Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TSPAN14 Gene 0 101.41 55.22 60.05 40.77 67.82 43.74 32.87 66.84 62.59 36.61 19.23 33.31 19.81 60.59 56.06 36.13 3.46 66.42 33.54 42.19 158.34 104.18 88.57 2 429989 Transcript 0 0.02 0.81 0.00 0.00 0.00 1.89 0.01 0.00 0.07 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.51 0.00 0.00 0.00 3 481124 Transcript 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 4 372160 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 372157 Transcript 0 2.05 2.91 0.65 1.95 4.26 2.51 3.80 1.38 3.65 2.76 0.52 0.65 0.16 6.02 2.42 2.23 0.06 1.42 1.01 1.28 12.69 2.57 2.40 6 469149 Transcript 0 5.64 0.87 2.31 1.91 5.10 1.87 5.31 5.91 3.66 0.83 2.63 6.24 0.00 9.39 7.35 3.50 0.37 1.99 3.62 1.03 11.01 0.65 5.00 7 372164 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 372158 Transcript 0 3.78 0.00 0.00 0.00 3.40 3.63 0.00 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 8.50 0.00 0.00 2.40 2.97 1.58 1.53 3.84 9 341863 Transcript 0 0.00 2.96 1.60 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 4.80 3.20 9.39 6.00 0.00 10 372156 Transcript 0 1.19 0.30 0.56 0.12 0.81 0.09 0.36 0.30 1.04 0.03 0.71 0.35 0.68 0.65 0.42 0.93 0.16 0.69 0.00 0.54 0.65 0.52 0.88 11 265450 Transcript 0 21.23 3.10 5.11 5.92 10.59 7.14 6.48 6.02 5.81 2.44 2.85 4.75 2.17 8.76 5.63 6.87 0.93 6.61 3.73 4.06 24.38 7.15 7.58 12 IG19_AR1 ActiveIntergenicRegion 0 15.37 104.93 62.45 35.58 53.94 91.32 68.15 75.57 91.55 38.46 5.91 4.94 5.55 2.60 7.08 0.00 1.98 178.59 79.51 94.22 20.89 75.64 63.09 13 ER1a ExonRegion 0 0.02 0.81 0.00 0.00 0.00 1.89 0.01 0.00 0.07 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.51 0.00 0.00 0.00 14 E1_Ab KnownBoundary 0 0.00 6.31 0.00 0.00 0.00 14.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 15 ER1b ExonRegion 0 3.73 11.14 4.16 1.19 0.93 14.31 3.34 2.56 2.44 3.09 2.44 1.79 0.00 3.85 2.08 0.97 0.07 4.22 4.22 6.43 7.90 11.41 15.83 16 E1_Ac KnownBoundary 0 0.00 7.70 5.09 2.06 0.00 15.33 6.62 2.55 4.98 4.84 2.11 0.00 0.00 7.06 0.00 0.00 0.00 4.10 4.05 3.07 8.46 14.33 19.29 17 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 0.00 2.25 0.00 1.68 1.64 2.68 0.00 0.00 0.00 0.00 4.27 0.00 4.77 0.00 3.26 6.30 3.12 8.71 18 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E1_Af KnownBoundary 0 28.89 12.04 11.03 0.00 36.50 27.71 11.70 8.09 2.55 3.92 2.37 0.00 0.00 16.19 0.00 14.44 4.68 8.46 68.61 5.24 59.92 20.76 59.41 20 ER1c ExonRegion 0 16.74 11.09 8.58 1.36 16.05 28.84 11.19 7.23 2.47 5.73 3.34 4.33 0.00 13.44 11.61 7.57 3.30 8.40 45.46 8.51 42.07 