Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CEP55 Gene 0 54.40 60.61 51.62 16.02 71.00 64.92 143.98 58.74 12.01 51.08 253.90 367.48 126.09 300.63 145.71 228.31 147.86 101.58 42.61 86.80 6.18 39.07 11.25 2 447994 Transcript 0 2.77 1.40 0.06 0.00 1.47 10.74 5.77 4.19 0.00 3.02 18.74 0.00 3.41 16.30 3.66 9.91 13.76 9.16 2.88 8.08 1.37 4.86 0.98 3 371485 Transcript 0 7.66 8.25 8.22 3.45 21.61 24.57 36.82 8.77 2.42 12.63 65.59 58.40 25.45 135.19 37.74 75.48 62.03 62.50 11.83 32.32 2.00 9.70 2.45 4 358339 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 445435 Transcript 0 1.99 1.91 1.11 0.00 0.00 0.37 3.26 0.23 0.00 0.00 2.91 10.52 0.46 1.23 2.14 5.71 2.07 0.50 0.96 3.32 0.00 0.00 0.00 6 496302 Transcript 0 10.42 7.85 8.31 5.41 10.77 7.76 21.13 7.45 3.88 5.61 14.73 17.47 12.37 12.87 10.12 21.02 21.23 16.00 9.29 12.10 2.60 2.67 6.56 7 IG43_AR1 ActiveIntergenicRegion 0 3.03 0.00 1.01 0.00 1.53 0.53 0.38 0.74 0.53 0.49 44.72 2.02 5.51 5.47 0.00 28.10 0.00 0.00 0.00 0.00 17.08 16.67 11.78 8 ER1a ExonRegion 0 5.54 2.81 0.12 0.00 2.93 21.48 11.54 1.23 0.00 3.39 11.41 0.00 0.00 22.89 2.62 19.81 10.69 10.82 5.76 4.66 0.21 3.47 1.96 9 ER1b ExonRegion 1 5.74 6.73 2.48 0.70 12.19 43.42 37.34 6.29 0.69 6.97 54.55 0.64 4.78 109.63 20.89 67.68 45.44 49.46 7.91 20.29 3.48 8.14 2.78 10 E1_Da KnownBoundary 0 0.00 2.76 4.23 0.00 7.89 2.27 6.05 8.21 0.00 11.50 59.75 6.30 0.00 46.91 4.45 31.19 56.01 17.66 0.00 19.43 10.93 0.00 0.00 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.15 0.00 2.66 26.06 0.00 6.82 9.71 4.70 0.00 16.83 7.50 0.00 11.51 2.53 6.25 0.00 12 ER1c ExonRegion 1 5.51 15.47 9.46 3.55 10.12 18.17 22.27 10.94 1.66 16.48 91.23 27.41 19.39 198.94 41.68 108.21 83.27 100.17 19.40 38.19 3.41 11.83 7.34 13 E1b_E2a KnownJunction 0 11.11 9.27 12.15 6.79 52.04 55.54 84.22 12.77 4.37 21.41 100.71 143.45 56.98 199.31 64.28 115.27 96.21 87.34 12.89 57.72 2.59 17.27 0.00 14 E2_Ab NovelBoundary 1 2.59 11.51 14.31 2.93 9.25 45.83 42.26 12.49 2.55 13.75 97.66 36.61 12.99 73.81 36.96 31.44 92.75 52.52 0.00 65.00 2.72 2.69 0.00 15 ER2a ExonRegion 0 7.81 15.49 14.33 5.45 33.14 51.77 70.27 20.74 2.47 22.41 148.39 115.56 44.01 208.76 71.19 98.08 125.69 92.10 8.33 72.01 4.24 15.55 0.00 16 ER2b ExonRegion 0 15.65 38.28 36.32 9.09 43.96 73.54 109.70 46.48 8.73 36.27 322.44 235.29 112.20 315.05 105.26 221.46 170.98 107.98 31.78 99.04 4.36 30.10 11.54 17 E2a_E3a KnownJunction 1 19.19 27.96 42.84 17.45 32.94 84.67 114.60 51.55 8.62 40.99 383.20 273.84 72.88 326.62 107.67 203.37 184.48 126.47 17.04 100.54 14.15 26.09 0.00 18 ER3a ExonRegion 0 28.68 46.26 48.25 13.00 56.87 66.63 148.24 60.82 15.36 66.07 422.43 508.85 186.43 493.24 150.97 366.71 280.66 207.01 65.13 153.61 14.58 50.25 14.03 19 E3a_E4a KnownJunction 0 51.34 64.66 43.91 16.51 107.22 73.88 159.38 74.75 14.81 72.15 397.10 662.77 