Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SAMD8 Gene 0 20.31 28.94 20.78 17.61 29.35 46.11 39.91 26.44 58.20 20.54 48.08 59.32 56.00 52.40 27.12 41.78 49.36 45.77 25.64 74.87 64.86 112.56 76.37 2 447533 Transcript 0 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 372690 Transcript 0 12.15 8.35 12.55 7.25 12.53 23.29 24.23 13.21 20.08 8.64 37.73 15.91 24.13 36.22 26.08 30.62 27.15 29.50 8.21 32.83 56.82 50.36 37.40 4 372687 Transcript 0 6.60 12.76 7.17 7.05 9.83 17.65 17.82 10.04 23.29 7.74 13.39 19.88 18.96 13.26 7.75 17.21 18.04 16.38 10.30 30.87 22.60 38.65 27.05 5 ER1a ExonRegion 0 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.01 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 2.08 0.66 0.17 0.40 3.55 3.36 2.69 0.00 1.61 0.27 3.94 0.00 0.00 5.59 1.48 4.18 7.29 1.08 3.56 7.52 21.07 7.67 14.02 8 E2_Ab NovelBoundary 0 9.19 3.03 3.02 1.27 11.54 7.33 3.80 0.00 4.02 2.90 9.95 0.00 0.00 12.42 0.00 14.10 33.29 4.23 16.94 32.28 36.26 24.43 11.01 9 E2_Da NovelBoundary 0 0.00 6.38 0.00 0.00 4.07 20.33 5.92 2.14 4.63 7.39 9.84 0.00 0.00 7.00 0.00 13.07 14.03 14.47 14.31 11.76 11.55 2.94 17.33 10 E2a_E3a KnownJunction 0 14.37 12.89 2.99 0.00 0.00 0.00 3.89 0.00 4.75 4.08 4.90 5.70 0.00 7.36 13.35 11.71 13.00 9.62 8.09 11.31 28.11 16.78 8.45 11 ER2b ExonRegion 0 11.89 8.45 2.07 0.63 7.82 13.82 7.43 0.00 4.47 2.38 12.04 1.00 0.00 11.87 8.70 11.89 31.23 10.38 14.70 30.28 45.77 24.20 18.30 12 ER2c ExonRegion 0 0.00 2.40 0.00 0.85 0.00 7.47 3.57 0.00 2.32 2.21 5.45 0.00 0.00 3.16 1.87 19.11 7.54 5.05 4.27 7.75 15.50 7.29 10.17 13 E2b_E3a KnownJunction 0 0.00 3.03 0.00 2.06 0.00 0.00 2.25 0.00 6.86 4.35 4.74 0.00 0.00 0.00 0.00 8.46 12.06 19.65 12.05 14.25 26.50 8.27 15.71 14 ER3a ExonRegion 0 28.89 33.03 29.03 21.32 35.22 43.61 39.41 30.13 68.81 31.22 81.05 70.99 57.30 75.59 40.06 72.35 81.99 77.58 42.55 94.89 105.89 133.11 105.50 15 E3a_E4a KnownJunction 0 37.41 18.62 27.17 21.31 27.84 28.05 39.61 37.79 73.61 26.03 77.44 65.12 113.79 76.87 54.76 84.51 100.70 85.52 69.08 99.52 147.22 160.86 98.85 16 ER4a ExonRegion 0 25.49 27.81 28.57 16.55 37.40 37.99 46.31 32.52 71.12 20.21 94.05 88.48 87.35 90.98 42.91 67.37 89.12 109.07 45.62 113.63 177.10 128.27 108.59 17 E4_Da NovelBoundary 0 10.45 3.22 6.71 9.52 3.90 0.00 4.37 8.95 3.39 0.00 0.00 13.50 0.00 0.00 0.00 0.00 0.00 2.32 3.67 6.39 0.00 0.00 0.00 18 E4a_E5a KnownJunction 0 15.71 24.34 38.61 14.18 25.30 50.77 37.41 33.72 71.41 17.27 79.39 91.68 62.33 109.37 30.29 60.92 89.48 111.05 28.61 88.84 204.73 100.12 94.92 19 E4a_E6a NovelJunction 0 0.00 2.96 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 6.90 0.00 6.33 4.94 0.00 7.01 12.62 4.60 0.00 0.00 2.47 5.39 7.77 20 ER5a ExonRegion 0 51.75 46.33 45.28 34.10 39.64 75.42 52.65 34.37 71.49 