Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PANK1 Gene 0 11.98 42.24 34.81 12.22 30.96 36.58 32.05 26.23 17.84 19.08 34.59 16.21 19.68 34.13 25.62 20.15 26.39 36.24 28.91 37.53 12.42 15.64 15.26 2 307534 Transcript 1 0.38 12.59 17.16 1.37 8.66 16.03 13.39 11.12 6.39 6.27 34.14 3.52 4.66 24.64 11.70 22.33 24.02 46.01 13.90 28.37 12.74 5.25 13.36 3 488482 Transcript 0 0.47 0.57 1.56 0.26 0.82 1.03 1.93 0.54 0.09 0.45 3.16 0.20 0.00 1.54 3.75 1.94 2.08 0.94 0.93 1.20 0.05 0.17 0.81 4 371774 Transcript 0 0.00 0.38 0.00 0.82 0.00 0.33 2.04 0.47 0.00 0.00 2.80 0.64 1.40 2.95 4.31 3.36 2.51 1.00 0.00 1.52 1.18 0.00 0.00 5 342512 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 322191 Transcript 0 11.04 3.22 0.00 0.00 19.86 5.22 1.85 5.09 3.27 4.43 2.68 0.00 0.00 2.47 4.45 7.95 4.58 30.30 0.00 7.73 0.00 0.00 0.00 7 371775 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 461829 Transcript 1 1.20 6.53 5.64 2.47 6.84 2.08 10.75 3.88 1.80 2.20 19.74 9.77 10.53 11.42 0.71 0.59 14.60 3.45 5.45 5.22 2.23 1.18 2.90 9 ER1a ExonRegion 0 0.75 2.69 4.67 1.01 1.11 7.86 4.03 2.89 1.86 3.23 16.96 1.03 2.50 14.14 6.47 9.02 11.11 16.99 7.66 11.87 6.51 2.11 6.48 10 E1a_E8a KnownJunction 0 0.00 22.50 29.66 1.73 16.21 24.19 22.74 19.35 10.91 9.32 51.33 6.00 6.82 35.14 16.94 35.63 36.93 75.03 20.14 44.87 18.97 8.39 20.23 11 ER2a ExonRegion 0 1.41 1.48 1.89 1.14 4.34 2.75 1.34 2.99 0.65 0.68 12.62 0.00 0.00 5.24 4.13 8.15 7.90 2.44 1.98 2.61 0.37 1.17 1.91 12 E2_Ab KnownBoundary 0 2.89 2.63 0.00 1.33 3.14 0.00 2.12 4.19 0.00 0.00 13.79 0.00 0.00 0.00 0.00 10.94 3.46 2.57 3.95 3.26 0.00 2.82 3.41 13 E2_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.32 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 14 E2_Ad KnownBoundary 1 0.00 3.35 8.10 3.63 8.40 2.73 5.83 0.00 0.00 0.00 26.43 0.00 0.00 4.94 31.65 12.82 17.86 0.00 0.00 5.56 6.12 0.00 0.00 15 ER2b ExonRegion 1 2.12 4.07 5.82 4.09 9.37 3.67 3.97 3.46 1.24 1.15 32.86 0.00 0.00 12.99 23.21 17.83 16.50 3.70 3.19 5.85 4.41 2.08 2.94 16 ER2c ExonRegion 1 0.49 2.66 7.26 4.09 6.17 1.83 6.01 2.66 1.24 1.15 25.28 0.00 0.00 14.49 20.98 14.17 16.00 3.70 2.70 5.73 4.41 1.60 0.90 17 ER2d ExonRegion 0 0.00 1.45 3.89 2.69 0.80 0.35 4.68 0.84 0.70 1.14 18.31 2.27 1.11 5.90 15.01 6.63 17.01 1.91 0.83 8.32 2.12 1.20 0.85 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 9.27 3.67 0.00 0.00 0.00 0.00 2.59 0.00 0.00 19 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 4.68 0.00 0.00 0.00 0.00 0.00 0.00 21 ER3a ExonRegion 0 0.00 1.15 0.00 0.84 0.00 0.98 3.87 1.40 0.00 0.00 6.25 1.93 4.19 8.86 3.67 6.42 2.95 2.99 0.00 4.55 0.94 0.00 0.00 22 E3_Da NovelBoundary 1 3.11 12.30 28.47 30.50 15.45 5.11 28.71 18.07 27.05 16.28 0.00 19.96 0.00 2.47 0.00 0.00 4.21 17.37 0.00 11.95 0.00 0.00 3.59 23 E3a_E8a KnownJunction 0 0.00 0.00 0.00 1.63 