197.23 536.59 135.11 368.11 249.46 235.33 97.23 169.96 8.34 62.83 11.18 20 E4_Ab NovelBoundary 0 40.53 82.95 54.76 13.32 71.14 72.86 183.05 60.79 18.78 48.11 364.93 524.27 117.20 484.08 141.29 354.86 221.41 144.51 42.64 163.24 10.81 19.29 14.77 21 ER4a ExonRegion 0 38.93 73.47 50.67 15.29 77.48 65.14 156.05 64.78 16.92 65.22 416.83 606.31 181.89 541.18 137.62 375.26 261.63 206.14 66.89 169.56 10.16 44.84 10.73 22 ER4b ExonRegion 0 44.77 71.93 45.71 13.57 81.44 88.02 176.12 48.13 16.08 48.59 435.57 557.00 199.43 494.09 121.98 348.90 228.77 139.06 27.01 131.87 19.55 32.88 12.90 23 E4_Da NovelBoundary 0 9.19 14.93 11.97 3.70 10.87 7.10 105.55 3.86 1.79 1.67 11.11 45.76 13.64 19.01 18.54 67.50 4.77 14.51 0.00 34.64 0.00 2.88 0.00 24 E4a_E5a KnownJunction 0 72.68 85.31 40.92 18.01 91.77 103.86 269.75 33.89 12.01 52.52 397.15 529.82 254.85 476.25 146.61 326.67 158.77 119.88 25.79 90.83 22.18 42.74 4.35 25 I4 Intron 0 3.96 8.70 3.36 3.18 8.55 3.59 22.07 7.07 1.78 5.05 12.99 46.66 16.88 14.15 9.53 34.31 15.02 14.92 3.07 26.74 0.40 2.95 1.59 26 I4_SR1 SilentIntronRegion 0 3.96 8.71 3.36 3.19 8.55 3.59 22.09 7.07 1.78 5.05 13.00 46.68 16.89 14.16 9.54 34.33 15.03 14.93 3.07 26.76 0.40 2.95 1.59 27 I4 Intron 0 4.72 14.31 3.58 2.18 10.13 3.10 20.70 6.78 1.48 5.46 17.29 33.48 13.33 14.78 9.82 27.78 13.30 11.11 2.65 20.12 0.24 1.62 1.03 28 I4_SR1 SilentIntronRegion 0 4.34 14.45 3.80 2.18 9.51 3.31 21.54 6.63 1.35 5.29 17.11 34.69 13.47 14.48 9.96 28.40 12.94 10.45 2.63 19.62 0.27 1.53 0.90 29 I4_AR2 ActiveIntronRegion 0 7.41 13.34 2.00 2.22 14.64 1.61 14.78 7.89 2.42 6.73 18.62 24.92 12.38 16.98 8.85 23.42 15.90 15.89 2.79 23.75 0.00 2.28 1.93 30 ER5a ExonRegion 0 38.59 77.10 68.00 22.76 111.55 76.35 224.53 77.14 14.75 55.70 370.81 607.87 188.13 449.97 149.23 406.61 224.15 150.28 52.84 144.95 11.81 59.50 13.91 31 E5a_E6a KnownJunction 0 48.90 75.84 62.09 43.12 86.93 69.62 189.15 97.72 22.74 65.33 432.37 589.99 202.10 524.34 128.93 384.51 333.33 111.80 44.61 164.65 6.30 57.93 10.84 32 ER6a ExonRegion 0 70.88 73.86 84.27 26.51 125.00 103.83 251.96 82.14 17.37 75.30 423.50 625.03 232.15 426.66 197.00 335.44 228.72 134.71 51.25 135.41 7.63 59.50 8.47 33 E6_Ab KnownBoundary 1 61.20 71.37 57.33 23.31 160.95 119.19 278.67 74.67 5.79 56.71 464.01 475.50 95.61 329.69 201.74 308.64 237.12 111.63 70.12 93.19 14.02 55.05 3.24 34 ER6b ExonRegion 0 51.00 56.20 66.11 16.06 116.43 131.90 197.95 80.90 7.35 66.83 453.34 578.46 170.33 360.36 184.55 353.25 210.61 126.77 49.57 116.24 9.73 52.09 11.10 35 E6a_E7a KnownJunction 0 55.94 79.33 72.71 16.58 80.56 147.24 203.81 98.08 9.49 84.75 434.00 813.42 184.73 432.11 178.75 402.63 196.26 132.53 61.37 148.54 5.62 50.46 27.06 36 ER7a ExonRegion 0 59.09 72.28 88.46 19.53 77.78 91.41 169.74 79.53 11.37 67.78 397.94 809.07 266.35 407.61 195.79 385.59 237.16 164.71 