25.95 56.60 21 ER1d ExonRegion 0 25.40 9.30 12.25 1.36 31.73 29.34 13.05 9.63 2.47 5.73 1.93 4.33 0.00 28.31 14.92 14.86 3.30 7.39 57.34 11.85 61.70 31.25 76.77 22 ER1e ExonRegion 0 25.40 10.17 12.25 1.36 32.11 29.34 13.24 10.37 3.71 5.73 1.93 4.33 0.00 27.61 20.31 14.86 3.30 7.39 57.34 10.64 61.70 37.50 73.42 23 ER1f ExonRegion 0 37.91 13.00 17.10 2.61 32.34 25.83 15.31 9.92 4.94 6.73 3.03 0.75 0.00 32.84 32.80 21.58 3.30 12.13 57.06 15.82 85.94 44.93 85.93 24 E1a_E3a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 8.29 0.00 0.00 4.80 5.94 0.00 3.06 7.68 25 E1a_E5a NovelJunction 0 24.23 13.29 1.83 0.00 12.31 13.63 10.95 7.52 4.98 1.67 2.37 0.00 0.00 21.84 9.27 16.06 0.00 6.14 8.47 5.94 38.24 19.17 38.41 26 E1a_E6a KnownJunction 0 44.16 9.21 21.85 11.85 8.15 0.00 8.21 10.31 10.16 11.07 6.79 0.00 0.00 4.77 11.62 16.15 0.00 17.70 4.24 18.47 57.76 30.37 40.29 27 ER1g ExonRegion 0 41.27 12.20 18.38 5.45 32.11 18.34 14.56 9.51 5.56 8.03 1.93 0.00 0.00 30.86 34.82 23.78 3.30 14.78 54.15 19.15 94.76 42.71 88.10 28 ER1h ExonRegion 0 38.49 11.95 17.23 7.67 25.25 13.52 10.59 11.23 7.41 8.10 4.59 0.00 0.00 20.40 28.11 21.36 1.24 15.01 31.85 22.07 81.95 39.59 68.09 29 ER2a ExonRegion 0 4.72 0.50 0.90 0.50 2.65 0.45 0.98 0.00 1.37 0.00 0.48 1.77 0.96 0.76 0.99 1.46 0.82 0.64 0.00 0.53 3.26 2.58 2.91 30 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER3a ExonRegion 0 1.48 0.20 0.00 0.00 5.35 1.97 0.00 0.00 1.73 0.00 0.00 0.00 0.00 1.18 0.15 4.24 0.08 0.32 0.00 3.78 1.54 0.00 0.22 32 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E3a_E5a KnownJunction 0 3.78 0.00 0.00 0.00 6.79 7.27 0.00 0.00 3.36 0.00 0.00 0.00 0.00 0.00 0.00 8.72 0.00 0.00 0.00 0.00 3.15 0.00 0.00 34 E4_Aa NovelBoundary 1 21.26 6.71 4.05 0.00 0.00 2.90 0.00 3.86 7.67 0.00 0.00 12.60 20.13 2.47 0.00 0.00 4.02 0.00 0.00 9.08 0.00 5.76 0.00 35 ER4a ExonRegion 0 1.25 0.98 1.90 0.11 1.39 0.00 0.80 1.48 3.84 0.13 0.39 0.00 2.44 0.00 1.10 3.21 0.00 2.83 0.00 2.19 0.00 0.00 1.47 36 E4_Da NovelBoundary 0 135.73 107.94 63.13 98.39 129.88 59.00 204.47 75.62 69.56 66.91 27.53 33.01 56.33 36.32 39.43 86.30 78.63 89.95 55.15 117.80 60.54 32.94 76.74 37 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER5a ExonRegion 0 15.18 6.26 9.78 5.68 10.17 6.74 10.52 14.38 14.23 8.80 11.02 6.33 4.39 15.73 8.33 8.68 1.24 6.38 10.46 10.38 51.67 25.83 21.64 39 E5a_E6a KnownJunction 0 20.08 3.35 9.76 12.99 0.00 18.23 0.00 43.87 30.90 20.12 21.43 26.26 6.82 35.32 27.07 23.16 0.00 21.22 55.53 20.01 95.38 80.15 40.04 40 ER6a ExonRegion 0 38.08 21.95 28.72 22.06 39.10 