27.68 88.22 56.88 68.52 107.71 55.42 89.10 95.73 149.58 49.17 103.79 184.63 176.48 170.83 21 E5_Da NovelBoundary 0 52.97 59.20 36.43 24.07 35.99 62.92 37.41 36.43 56.68 24.18 69.75 80.13 61.52 75.05 64.40 68.87 63.58 129.13 51.77 143.24 136.96 150.33 135.04 22 E5b_E6a KnownJunction 0 14.00 30.65 23.86 17.45 47.03 34.98 48.67 42.02 66.17 22.03 46.01 83.88 79.38 84.82 19.53 83.74 64.05 116.73 34.35 98.30 137.70 144.33 154.76 23 ER5b ExonRegion 0 25.74 36.47 24.03 17.72 35.82 38.75 34.72 34.96 59.52 22.46 53.12 55.72 74.28 79.74 32.38 74.59 60.27 115.75 40.48 108.03 127.03 131.87 133.85 24 ER6a ExonRegion 0 29.14 34.83 37.66 31.07 21.51 45.24 48.66 38.11 71.37 26.42 78.30 62.85 67.62 103.17 57.28 75.82 63.55 97.67 43.54 103.30 140.94 149.77 151.27 25 E6_Da KnownBoundary 0 9.63 2.96 16.08 3.00 4.16 17.38 15.46 2.51 6.42 1.42 2.63 0.00 0.00 0.00 9.64 13.07 13.28 9.08 4.42 13.49 11.74 0.00 0.00 26 E6a_E6b KnownJunction 0 20.00 11.51 34.50 21.34 34.04 66.50 66.11 39.64 53.88 21.57 104.34 42.01 72.40 95.71 63.42 75.96 61.15 77.81 12.99 79.64 121.27 126.63 89.72 27 ER6b ExonRegion 0 6.40 4.14 9.33 5.43 4.34 3.24 11.02 8.31 9.64 3.70 6.15 2.29 9.82 2.93 8.91 11.54 7.95 8.05 4.07 13.22 8.49 6.17 9.03 28 E6_Ab KnownBoundary 1 16.89 5.59 7.48 5.59 3.82 0.00 22.66 5.01 12.18 6.02 7.63 0.00 38.47 6.71 9.15 11.19 3.46 5.55 3.48 13.17 3.15 2.57 11.35 29 ER6c ExonRegion 0 23.41 29.11 25.75 22.49 45.38 77.29 52.69 36.47 76.28 29.39 60.68 81.06 93.29 63.34 38.26 47.15 53.02 34.03 28.83 87.62 58.43 161.71 83.38 30 E6_Db KnownBoundary 1 20.23 48.15 14.72 13.09 25.04 43.16 105.86 23.66 79.48 29.23 44.38 92.88 124.50 49.56 23.12 29.91 26.18 27.65 12.05 84.69 35.77 136.37 50.19 31 ER6d ExonRegion 0 20.00 41.49 19.37 19.87 34.98 59.87 54.46 31.83 74.34 20.69 37.22 77.24 66.01 46.95 20.24 29.73 44.61 32.77 20.82 88.24 39.89 132.89 73.29 32 IG2 Intergenic 0 19.01 30.18 17.57 15.63 22.51 22.54 16.70 18.07 25.69 11.09 6.40 18.55 13.58 8.46 9.93 8.04 7.77 8.32 8.30 19.31 10.92 43.06 18.25 33 IG2_SR1 SilentIntergenicRegion 0 9.65 50.09 15.47 22.39 44.88 42.43 43.47 31.42 66.49 23.80 11.93 84.76 73.44 27.94 12.43 14.76 14.22 14.56 13.93 50.86 15.72 169.21 49.23 34 IG2_AR1 ActiveIntergenicRegion 0 23.14 96.74 29.11 33.86 59.61 66.56 56.23 36.36 84.54 28.86 31.01 88.98 71.64 42.36 25.21 30.96 30.13 37.39 25.40 90.16 62.48 151.90 77.68 35 IG2_AR3 ActiveIntergenicRegion 0 81.33 116.61 66.21 63.07 88.02 96.88 58.24 78.23 91.37 42.67 24.13 68.35 44.95 31.01 41.02 24.86 28.91 20.44 22.07 62.73 34.18 179.55 64.94 36 IG2_AR4 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.74 0.00 0.00 0.00 11.75 37 IG2_AR5 ActiveIntergenicRegion 0 18.20 13.21 12.62 4.66 13.91 1.82 7.27 3.77 6.90 3.14 0.00 1.62 2.23 1.08 0.41 2.11 0.00 2.96 2.71 2.41 2.56 0.00 4.94