11 7.36 15.68 22.92 21.01 61.70 17.21 39.76 32.93 71.44 139.70 113.14 87.12 10.01 39.99 67.79 27.36 15.72 79.77 24.34 13.35 19.55 76 E7d_E8a KnownJunction 1 10.96 30.26 6.36 17.21 28.61 55.14 54.54 18.89 39.64 24.44 84.86 117.34 132.13 66.04 4.82 65.37 45.35 31.46 0.00 61.17 14.02 17.33 32.86 77 E7d_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 6.82 5.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78 ER7f ExonRegion 1 11.87 22.01 6.96 15.14 17.11 37.72 51.87 17.22 39.66 23.76 78.49 109.63 132.16 74.59 4.97 44.48 61.30 34.65 1.82 65.20 19.60 13.54 27.69 79 ER8a ExonRegion 1 26.50 54.19 16.75 29.56 33.61 69.38 63.56 23.37 45.83 29.07 90.30 171.58 222.87 69.92 11.79 52.25 66.73 32.47 17.30 88.08 18.31 28.93 19.09 80 E8_Da KnownBoundary 1 33.86 30.13 22.32 57.50 47.03 45.09 85.98 16.35 76.30 31.11 77.65 141.95 201.45 68.22 4.45 42.21 62.27 53.02 12.24 148.35 13.90 48.37 8.37 81 ER8b ExonRegion 1 37.47 49.45 16.08 35.59 44.70 102.04 75.48 34.59 51.82 35.90 112.65 207.16 213.77 104.13 14.27 90.27 82.78 75.35 39.09 112.68 33.97 38.59 23.97 82 E8_Ab KnownBoundary 1 39.93 42.95 24.13 28.00 55.43 143.67 91.68 35.04 38.54 39.03 97.34 245.18 170.77 109.25 8.90 39.56 90.70 39.63 18.26 112.43 25.39 40.60 27.06 83 ER8c ExonRegion 0 73.40 78.75 32.30 51.36 82.78 141.57 100.63 59.57 66.09 56.53 133.25 179.75 207.37 83.51 26.90 87.85 88.42 67.40 43.89 94.95 28.66 39.31 25.36 84 E8_Db KnownBoundary 0 118.24 41.11 85.92 82.64 152.55 208.29 124.89 73.11 78.38 57.19 75.12 213.22 203.23 69.57 37.09 93.82 68.35 33.25 52.71 81.17 11.43 31.05 31.16 85 ER8d ExonRegion 0 91.27 72.74 56.00 58.29 93.40 120.54 81.34 68.78 48.56 51.10 68.19 84.66 72.43 44.79 51.50 40.19 34.79 23.19 28.60 47.02 8.50 26.82 12.33 86 ER8e ExonRegion 0 0.00 0.00 0.00 0.00 1.19 2.04 1.32 3.65 2.88 0.00 0.00 0.00 2.08 1.80 0.00 0.00 0.00 0.00 0.00 1.42 0.00 1.16 0.00 87 IG26_AR1 ActiveIntergenicRegion 0 15.22 17.85 6.50 16.24 17.94 25.29 15.95 13.10 11.53 10.50 5.33 13.34 13.70 7.50 5.89 8.74 3.62 5.83 10.40 16.64 1.93 2.98 2.48 88 IG26_SR2 SilentIntergenicRegion 0 26.34 46.42 16.71 21.94 23.86 28.90 21.60 15.32 15.33 16.88 9.08 22.37 19.22 9.15 7.18 9.39 4.84 15.88 13.30 25.17 3.20 8.80 4.47 89 IG26_AR4 ActiveIntergenicRegion 0 41.32 45.06 27.94 30.00 46.12 47.74 21.89 24.93 18.13 13.53 10.88 9.94 21.44 17.59 13.87 7.32 6.97 22.01 32.50 19.83 8.14 8.43 12.39 90 IG26_AR5 ActiveIntergenicRegion 0 33.45 38.62 24.75 25.36 18.48 25.57 12.48 17.79 14.42 14.53 8.47 7.31 5.24 5.24 12.90 4.34 4.82 17.69 12.69 17.80 6.73 5.53 6.63 91 IG26_AR6 ActiveIntergenicRegion 0 6.08 1.07 0.00 0.00 0.70 0.48 1.04 0.00 1.94 0.45 3.00 19.13 10.98 3.50 21.52 4.63 8.86 0.00 0.00 0.00 0.00 0.00 0.00