36.21 24.86 53.46 53.22 32.24 28.17 43.29 14.79 57.90 37.81 36.03 4.21 49.49 26.95 43.07 147.38 65.82 79.89 41 E6a_E7a KnownJunction 0 30.23 46.50 34.36 14.72 74.96 39.58 10.20 57.30 41.41 19.13 39.33 83.58 19.80 52.86 35.97 3.16 4.77 55.67 20.89 55.16 211.28 71.15 58.99 42 E6a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E6a_E10a KnownJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 44 E7_Aa NovelBoundary 0 12.59 0.00 1.54 3.50 4.07 2.61 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.90 0.00 4.68 0.00 0.00 7.66 2.88 4.35 45 ER7a ExonRegion 0 26.56 40.99 33.85 28.35 61.12 49.98 21.49 58.73 53.45 34.90 30.43 47.88 15.63 65.95 48.30 23.14 3.62 74.24 37.16 57.91 228.24 90.90 91.55 46 E7a_E8a KnownJunction 0 0.00 2.70 0.00 0.00 4.33 0.00 4.50 0.00 1.62 1.67 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 5.25 0.00 0.00 47 E7a_E8b KnownJunction 0 40.75 35.52 41.07 52.67 40.15 59.97 26.19 67.81 72.22 45.18 35.59 23.11 6.66 84.47 76.89 35.80 4.77 77.27 51.95 68.97 232.90 132.63 141.53 48 I7 Intron 0 8.93 2.13 4.52 3.97 9.15 4.03 11.87 5.75 4.37 1.07 1.35 15.01 1.23 5.30 7.15 4.04 0.12 2.69 1.33 1.86 11.84 3.27 6.66 49 I7_SR1 SilentIntronRegion 0 8.95 2.13 4.53 3.97 9.16 4.04 11.89 5.76 4.37 1.07 1.35 15.03 1.23 5.31 7.16 4.05 0.12 2.69 1.34 1.86 11.85 3.28 6.67 50 ER8a ExonRegion 0 4.09 3.12 1.31 3.91 4.19 5.01 3.09 2.77 5.68 3.86 1.03 1.30 0.31 9.74 4.84 4.46 0.11 2.83 2.02 2.55 20.13 5.14 4.80 51 ER8b ExonRegion 0 54.67 35.50 48.02 47.82 30.29 57.44 29.13 88.36 82.94 50.27 32.11 65.38 19.63 100.94 93.63 57.73 1.06 105.98 38.82 73.82 253.31 131.86 127.32 52 E8_Da KnownBoundary 0 83.35 31.97 69.25 43.28 65.45 46.17 45.58 99.44 81.36 52.30 43.85 18.61 20.62 117.90 90.12 46.14 0.00 146.58 26.54 71.33 238.52 97.18 113.62 53 E8a_E13b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER8c ExonRegion 0 39.07 49.53 62.83 39.34 59.48 39.58 35.53 80.34 76.36 50.17 39.81 42.05 21.56 111.43 79.33 54.56 1.90 133.68 35.19 61.80 277.29 119.12 101.84 55 E8b_E9a KnownJunction 0 58.38 86.70 58.72 50.34 53.82 98.64 57.01 99.44 79.63 56.22 49.59 38.86 19.15 156.22 125.84 78.61 0.00 154.66 44.99 92.36 416.38 199.87 117.63 56 E8b_E10a KnownJunction 0 0.00 2.96 1.60 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 4.80 3.20 9.39 6.00 0.00 57 ER9a ExonRegion 0 97.57 77.44 78.47 56.90 55.17 73.89 52.73 91.35 99.85 57.51 44.94 48.28 17.20 120.47 92.98 64.47 1.58 117.58 39.81 82.16 310.12 153.78 117.67 58 E9_Da KnownBoundary 0 3.78 6.58 6.30 3.86 7.98 0.00 23.98 3.33 6.63 1.34 0.00 6.30 0.00 14.48 4.45 