Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 STAMBPL1 Gene 0 28.34 34.07 17.60 26.14 21.84 52.48 23.55 16.56 15.22 9.79 37.49 26.89 25.90 30.24 37.07 37.13 34.69 23.13 15.78 18.24 12.85 24.54 20.18 2 371926 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 371927 Transcript 0 5.81 5.28 1.56 1.71 4.81 2.58 6.48 1.57 2.16 1.91 1.68 3.42 4.69 2.87 4.50 9.48 3.72 2.99 4.04 7.39 3.02 3.56 4.90 4 461650 Transcript 0 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 1.45 0.00 0.00 1.40 1.62 0.00 0.00 0.00 0.00 0.00 0.00 5 468698 Transcript 0 2.58 0.70 0.63 0.52 0.47 0.59 1.82 0.37 0.25 0.34 2.82 5.95 13.85 1.18 0.72 1.94 1.60 0.61 1.39 0.92 0.38 0.76 0.78 6 371924 Transcript 0 3.75 2.02 1.81 1.96 1.41 3.69 6.07 1.56 0.57 0.32 5.22 7.03 5.75 2.62 2.05 3.52 7.17 2.08 1.17 3.05 1.71 4.05 2.11 7 371922 Transcript 0 18.57 21.45 7.46 26.21 13.12 37.12 20.75 10.84 12.59 3.89 15.79 13.99 15.04 8.67 5.57 15.59 15.68 8.63 3.14 6.43 5.00 8.73 8.40 8 ER1a ExonRegion 0 0.14 0.00 0.05 0.01 0.56 1.04 0.00 0.54 0.25 0.00 1.00 3.86 0.40 0.17 1.65 0.96 1.61 0.70 0.62 0.78 0.00 0.20 0.00 9 E1_Ab KnownBoundary 0 9.26 0.00 1.51 1.70 0.00 12.72 0.00 0.00 1.42 0.00 10.42 0.00 0.00 2.47 4.45 0.00 16.27 8.54 3.58 3.26 0.00 0.00 0.00 10 ER1b ExonRegion 0 3.74 10.92 12.22 8.03 2.33 40.34 9.72 8.47 10.90 7.21 35.49 3.98 3.53 31.06 26.81 35.23 44.63 38.08 15.96 15.21 23.97 13.04 17.95 11 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.74 0.00 0.00 0.00 0.00 4.19 4.77 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E5b KnownJunction 1 3.78 51.11 37.37 33.16 7.72 103.12 37.14 32.86 29.22 14.26 46.17 11.85 32.47 83.58 76.27 44.69 104.25 72.25 35.95 29.79 29.47 17.64 29.54 13 I1 Intron 0 2.26 0.72 0.97 0.65 0.48 1.04 4.90 0.82 0.79 0.36 7.97 9.37 9.58 2.14 2.51 5.61 6.69 1.44 1.47 2.04 2.43 1.41 4.49 14 I1_SR2 SilentIntronRegion 0 2.66 0.83 1.24 0.83 0.61 1.33 5.89 1.05 0.76 0.39 9.38 11.34 11.40 2.55 2.67 6.78 7.47 1.48 1.73 2.44 2.72 1.51 5.59 15 ER2a ExonRegion 1 5.