Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	PPIF	Gene	0	119.29	132.03	278.00	75.73	95.44	106.71	93.76	123.16	86.57	74.42	782.60	238.22	99.61	548.13	405.37	297.73	265.74	189.60	96.12	144.15	124.96	245.67	234.06
2	498681	Transcript	0	0.00	0.00	3.43	0.00	2.41	0.18	0.00	0.00	0.00	0.23	2.71	0.00	0.00	2.44	0.29	3.57	0.33	2.22	0.32	0.21	1.76	1.46	1.76
3	394579	Transcript	0	0.00	0.00	4.88	0.00	0.00	0.00	0.00	0.00	1.24	0.00	4.37	0.00	0.00	2.47	8.90	0.00	4.77	0.00	0.00	18.09	0.00	0.00	8.45
4	225174	Transcript	1	129.09	135.39	361.97	77.19	148.75	168.62	103.61	132.78	92.81	70.32	847.46	182.02	62.11	556.21	447.50	303.46	297.28	206.82	95.33	180.09	146.46	162.72	228.18
5	472580	Transcript	0	2.04	1.94	2.75	0.00	0.65	1.03	3.64	2.08	1.55	1.92	15.19	1.61	0.94	7.08	4.13	4.87	7.64	6.59	1.29	1.03	2.18	6.06	20.77
6	492149	Transcript	0	1.92	2.10	10.65	3.10	0.85	6.37	4.37	5.22	6.74	3.50	51.25	8.11	4.64	35.53	22.33	19.08	12.86	14.20	9.26	12.09	10.25	43.89	56.78
7	448165	Transcript	0	14.19	10.65	15.19	9.74	6.35	25.70	8.83	9.95	7.31	3.37	80.43	12.44	21.05	44.97	31.30	33.79	34.63	22.24	5.38	11.67	20.10	51.81	51.50
8	ER1a	ExonRegion	0	0.00	0.00	3.43	0.00	2.41	0.18	0.00	0.00	0.00	0.23	2.71	0.00	0.00	2.44	0.29	3.57	0.33	2.22	0.32	0.21	1.76	1.46	1.76
9	ER1b	ExonRegion	1	4.81	1.85	6.68	0.00	9.73	36.51	6.26	1.89	0.34	7.51	192.41	0.00	0.00	151.04	35.87	99.43	104.73	31.75	16.51	13.35	47.28	22.92	121.74
10	ER1c	ExonRegion	1	16.16	4.07	11.03	0.00	18.73	65.68	16.73	6.91	2.47	12.93	335.62	0.00	0.00	363.80	67.52	148.88	152.74	46.70	35.04	25.34	65.91	43.38	186.88
11	ER1d	ExonRegion	1	12.28	13.28	15.52	1.21	10.65	41.27	15.49	7.24	6.64	10.21	244.71	13.73	7.39	155.30	61.92	61.49	94.64	26.94	14.62	27.89	48.34	22.26	56.32
12	E1_Ae	KnownBoundary	1	0.00	5.59	36.69	3.83	8.32	8.06	0.00	12.77	13.08	20.66	614.47	11.70	12.66	216.38	107.79	27.69	182.33	25.62	12.80	39.88	126.95	31.54	46.78
13	ER1e	ExonRegion	1	5.75	17.75	70.58	11.48	4.47	15.88	7.76	27.63	28.33	35.84	503.58	36.37	8.06	507.24	280.57	127.45	151.80	94.52	44.37	86.83	87.29	87.78	110.31
14	E1a_E2a	KnownJunction	1	28.08	29.14	123.50	9.76	4.16	27.60	14.49	41.53	35.16	50.04	453.27	52.97	24.84	542.24	382.84	240.28	134.83	123.90	96.76	149.44	64.25	112.30	187.03
15	E2a_E3a	KnownJunction	0	15.04	37.82	189.76	49.31	58.57	60.08	29.15	78.08	43.55	43.73	718.97	155.00	38.80	495.50	436.25	310.94	212.06	212.70	103.16	172.32	160.56	136.43	183.02
16	ER2a	ExonRegion	1	21.92	24.34	160.29	31.92	26.24	46.55	21.18	66.57	47.49	49.87	663.48	68.29	26.32	518.15	381.47	285.42	186.77	206.83	107.58	168.70	111.32	141.34	180.08
17	ER3a	ExonRegion	1	31.34	59.59	216.97	48.80	47.86	82.95	47.20	87.18	65.49	65.63	872.30	149.68	44.48	574.37	411.46	278.41	274.79	191.75	70.65	166.34	180.93	145.57	170.69