10.60 0.00 2.40 0.00 2.81 17.92 5.39 0.00 59 E9a_E10a KnownJunction 0 181.44 129.06 85.21 66.66 127.67 77.68 81.88 92.46 131.51 65.36 52.80 37.51 20.45 177.12 118.05 102.37 4.77 159.35 66.73 71.97 395.62 208.32 172.18 60 ER9b ExonRegion 0 5.64 0.87 2.31 1.91 5.10 1.87 5.31 5.91 3.66 0.83 2.63 6.24 0.00 9.39 7.35 3.50 0.37 1.99 3.62 1.03 11.01 0.65 5.00 61 ER10a ExonRegion 0 126.34 73.39 86.03 58.61 82.84 76.71 35.84 92.12 114.39 66.47 40.05 48.35 29.18 127.56 103.96 69.96 2.67 120.73 57.26 91.74 339.32 169.79 153.73 62 E10a_E11a KnownJunction 0 129.65 69.72 94.94 60.37 141.68 172.46 37.89 83.67 121.79 71.37 70.18 40.21 27.43 159.34 103.59 48.45 4.77 123.74 65.88 120.74 389.07 164.35 218.10 63 E11_Aa NovelBoundary 0 18.15 6.31 14.87 5.73 44.06 10.05 22.83 9.45 13.69 1.40 4.58 0.00 14.61 4.89 0.00 0.00 0.00 4.68 6.96 2.75 11.43 8.57 3.33 64 ER11a ExonRegion 0 73.61 79.49 93.45 68.78 119.34 149.84 67.26 98.87 140.09 67.77 47.21 89.86 32.10 141.77 121.53 63.74 8.44 183.30 72.20 111.49 389.71 156.03 189.25 65 E11_Da NovelBoundary 0 30.67 2.96 11.77 10.39 107.39 21.01 20.62 15.77 5.79 5.00 2.68 6.30 0.00 10.07 10.75 0.00 4.77 2.57 8.38 6.20 22.86 7.84 21.60 66 E11a_E12b KnownJunction 1 69.94 105.97 88.73 79.28 125.21 133.39 114.73 105.11 146.29 52.78 33.90 147.05 26.13 147.98 150.07 83.82 12.72 206.11 82.45 114.54 383.20 191.78 200.60 67 E12_Aa NovelBoundary 0 36.15 8.55 6.50 3.43 32.43 11.30 16.83 7.89 11.63 3.28 2.58 12.30 0.00 8.83 13.35 8.63 4.11 4.19 4.14 9.14 17.11 11.45 24.33 68 ER12a ExonRegion 0 21.23 3.10 5.11 5.92 10.59 7.14 6.48 6.02 5.81 2.44 2.85 4.75 2.17 8.76 5.63 6.87 0.93 6.61 3.73 4.06 24.38 7.15 7.58 69 E12_Ab KnownBoundary 0 32.52 2.89 3.22 2.86 12.14 12.55 9.67 6.28 8.97 5.24 0.00 0.00 0.00 9.30 9.15 0.00 0.00 14.14 4.71 3.26 41.08 17.02 7.94 70 ER12b ExonRegion 0 90.32 76.83 86.97 72.62 99.21 101.51 78.93 120.41 130.92 65.33 33.12 74.11 40.28 145.58 138.55 99.68 5.71 187.93 77.92 91.54 391.67 250.06 226.02 71 E12a_E13a KnownJunction 0 141.28 143.66 95.00 51.54 166.98 85.24 119.02 127.21 131.22 86.44 76.76 77.28 27.76 152.57 129.55 73.91 0.00 128.92 69.46 106.87 492.55 189.52 197.27 72 ER13a ExonRegion 0 128.05 106.09 88.23 58.83 115.06 94.24 87.82 107.64 121.11 82.51 74.09 69.27 36.74 151.67 114.92 76.78 4.22 120.41 60.52 104.25 455.80 161.82 195.12 73 ER13b ExonRegion 0 132.65 97.58 89.22 85.24 84.03 94.65 56.57 123.71 119.34 84.67 45.80 68.07 33.89 158.34 126.12 67.78 2.94 172.85 75.30 92.83 376.30 226.16 181.78 74 E13_Db KnownBoundary 0 317.17 146.95 103.10 87.20 113.92 171.83 65.76 129.26 