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 3.29 18.24 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 16 E2_Da NovelBoundary 1 6.45 0.00 0.00 1.73 0.00 0.00 19.21 0.00 1.59 0.00 13.69 31.66 38.15 4.83 4.94 0.00 4.77 0.00 0.00 2.49 0.00 0.00 0.00 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 1 4.54 0.81 1.85 0.96 2.18 1.48 4.63 2.45 2.42 1.78 13.41 16.19 26.30 3.61 5.05 5.04 13.29 3.14 0.97 4.74 3.24 4.71 1.22 19 E3_Da KnownBoundary 0 6.30 2.89 1.36 2.06 4.33 5.11 18.06 0.00 1.24 3.65 17.06 17.56 19.80 2.47 8.90 0.00 8.79 4.81 0.00 6.52 3.03 5.88 4.18 20 E3a_E4a KnownJunction 0 3.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E3a_E5b NovelJunction 0 0.00 0.00 0.00 0.00 4.16 0.00 0.00 2.22 1.27 0.00 7.63 0.00 0.00 4.59 5.19 0.00 9.54 2.16 0.00 0.00 0.00 0.00 0.00 22 ER3b ExonRegion 1 1.79 2.09 1.90 1.55 1.41 1.77 5.45 1.12 0.74 1.01 8.36 14.57 23.31 1.02 2.17 5.81 4.80 1.84 4.17 2.75 1.13 2.17 2.35 23 E4_Aa NovelBoundary 0 6.52 2.83 3.19 3.76 0.00 7.44 7.82 3.94 1.71 0.00 8.79 12.00 6.82 0.00 0.00 4.36 4.58 2.57 0.00 0.00 0.00 4.90 28.00 24 I3_AR1 ActiveIntronRegion 0 1.20 0.00 2.34 0.00 0.00 0.00 1.32 0.00 0.70 2.69 8.15 7.34 6.32 0.00 0.00 0.00 2.44 0.00 0.00 1.94 0.00 1.09 3.45 25 ER4a ExonRegion 0 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 4.36 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 26 E4_Da NovelBoundary 0 10.08 0.00 2.99 5.16 8.06 2.90 1.90 4.64 0.00 4.11 14.58 0.00 12.82 0.00 5.19 3.59 12.34 6.30 7.91 0.00 0.00 3.12 0.00 27 I4_AR1 ActiveIntronRegion 0 8.57 1.34 2.86 4.13 0.51 5.00 2.20 1.09 3.40 0.72 18.90 7.23 19.19 1.96 1.41 6.17 7.69 5.91 2.92 0.70 6.96 0.88 3.06 28 E5_Aa NovelBoundary 0 3.78 0.00 1.39 1.60 0.00 2.90 3.71 2.55 1.10 1.32 2.58 18.91 0.00 4.83 5.56 3.42 0.00 5.51 0.00 0.00 0.00 5.27 0.00 29 ER5a ExonRegion 0 3.75 2.02 1.81 1.96 1.41 3.69 6.07 1.56 0.57 0.32 5.22 7.03 5.75 2.62 2.05 3.52 7.17 2.08 1.17 3.05 1.71 4.05 2.11 30 E5_Ab KnownBoundary 0 6.89 0.00 0.00 3.53 0.00 0.00 5.92 2.26 1.45 0.00 12.42 0.00 7.79 0.00 0.00 12.99 3.74 1.62 0.00 0.00 3.15 0.00 0.00 31 ER5b ExonRegion 0 27.57 54.88 50.61 35.75 32.08 127.52 38.90 37.10 39.45 19.12 113.81 49.26 43.35 102.83 93.23 75.14 121.01 90.38 30.84 51.19 36.58 60.35 46.20 32 E5a_E6a KnownJunction 0 50.60 81.04 57.04 50.11 61.55 122.20 44.87 47.65 49.04 30.00 133.35 47.12 27.76 114.25 198.78 89.04 109.68 103.01 51.20 57.01 59.18 100.61 40.80 33 ER6a ExonRegion 0 41.62 99.56 57.96 57.00 39.68 96.32 43.10 47.06 46.62 25.20 113.93 50.64 70.14 116.24 98.35 102.87 114.62 55.36 35.75 55.74 