18	E3_Da	KnownBoundary	0	0.00	3.22	15.64	8.96	3.65	26.29	10.86	13.14	10.85	12.97	60.33	13.05	0.00	23.78	25.59	13.07	20.76	16.83	15.81	26.85	13.78	21.31	44.13
19	E3a_E4a	KnownJunction	0	49.49	86.37	269.03	55.54	70.29	98.07	58.03	88.10	66.78	96.19	937.18	160.85	88.79	670.26	458.99	268.39	335.76	187.83	61.65	165.80	169.64	144.51	123.18
20	ER3b	ExonRegion	0	1.92	2.10	10.65	3.10	0.85	6.37	4.37	5.22	6.74	3.50	51.25	8.11	4.64	35.53	22.33	19.08	12.86	14.20	9.26	12.09	10.25	43.89	56.78
21	E3_Db	NovelBoundary	0	3.41	3.35	10.59	3.90	4.33	25.38	4.24	13.64	4.43	1.61	51.17	13.20	0.00	66.22	17.80	40.42	22.44	8.91	14.12	8.56	4.88	57.07	89.63
22	I3	Intron	0	7.69	4.33	11.26	4.10	6.19	8.35	6.81	7.76	7.30	7.09	48.04	6.09	4.44	42.25	15.64	18.55	18.06	11.84	8.54	14.30	9.79	48.27	62.75
23	I3_SR1	SilentIntronRegion	0	5.05	4.01	13.65	4.38	6.71	9.07	6.99	8.99	8.20	7.88	52.72	5.11	3.45	46.07	17.52	20.04	19.83	13.33	9.25	14.39	11.18	49.01	67.06
24	I3_AR1	ActiveIntronRegion	0	13.93	5.18	6.20	3.65	5.26	7.07	6.62	5.29	5.57	5.60	39.23	8.55	6.85	34.94	11.89	15.77	14.79	8.91	7.18	14.58	7.01	48.21	54.98
25	ER4a	ExonRegion	0	91.60	115.24	295.97	66.12	58.09	102.52	77.04	121.19	84.76	84.50	1151.75	168.98	71.37	909.89	577.38	332.11	420.13	177.00	97.37	223.95	226.16	257.75	222.43
26	E4_Da	KnownBoundary	0	0.00	2.57	6.48	1.37	0.00	7.89	8.74	4.89	0.00	0.00	16.48	7.65	6.33	19.19	9.64	19.65	17.86	12.56	0.00	10.99	5.56	10.96	29.19
27	E4a_E5a	KnownJunction	0	94.83	174.64	408.35	111.77	92.36	125.55	108.95	188.90	112.96	108.36	1334.76	337.91	86.03	857.44	621.42	387.76	475.08	241.42	99.86	280.28	244.14	254.06	235.35
28	E4a_E6b	KnownJunction	0	0.00	0.00	4.88	0.00	0.00	0.00	0.00	0.00	1.24	0.00	4.37	0.00	0.00	2.47	8.90	0.00	4.77	0.00	0.00	18.09	0.00	0.00	8.45
29	E4_Db	KnownBoundary	0	10.37	3.09	8.57	0.00	3.74	2.67	8.13	5.09	5.21	1.58	17.48	6.30	0.00	14.24	8.90	4.02	4.02	11.77	4.52	0.00	0.00	20.64	43.88
30	ER4b	ExonRegion	0	4.23	1.33	10.37	0.52	0.10	4.73	8.10	7.11	3.94	1.19	22.82	6.49	1.44	15.62	8.70	12.35	10.41	15.35	2.33	4.34	3.64	17.71	42.81
31	ER4c	ExonRegion	0	4.07	3.87	5.51	0.00	1.30	2.06	7.28	4.16	3.09	3.83	30.37	3.22	1.88	14.15	8.26	9.74	15.28	13.18	2.58	2.07	4.37	12.12	41.53
32	E4c_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	I4	Intron	0	4.30	5.51	10.98	1.55	4.31	4.51	6.62	6.76	7.17	2.61	35.69	3.45	1.64	19.33	9.85	14.35	17.34	12.92	8.63	5.95	9.33	18.54	49.76
34	I4_SR1	SilentIntronRegion	0	3.60	5.79	11.71	1.45	4.63	5.53	6.62	7.84	7.13	2.84	39.92	4.75	1.96	19.92	7.46	14.40	17.46	11.52	9.94	5.43	7.50	20.96	52.25
35	ER5a	ExonRegion	0	112.57	134.99	386.15	103.56	142.24	213.47	143.32	171.82	117.40	106.90	1363.76	256.07	105.83	973.17	668.20	462.83	487.62	295.76	150.59	252.29	253.69	309.65	313.37