117.56 86.01 44.91 82.08 52.92 181.82 136.72 140.56 4.77 245.69 128.47 77.02 459.44 248.98 221.18 75 ER13c ExonRegion 0 143.55 80.09 89.02 65.36 90.46 101.90 66.89 117.34 119.12 85.24 43.53 47.33 30.47 155.79 131.48 81.72 3.49 182.72 81.87 80.41 388.17 198.10 192.88 76 E13_Dc KnownBoundary 0 156.18 70.05 83.53 73.72 138.46 117.60 122.77 81.20 148.55 83.67 29.74 6.30 0.00 158.40 128.07 55.20 7.67 170.95 106.83 107.70 395.87 175.99 117.89 77 ER13d ExonRegion 0 133.87 59.34 98.12 55.89 96.39 76.78 52.64 105.19 125.64 73.20 41.98 32.52 19.73 137.43 101.06 65.61 10.97 143.44 73.82 85.18 358.24 176.13 173.99 78 E13_Dd KnownBoundary 0 206.63 89.19 110.76 67.52 99.15 61.44 46.81 117.55 157.70 95.82 36.43 24.61 47.40 152.51 108.91 74.51 0.00 164.24 34.54 101.44 389.63 155.23 170.73 79 ER13e ExonRegion 0 215.16 122.47 120.43 85.01 134.47 97.34 67.64 148.12 131.59 77.94 40.88 68.55 53.05 132.26 122.33 73.47 7.39 129.47 72.21 86.57 312.43 225.08 192.61 80 E13_De KnownBoundary 0 82.24 57.42 35.13 49.51 216.98 46.39 52.02 76.97 56.94 29.01 16.21 65.27 13.64 47.85 22.50 4.02 0.00 23.71 25.79 54.84 58.87 99.69 35.85 81 ER13f ExonRegion 0 88.13 42.86 48.61 31.79 64.31 35.17 28.24 72.69 63.60 31.53 13.57 35.51 11.29 36.56 41.96 31.07 1.58 52.60 30.29 31.67 123.31 108.84 74.15 82 E13_Ab KnownBoundary 0 143.06 54.92 84.44 65.16 116.72 61.67 20.14 101.74 114.70 64.58 28.85 24.31 19.80 75.52 56.12 41.19 0.00 101.52 68.14 45.13 198.98 193.99 101.07 83 ER13g ExonRegion 0 122.16 61.78 77.91 50.15 73.76 33.27 26.02 58.60 59.33 34.97 13.00 27.33 11.87 41.52 40.66 28.74 1.96 62.69 25.39 37.35 139.71 88.39 76.53 84 E13_Df KnownBoundary 1 366.58 150.24 105.14 95.36 257.81 109.31 199.35 120.96 97.19 97.03 150.99 13.05 55.52 70.34 43.51 241.13 177.65 90.53 166.78 186.89 211.71 121.79 145.71 85 ER13h ExonRegion 0 116.77 57.67 58.56 31.39 85.19 23.77 31.11 42.91 31.14 20.25 8.78 23.60 22.58 31.06 40.53 22.24 6.84 30.65 19.13 26.50 66.53 66.87 50.06 86 IG20 Intergenic 0 9.68 5.73 6.43 4.35 12.43 4.85 5.37 7.71 10.03 4.90 3.61 0.80 1.55 2.23 1.98 1.41 0.21 4.65 1.79 2.03 8.28 4.41 5.15 87 IG20_AR2 ActiveIntergenicRegion 0 9.50 3.98 7.98 4.73 8.88 2.97 2.42 5.85 6.28 1.66 0.00 0.00 0.00 0.00 0.19 1.83 0.00 3.26 1.15 0.63 11.30 0.93 0.19 88 IG20_SR1 SilentIntergenicRegion 0 10.79 6.39 7.07 4.61 11.89 4.02 5.49 8.94 11.24 5.36 1.30 0.45 1.36 1.83 1.96 1.27 0.31 5.67 2.10 1.72 11.36 6.00 7.27 89 IG20_AR3 ActiveIntergenicRegion 0 12.28 7.63 6.56 4.80 18.76 7.79 8.07 7.65 12.29 6.00 6.92 1.34 2.26 2.41 2.03 0.83 0.01 4.74 2.42 2.31 6.17 3.69 3.21