26.59 73.94 51.80 34 E6_Da NovelBoundary 0 7.26 6.18 0.00 8.09 7.81 13.34 28.66 17.21 3.79 1.29 2.37 12.60 6.82 9.89 11.50 7.43 3.55 4.23 4.61 15.15 6.18 0.00 3.67 35 E6a_E7a KnownJunction 0 78.09 185.76 79.89 64.36 73.01 181.88 93.45 52.62 47.28 40.83 139.46 68.42 46.59 124.02 84.43 105.44 98.27 29.31 42.17 55.74 16.37 83.03 50.79 36 I6_AR2 ActiveIntronRegion 0 10.81 8.79 5.76 18.56 10.24 11.48 11.60 6.32 4.03 1.39 4.36 11.55 7.29 3.10 3.55 9.31 7.49 6.46 0.43 8.29 2.21 7.89 2.96 37 E7_Aa NovelBoundary 0 6.89 18.02 9.43 51.61 0.00 31.29 36.39 12.53 8.91 5.35 12.95 12.60 0.00 5.06 19.66 3.76 13.65 10.20 0.00 9.01 3.15 5.76 11.52 38 ER7a ExonRegion 0 88.03 185.16 63.69 65.42 74.89 166.63 70.69 50.58 41.49 34.11 98.98 110.06 113.42 85.95 90.17 89.52 91.86 26.60 35.96 43.20 10.15 73.75 44.90 39 E7_Da NovelBoundary 1 14.00 40.65 7.57 51.81 19.27 8.12 4.50 17.17 5.64 1.67 0.00 24.31 13.47 4.47 8.90 3.93 12.44 9.33 0.00 23.97 0.00 8.88 11.52 40 E7a_E8a KnownJunction 1 54.16 152.60 85.45 66.72 62.22 142.08 71.54 42.80 46.38 27.00 76.39 75.77 129.37 51.03 66.88 87.41 101.26 24.04 23.34 30.23 5.99 60.87 43.45 41 I7 Intron 0 8.68 13.34 5.51 18.92 9.74 22.01 14.81 8.79 5.37 2.63 6.97 12.27 14.88 7.17 4.11 4.48 7.47 4.44 3.03 7.68 2.24 9.29 5.59 42 I7_AR1 ActiveIntronRegion 0 6.48 15.88 6.62 22.47 10.54 20.29 15.31 9.50 5.64 3.53 5.07 16.21 17.14 7.92 5.05 4.64 7.84 3.86 3.98 7.45 2.20 9.38 4.40 43 I7_SR1 SilentIntronRegion 0 11.26 10.68 4.34 15.24 9.01 24.27 14.42 8.13 5.16 1.68 9.20 8.06 12.58 6.44 3.12 4.33 7.16 5.16 2.01 8.06 2.32 9.32 7.00 44 E8_Aa NovelBoundary 0 19.93 6.05 4.91 19.34 23.51 23.57 25.57 10.72 4.72 7.49 6.90 6.30 0.00 9.89 0.00 13.07 0.00 4.19 0.00 9.08 0.00 18.98 4.10 45 ER8a ExonRegion 0 66.91 162.92 67.23 64.88 89.83 243.36 76.68 51.53 48.49 35.21 106.13 117.57 100.69 90.05 107.26 126.84 88.64 45.29 44.46 39.96 11.39 99.27 53.90 46 E8_Da NovelBoundary 1 7.56 2.70 2.78 11.62 23.34 41.00 37.19 11.21 11.98 4.32 4.26 37.81 25.81 2.47 0.00 0.00 0.00 0.00 0.00 11.12 0.00 14.88 0.00 47 E8a_E9b KnownJunction 0 58.31 182.27 64.07 80.44 115.96 232.08 84.44 50.81 44.18 35.40 112.77 131.29 132.13 115.84 106.43 189.86 102.20 84.65 76.33 29.34 23.54 69.07 65.64 48 E8a_E10a NovelJunction 0 0.00 6.58 1.33 0.00 8.57 0.00 4.50 3.94 0.00 