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.58 0.00 0.00 0.00 0.00 0.00 0.00 24 I3 Intron 0 0.93 1.93 3.27 1.50 2.08 1.21 6.96 2.22 1.24 0.62 9.49 6.65 6.52 4.71 5.28 3.96 5.95 2.12 1.37 3.81 0.46 0.76 0.99 25 I3_AR1 ActiveIntronRegion 1 1.96 8.29 9.51 1.89 3.92 3.14 17.79 7.18 4.28 0.52 35.53 15.71 17.12 19.19 23.63 14.47 18.37 4.83 3.31 7.03 2.15 4.11 3.75 26 ER4a ExonRegion 0 0.00 0.06 0.49 0.00 1.42 3.90 4.96 0.00 0.00 0.86 3.14 0.00 0.00 4.92 3.81 1.61 3.51 1.46 1.69 0.04 0.00 0.00 0.00 27 E4_Da NovelBoundary 1 1778.61 1523.22 2224.88 2644.85 1183.02 933.16 1318.65 2305.16 2208.40 1668.58 463.06 256.43 425.78 152.69 528.71 1707.16 976.34 3316.06 1454.07 1492.59 702.66 626.17 1711.87 28 E4a_E5a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E5_Aa NovelBoundary 0 2.82 0.00 5.62 3.70 8.66 0.00 10.20 4.39 0.00 0.00 9.74 0.00 0.00 2.47 18.54 3.76 0.00 7.42 0.00 3.13 0.00 0.00 0.00 30 ER5a ExonRegion 0 1.82 1.82 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.09 0.00 0.00 0.20 7.94 0.00 0.00 0.00 2.85 3.66 0.00 0.00 0.00 31 E5_Da NovelBoundary 0 3.33 0.00 13.81 3.20 0.00 5.56 1.68 7.52 0.00 1.67 4.63 6.30 0.00 4.24 4.45 0.00 9.54 8.87 0.00 6.20 0.00 2.39 3.76 32 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E6_Aa NovelBoundary 0 3.70 2.89 13.93 11.32 0.00 14.14 3.58 11.42 4.98 0.00 13.06 0.00 0.00 9.48 15.58 0.00 9.07 13.76 8.85 4.86 0.00 2.57 0.00 34 ER6a ExonRegion 0 0.03 0.65 5.86 0.65 0.00 0.59 7.22 0.83 0.00 1.64 1.24 1.39 0.00 0.43 5.93 3.85 3.18 2.65 0.00 2.07 0.00 0.00 3.77 35 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER8a ExonRegion 1 4.94 22.21 31.56 7.44 9.68 29.21 25.56 22.54 24.68 24.87 65.38 2.46 11.61 57.24 28.83 33.85 45.30 77.20 49.93 58.46 31.85 15.81 25.43 37 E8_Ab KnownBoundary 1 9.78 39.80 51.03 12.79 24.87 65.76 56.84 34.13 28.96 24.07 84.28 0.00 12.82 68.40 34.49 41.27 56.85 83.20 58.07 65.13 22.05 19.29 44.64 38 ER8b ExonRegion 0 8.15 28.89 36.19 11.41 23.00 55.34 29.96 33.30 26.13 24.35 59.37 12.15 17.50 73.84 32.08 34.01 53.47 98.56 61.83 62.41 31.60 25.40 34.75 39 E8a_E9a KnownJunction 0 7.26 44.99 21.76 14.55 38.79 66.78 50.12 30.85 30.32 16.22 52.96 0.00 26.30 63.98 25.47 37.08 81.81 100.65 40.00 85.20 24.15 16.72 51.90 40 ER9a ExonRegion 0 9.05 49.29 38.02 13.80 31.04 66.29 42.13 46.14 33.82 27.17 91.08 27.29 38.68 74.44 41.14 41.35 72.58 130.18 70.08 72.82 34.59 21.24 42.80 41 E9_Da KnownBoundary 0 0.00 16.71 7.95 3.66 12.14 0.00 10.82 4.35 1.42 2.66 20.64 36.91 34.09 5.36 8.90 7.95 21.97 12.68 9.60 6.01 2.59 0.00 8.28 42 E9a_E10a KnownJunction 0 33.34 23.68 52.95 8.79 24.53 66.55 54.98 33.60 30.09 35.57 93.34 29.71 26.95 33.61 28.56 41.70 47.03 129.87 44.05 66.03 42.32 25.17 61.89 43 E9a_E11a KnownJunction 0 11.04 3.22 0.00 0.00 19.86 5.22 1.85 5.09 3.27 4.43 2.68 0.00 0.00 2.47 4.45 7.95 4.58 30.30 0.00 7.73 