67.25 127.25 10.96 55.68 19.58 37 E7_Da KnownBoundary 0 0.00 0.00 4.88 0.00 0.00 2.78 4.50 2.18 0.00 0.00 2.16 0.00 6.82 0.00 8.90 3.25 0.00 2.49 0.00 5.82 0.00 0.00 0.00 38 E7a_E8a KnownJunction 0 70.31 102.22 99.26 22.08 116.72 84.84 210.70 97.22 19.68 80.59 450.59 980.12 317.02 482.37 340.07 539.35 291.54 181.94 77.27 117.22 5.68 68.15 31.58 39 ER7b ExonRegion 0 1.99 1.91 1.11 0.00 0.00 0.37 3.26 0.23 0.00 0.00 2.91 10.52 0.46 1.23 2.14 5.71 2.07 0.50 0.96 3.32 0.00 0.00 0.00 40 ER8a ExonRegion 0 63.41 83.01 82.93 18.02 84.62 90.73 213.77 79.96 15.45 82.47 464.52 763.12 172.82 463.69 242.42 413.94 285.08 176.04 83.98 128.97 8.73 54.72 20.73 41 E8_Da KnownBoundary 0 72.09 125.18 67.71 13.02 123.09 108.29 231.68 83.46 11.28 65.27 380.31 528.92 141.71 486.85 183.82 451.68 197.66 200.63 71.81 152.06 7.66 40.23 29.54 42 E8_Db KnownBoundary 0 0.00 6.31 5.41 2.06 0.00 0.00 7.24 3.98 0.00 0.00 7.58 0.00 27.43 8.06 13.35 15.47 21.04 8.50 0.00 6.46 0.00 2.88 0.00 43 E8b_E9a KnownJunction 0 82.90 163.92 58.90 23.31 167.23 108.80 288.34 89.79 18.20 73.98 442.06 838.47 252.26 603.33 261.82 533.88 272.65 244.74 89.04 122.85 5.37 52.84 31.07 44 ER8b ExonRegion 0 61.73 109.47 62.90 19.76 139.14 104.83 205.43 82.97 15.44 74.55 456.16 614.78 171.19 499.42 191.00 473.56 254.72 255.30 75.39 137.59 8.81 49.66 29.86 45 ER8c ExonRegion 0 64.91 126.76 60.57 20.05 139.39 100.60 247.77 86.34 16.82 74.44 450.00 723.85 254.16 552.12 228.23 517.86 252.75 266.08 72.96 139.01 5.25 44.55 30.49 46 ER8d ExonRegion 0 10.06 3.36 6.55 2.14 7.81 5.46 22.18 5.15 1.34 2.69 17.20 18.11 14.07 9.15 6.16 13.22 16.10 11.16 2.34 4.65 0.00 0.68 0.00 47 ER8e ExonRegion 0 14.82 3.86 5.51 1.36 14.45 9.17 33.23 3.63 1.24 3.44 13.34 12.12 4.69 10.23 10.73 11.00 9.90 7.02 3.19 8.51 0.00 0.00 0.00 48 ER8f ExonRegion 0 10.78 12.34 10.06 8.68 13.72 10.05 20.08 9.74 6.43 8.53 12.27 16.82 10.67 16.59 14.08 28.82 26.37 20.84 16.24 19.56 5.20 4.65 13.12 49 E8_Dd NovelBoundary 1 1528.86 1327.40 1673.95 1838.63 1691.17 915.27 1640.95 1844.80 1630.51 1501.31 638.48 203.47 242.35 256.23 472.84 1323.24 1389.62 2036.89 1287.10 1421.01 1145.91 561.51 1358.13 50 ER9a ExonRegion 0 103.88 100.66 77.01 23.74 106.08 85.89 202.06 91.07 17.01 74.80 283.88 466.78 156.94 364.88 232.64 258.17 150.67 99.04 55.56 94.29 4.48 55.69 12.41 51 ER9b ExonRegion 0 6.35 0.00 3.06 0.00 2.68 0.00 3.97 2.59 1.24 0.00 4.83 4.33 0.00 7.31 7.25 2.97 6.60 0.00 3.19 1.06 0.00 0.00 0.00 52 IG44_SR1 SilentIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 IG44_SR2 SilentIntergenicRegion 0 2.30 4.24 0.76 1.14 13.10 7.96 14.52 7.52 3.40 3.98 5.08 21.65 9.97 5.63 3.98 2.42 2.88 3.20 0.87 10.27 0.00 1.13 0.40 54 IG44_AR2 ActiveIntergenicRegion 0 3.79 7.24 7.11 2.58 8.34 4.98 12.75 5.83 1.53 5.81 8.77 32.41 2.74 10.72 5.46 7.07 6.71 13.12 1.78 12.80 0.55 0.29 0.41