0.00 7.95 6.30 0.00 4.94 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 3.59 49 I8 Intron 0 8.55 8.98 4.97 15.07 8.55 32.55 17.72 11.85 7.43 4.49 16.70 15.93 20.22 9.42 4.20 11.45 10.85 10.71 3.59 6.39 5.90 9.30 8.41 50 I8_AR1 ActiveIntronRegion 0 6.49 6.49 3.14 8.60 10.57 25.47 18.41 9.56 8.04 3.68 11.42 18.13 19.51 6.04 3.52 7.32 5.42 4.81 2.86 4.16 2.62 10.27 4.54 51 I8_SR1 SilentIntronRegion 0 9.75 10.43 6.04 18.84 7.39 36.71 17.35 13.20 7.09 4.97 19.79 14.68 20.65 11.39 4.60 13.87 14.02 14.14 4.02 7.70 7.81 8.75 10.67 52 E9_Aa NovelBoundary 0 16.45 18.62 1.83 21.98 7.81 52.19 22.83 16.68 12.27 4.51 24.22 6.15 25.49 14.24 6.30 3.33 7.95 6.01 4.05 5.50 10.44 8.14 7.34 53 ER9a ExonRegion 0 18.57 21.45 7.46 26.21 13.12 37.12 20.75 10.84 12.59 3.89 15.79 13.99 15.04 8.67 5.57 15.59 15.68 8.63 3.14 6.43 5.00 8.73 8.40 54 E9_Ab KnownBoundary 0 30.38 45.85 9.37 44.42 35.99 57.86 50.57 19.63 15.83 5.37 19.69 25.96 21.91 2.47 14.09 27.69 8.23 17.45 0.00 0.00 5.75 9.37 15.88 55 ER9b ExonRegion 0 103.11 164.75 65.45 96.02 71.91 200.63 76.37 52.33 42.68 30.38 139.42 111.60 87.64 118.17 127.99 171.30 146.17 111.94 58.40 45.50 59.48 92.84 86.17 56 E9_Da NovelBoundary 0 13.56 15.72 7.04 13.15 11.71 49.52 31.66 8.09 5.12 1.26 12.79 0.00 6.01 16.78 0.00 7.95 3.83 6.38 0.00 3.26 10.50 5.69 19.72 57 E9a_E10a KnownJunction 0 109.06 112.35 50.65 88.27 102.21 176.26 33.17 33.31 31.16 26.11 140.67 67.82 33.44 81.82 152.79 100.14 109.30 79.59 55.34 25.76 47.32 89.40 66.07 58 I9 Intron 0 22.10 8.28 6.87 14.10 9.36 34.37 21.08 11.70 6.92 1.70 9.38 11.94 16.06 6.35 5.35 5.43 7.06 2.74 3.16 4.89 1.38 6.63 5.52 59 I9_AR1 ActiveIntronRegion 0 15.77 9.43 2.42 9.75 6.64 30.97 20.17 13.22 4.27 0.57 8.62 10.16 6.15 6.75 3.53 6.40 4.91 3.19 2.11 2.82 1.09 5.84 6.32 60 I9_AR2 ActiveIntronRegion 0 25.08 7.77 8.94 16.15 10.64 36.04 21.56 11.03 8.16 2.22 9.75 12.79 20.68 6.18 6.20 5.00 8.08 2.53 3.65 5.86 1.52 7.01 5.16 61 E10_Aa NovelBoundary 1 62.23 21.58 7.39 16.05 7.72 70.36 27.87 3.66 9.37 1.64 15.42 0.00 61.20 13.48 4.45 4.10 0.00 6.59 0.00 0.00 0.00 0.00 4.35 62 ER10a ExonRegion 0 136.54 132.75 57.22 116.34 87.72 222.61 90.34 47.55 40.99 29.31 139.03 59.78 67.50 89.57 133.02 125.66 95.94 59.69 47.68 51.17 35.75 79.01 61.97 63 E10a_E11a KnownJunction 0 149.51 