0.00 0.00 0.00 44 ER9b ExonRegion 1 1.20 6.53 5.64 2.47 6.84 2.08 10.75 3.88 1.80 2.20 19.74 9.77 10.53 11.42 0.71 0.59 14.60 3.45 5.45 5.22 2.23 1.18 2.90 45 E9_Db NovelBoundary 0 0.00 5.99 1.74 1.56 3.65 10.45 9.58 2.18 0.00 1.67 16.90 6.00 5.84 19.48 0.00 8.72 8.79 3.77 0.00 6.20 0.00 0.00 4.35 46 I9 Intron 0 1.53 4.60 1.82 2.18 3.32 4.59 7.82 3.88 2.07 2.23 8.51 6.85 6.80 6.81 4.21 3.68 6.68 3.79 2.94 6.32 0.84 1.92 1.56 47 I9_SR1 SilentIntronRegion 0 2.52 5.79 2.14 3.34 4.16 5.29 8.33 4.10 2.85 2.37 16.30 11.48 7.61 11.86 5.86 5.13 11.59 5.98 5.03 9.83 1.08 3.28 2.69 48 I9_AR2 ActiveIntronRegion 1 3.54 8.84 2.13 4.11 5.32 6.55 11.43 8.55 2.62 3.42 15.35 7.08 4.42 9.65 7.49 2.80 7.45 7.83 3.72 3.15 1.04 3.05 2.05 49 I9_AR3 ActiveIntronRegion 0 0.00 6.03 3.72 1.07 2.68 0.98 10.31 8.15 1.01 2.29 1.79 14.84 0.34 5.45 0.00 4.46 6.37 1.85 0.11 5.17 0.00 1.79 2.94 50 ER10a ExonRegion 0 8.97 41.14 27.96 10.49 24.49 46.29 34.96 28.87 22.92 25.34 58.80 23.38 23.53 60.50 33.50 43.68 59.02 71.49 48.05 56.93 35.11 19.03 33.23 51 E10a_E11a KnownJunction 0 17.19 61.63 29.33 11.65 48.56 39.98 47.70 16.27 26.48 32.91 57.38 29.26 6.82 78.64 33.01 35.38 45.16 74.41 45.74 64.36 37.38 25.11 35.51 52 ER11a ExonRegion 0 13.93 97.76 38.54 13.15 31.96 40.80 39.89 26.82 26.14 27.31 56.19 15.12 16.94 59.76 31.82 45.49 47.70 84.31 40.38 70.90 30.44 24.51 23.64 53 E11a_E12a KnownJunction 0 20.97 159.64 40.09 21.51 19.35 38.90 47.78 30.11 30.64 22.64 44.80 6.00 12.99 34.43 28.31 20.51 36.00 84.40 46.59 90.89 26.63 8.21 31.16 54 ER12a ExonRegion 0 18.96 130.60 34.43 19.53 44.51 59.67 51.12 32.39 26.58 29.83 49.73 26.18 13.66 64.02 30.26 32.93 36.26 77.56 45.25 60.44 25.76 21.03 36.01 55 E12a_E13a KnownJunction 0 3.11 99.06 59.76 22.94 61.71 23.34 49.90 48.30 33.33 29.39 31.74 25.21 25.97 62.81 22.99 34.61 21.51 73.12 71.15 75.17 23.48 17.70 31.58 56 ER13a ExonRegion 0 26.02 77.41 69.33 24.38 66.66 61.49 59.31 48.13 29.75 32.86 35.81 30.93 37.22 38.48 40.94 22.07 24.91 24.73 37.42 51.55 8.14 27.56 14.55 57 ER13b ExonRegion 0 0.00 1.36 5.72 0.00 4.46 1.83 1.32 1.73 1.65 1.15 0.00 0.00 3.13 0.00 0.97 0.00 0.00 0.00 0.00 0.71 1.47 0.00 0.00 58 ER13c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 IG49_AR5 ActiveIntergenicRegion 0 0.00 8.13 2.76 0.00 2.68 6.88 0.00 0.00 0.00 0.00 1.93 14.07 9.38 5.08 2.90 0.00 0.00 3.23 11.95 4.26 0.00 0.00 0.00 60 IG49_AR4 ActiveIntergenicRegion 0 0.00 4.07 2.45 0.00 2.68 11.00 0.00 0.00 0.00 0.00 1.93 11.55 15.63 6.68 2.90 0.00 0.00 3.08 12.74 5.91 0.00 0.00 0.00 61 IG49_AR3 ActiveIntergenicRegion 0 0.00 2.29 1.84 0.00 5.35 8.25 0.00 1.73 0.00 0.00 0.97 8.66 28.14 4.26 2.90 1.86 0.00 1.85 10.75 5.32 0.00 0.00 0.00 62 IG49_AR2 ActiveIntergenicRegion 0 0.00 1.86 1.23 0.00 3.34 5.50 0.00 1.73 0.00 0.00 1.93 20.20 23.06 3.52 1.93 3.22 0.00 1.85 9.56 6.38 0.00 0.00 0.00