36	E5a_E6a	KnownJunction	0	0.00	0.00	5.03	9.66	0.00	21.18	6.23	2.18	5.30	1.67	37.85	0.00	13.96	28.61	10.75	30.50	32.63	10.90	0.00	6.52	15.75	43.54	18.95
37	E5a_E6b	KnownJunction	0	125.58	132.02	457.76	89.60	223.94	270.70	147.81	172.47	110.50	90.36	1412.78	257.18	101.29	932.31	719.45	444.16	439.55	272.80	118.59	262.57	219.62	152.17	305.69
38	I5	Intron	0	21.73	19.47	31.24	7.53	15.91	11.20	12.73	21.30	16.12	8.49	65.98	15.93	11.37	36.17	17.12	31.96	24.61	33.90	10.90	14.13	11.49	50.84	74.76
39	I5_AR1	ActiveIntronRegion	0	12.04	15.16	19.75	6.87	11.08	8.09	14.29	17.74	12.08	10.10	53.57	10.97	7.92	34.18	14.22	22.03	19.51	24.94	7.69	12.24	7.83	33.63	58.54
40	I5_SR1	SilentIntronRegion	0	15.00	21.73	32.61	4.54	16.82	3.85	11.86	15.46	15.76	9.73	58.82	12.86	10.18	34.20	14.63	27.60	21.22	30.54	7.46	11.55	10.29	52.27	71.07
41	I5_AR2	ActiveIntronRegion	0	17.64	20.34	26.96	6.81	34.34	5.50	15.89	16.42	18.73	11.47	57.99	8.66	4.69	19.76	2.90	37.65	31.91	22.17	3.19	4.61	7.71	39.24	70.48
42	I5_SR2	SilentIntronRegion	0	25.09	24.46	25.40	8.08	17.69	11.41	13.75	21.00	18.96	8.65	66.45	16.13	6.16	44.94	19.78	33.03	22.44	29.96	10.29	8.22	14.32	49.49	72.15
43	I5_AR3	ActiveIntronRegion	0	27.18	20.13	39.93	8.11	17.92	13.90	11.58	24.28	17.61	7.35	74.23	19.26	15.38	34.91	18.40	37.99	28.72	41.08	13.49	17.64	12.90	61.52	85.87
44	E6_Aa	NovelBoundary	0	91.35	44.01	72.79	33.83	25.04	45.09	46.19	44.85	30.21	8.06	94.39	25.21	0.00	36.67	54.76	81.60	25.34	75.24	31.34	17.39	11.80	87.38	149.73
45	ER6a	ExonRegion	1	28.39	21.30	25.36	9.82	12.70	30.21	11.43	17.72	9.33	5.08	123.00	24.88	28.14	61.33	51.85	37.08	36.62	33.58	10.77	16.82	24.45	60.09	84.04
46	E6_Ab	KnownBoundary	0	38.30	28.22	46.39	12.05	16.13	11.36	12.45	24.36	11.43	4.81	82.55	6.30	56.00	37.91	46.11	19.65	35.72	33.83	22.97	9.14	32.19	27.31	74.69
47	ER6b	ExonRegion	0	177.72	200.70	495.80	141.84	169.09	205.08	177.13	233.46	163.97	140.14	1742.20	494.20	259.47	1232.12	939.79	725.02	584.40	465.12	224.30	293.94	267.20	487.88	505.47
48	E6_Da	KnownBoundary	0	165.21	276.46	441.91	133.95	254.16	234.58	233.44	164.87	148.26	150.88	1326.91	338.81	226.77	970.28	513.38	510.89	480.22	257.30	98.73	184.08	202.75	367.34	276.32
49	ER6c	ExonRegion	0	226.87	249.81	466.51	136.98	191.19	187.91	186.21	224.98	145.87	133.99	1319.60	512.42	204.86	903.29	664.41	455.85	391.31	252.63	137.36	215.23	167.26	427.24	359.24
50	E6_Db	KnownBoundary	1	295.83	157.60	429.73	127.52	121.65	102.84	109.97	157.89	105.32	73.17	425.84	230.02	13.64	334.39	223.99	240.62	257.97	209.01	98.17	149.82	78.09	263.55	208.80
51	ER6d	ExonRegion	0	132.61	138.76	266.18	64.77	73.56	66.54	59.40	93.09	75.13	50.28	282.14	106.86	22.92	180.10	175.55	162.75	155.00	140.84	72.06	97.62	73.30	173.27	150.67