156.75 68.60 128.82 90.49 313.34 126.17 54.87 50.14 38.06 175.20 67.52 48.21 64.87 143.64 128.94 92.47 56.34 50.82 58.16 34.41 90.38 66.92 64 E10a_E12a NovelJunction 0 3.11 5.72 0.00 1.30 0.00 10.79 0.00 8.50 3.07 1.67 2.21 0.00 0.00 6.71 27.32 4.36 7.57 4.27 0.00 0.00 3.09 0.00 0.00 65 E11_Aa NovelBoundary 1 0.00 0.00 2.87 0.00 4.33 2.27 5.52 1.64 4.80 0.00 2.37 0.00 27.11 0.00 0.00 4.36 4.39 1.95 0.00 0.00 0.00 2.88 0.00 66 ER11a ExonRegion 0 122.45 105.22 64.15 121.15 102.76 222.61 75.87 57.15 56.14 29.40 149.62 82.82 77.62 98.67 134.61 125.82 107.52 76.41 65.16 54.86 28.82 85.89 73.63 67 E11a_E12a KnownJunction 0 167.59 120.04 102.72 161.85 160.10 256.27 100.65 61.90 50.93 37.31 153.04 56.87 53.24 111.13 213.98 143.64 99.95 81.17 126.31 64.56 26.01 109.12 70.08 68 E12_Aa NovelBoundary 0 12.15 10.00 1.18 12.32 0.00 12.32 20.36 11.46 11.89 7.68 2.26 0.00 0.00 2.47 13.35 7.18 0.00 1.78 0.00 5.69 0.00 0.00 0.00 69 ER12a ExonRegion 0 113.11 87.59 45.78 88.55 77.19 203.60 61.35 55.37 53.25 30.85 145.60 59.96 60.47 102.06 172.61 116.33 115.21 81.06 51.73 66.28 36.90 74.01 63.12 70 E12a_E13a KnownJunction 0 154.18 85.51 50.03 84.60 32.60 210.28 50.96 75.99 50.46 44.67 132.30 93.63 41.39 93.83 173.56 150.30 84.53 71.76 49.70 30.74 26.81 116.77 70.85 71 ER13a ExonRegion 0 148.16 97.69 75.04 110.13 60.61 225.36 72.13 73.80 64.00 41.75 160.31 111.79 92.11 121.91 198.68 127.86 113.15 99.50 68.90 70.87 42.66 110.36 73.30 72 E13_Da NovelBoundary 0 10.30 2.83 6.39 7.49 24.70 10.85 1.77 8.79 6.89 0.00 7.95 12.30 6.82 7.06 0.00 0.00 0.00 10.82 0.00 5.82 0.00 0.00 0.00 73 E13a_E14a KnownJunction 0 107.06 74.07 52.60 98.49 88.54 196.19 86.29 59.15 57.29 50.29 103.61 86.28 55.35 100.01 165.52 88.10 94.16 55.34 35.67 77.53 37.44 79.30 46.52 74 E13a_E15a KnownJunction 0 3.11 2.50 0.00 0.00 0.00 0.00 0.00 0.00 1.24 1.13 0.00 0.00 0.00 0.00 0.00 8.03 0.00 0.00 0.00 3.07 0.00 2.88 0.00 75 E14_Aa NovelBoundary 0 7.41 0.00 5.65 8.39 18.68 0.00 6.36 4.27 3.04 4.59 0.00 0.00 0.00 2.12 5.07 0.00 8.79 0.00 0.00 2.62 0.00 0.00 3.93 76 ER14a ExonRegion 0 63.89 36.53 39.23 65.36 48.16 95.98 30.65 52.69 42.13 33.51 75.39 64.94 45.35 57.30 98.70 45.63 39.19 21.46 21.53 29.22 16.00 64.59 18.14 77 E14_Da NovelBoundary 0 0.00 11.71 5.47 6.03 0.00 13.80 9.05 2.01 15.80 2.69 2.00 18.46 6.82 2.35 4.45 0.00 4.11 0.00 4.80 11.95 0.00 5.69 4.18 78 I14_SR2 SilentIntronRegion 0 4.37 5.67 1.24 2.85 5.81 3.47 1.06 8.30 5.57 0.24 2.28 0.30 4.47 1.52 3.92 6.87 3.77 14.96 5.08 8.00 3.31 0.93 8.17 79 Ix Intron 0 31.17 3.57 10.24 4.95 34.40 8.10 31.08 6.56 10.74 7.21 0.88 1.44 4.65 2.12 3.95 3.70 3.65 6.51 1.72 5.90 7.80 5.37 4.91 80 Ix_AR1 ActiveIntronRegion 0 46.63 1.94 23.89 5.78 28.21 9.92 33.00 11.22 12.48 7.50 0.51 1.87 5.51 3.14 7.36 2.34 6.07 10.37 2.25 7.26 9.84 6.36 7.72 81 Ix_AR2 ActiveIntronRegion 0 72.31 7.46 24.10 4.37 49.61 12.00 44.57 10.30 14.15 8.41 0.00 1.44 0.00 4.20 12.33 0.00 0.00 10.24 1.99 12.15 6.70 9.72 1.22 82 Ix_AR3 ActiveIntronRegion 0 72.24 5.66 16.04 7.23 69.69 10.13 37.88 5.34 19.65 10.92 0.00 6.78 0.00 1.20 12.87 0.00 0.57 12.13 0.00 4.35 4.12 8.24 4.98 83 Ix_SR1 SilentIntronRegion 0 45.57 3.04 13.81 5.76 41.18 6.06 25.74 6.11 9.51 4.58 0.29 2.19 2.64 1.49 2.73 2.41 1.03 3.94 0.52 3.37 4.14 2.58 3.08 84 Ix_AR4 ActiveIntronRegion 0 23.24 3.83 6.76 4.59 32.58 8.20 31.74 5.89 10.51 7.73 1.12 1.09 5.24 2.09 3.33 4.41 4.09 6.35 1.97 6.23 8.53 5.76 5.02 85 Ix Intron 0 45.63 8.01 25.69 6.82 49.23 11.72 30.86 10.97 16.40 10.59 2.12 4.70 3.24 2.41 1.88 4.99 3.84 9.14 2.47 5.36 15.50 7.67 6.07 86 Ix_AR1 ActiveIntronRegion 0 45.75 8.03 25.76 6.84 49.35 11.75 30.93 11.00 16.44 10.62 2.13 4.71 3.25 2.41 1.89 5.00 3.85 9.16 2.47 5.37 15.54 7.69 6.08 87 Ix Intron 0 20.89 3.99 17.46 3.30 34.96 3.08 25.35 6.57 7.95 5.27 0.49 3.95 4.36 1.12 2.46 1.92 1.20 3.12 0.89 3.28 5.50 3.21 1.89 88 Ix_AR1 ActiveIntronRegion 0 20.68 4.07 17.73 3.36 35.21 3.09 25.60 6.79 8.19 5.42 0.50 3.91 4.51 1.11 2.48 1.97 1.24 3.08 0.88 3.39 5.65 3.27 1.91 89 Ix_SR1 SilentIntronRegion 0 35.08 2.34 12.57 2.17 36.15 3.90 23.86 0.29 1.24 1.42 0.00 6.72 0.00 1.83 2.59 0.44 0.00 5.39 1.76 0.00 1.50 2.13 2.00 90 Ix Intron 0 14.92 4.20 11.06 4.20 33.35 1.04 21.50 3.30 7.47 2.19 0.28 0.76 3.30 0.38 2.56 1.06 0.94 1.70 0.45 4.09 2.04 0.74 0.42 91 Ix_SR1 SilentIntronRegion 0 17.60 4.36 11.85 4.54 25.74 0.54 26.37 4.40 7.88 1.85 0.00 0.60 3.40 1.06 3.33 0.87 0.00 2.87 0.93 4.24 2.93 0.81 0.00 92 ER15a ExonRegion 0 8.51 8.06 3.12 3.42 9.63 5.17 12.95 3.13 3.09 2.69 3.36 6.85 9.39 5.73 9.00 10.93 7.43 5.97 8.08 11.71 6.04 4.24 9.80