Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ACTA2 Gene 0 471.92 63.01 1208.96 213.49 294.84 111.26 106.74 217.25 109.99 241.63 16.32 23.56 52.34 60.39 110.96 59.99 48.49 25.77 9.02 10.47 498.40 134.87 72.88 2 458208 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.05 0.00 0.00 5.15 4.52 4.40 0.00 0.00 1.72 0.00 5.64 2.56 0.00 3 415557 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 458159 Transcript 0 3.78 0.00 0.00 3.50 3.99 0.00 2.25 4.76 0.00 2.93 0.00 12.45 0.00 21.07 26.70 17.94 11.78 5.93 0.00 0.00 66.10 5.76 4.35 5 482085 Transcript 0 9.77 7.75 9.98 5.19 29.32 2.00 22.15 6.62 7.25 2.18 0.53 0.97 3.87 1.14 2.66 0.01 1.20 4.11 1.45 7.09 2.40 1.69 2.41 6 488967 Transcript 0 22.00 10.69 32.46 5.58 48.05 10.14 31.73 10.75 9.71 6.39 2.25 11.52 9.13 3.53 5.73 10.46 6.14 5.14 7.02 12.56 7.32 4.12 5.46 7 224784 Transcript 0 20.11 0.00 0.00 0.00 6.69 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 8 480297 Transcript 0 30.42 4.77 16.74 5.02 19.46 9.77 28.73 8.38 21.18 5.91 1.26 7.18 5.18 2.71 2.88 10.72 2.22 19.88 10.69 7.43 11.86 7.41 5.26 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.05 0.00 0.00 5.15 4.52 4.40 0.00 0.00 1.72 0.00 5.64 2.56 0.00 10 E1_Ab KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 2.61 0.00 0.00 0.00 0.00 12.69 0.00 0.00 7.12 13.35 18.88 0.00 3.90 4.33 0.00 11.74 8.33 3.84 11 ER1b ExonRegion 0 9.92 0.00 0.00 0.00 0.00 1.65 4.41 0.00 0.00 0.00 2.69 0.00 3.86 1.43 3.30 1.46 1.49 0.00 1.44 0.00 4.19 1.55 0.00 12 E1_Ac KnownBoundary 0 34.30 0.00 3.67 1.80 0.00 8.46 12.50 2.09 3.15 0.00 0.00 0.00 14.28 11.54 8.90 15.98 13.18 1.82 0.00 0.00 43.18 17.51 12.98 13 ER1c ExonRegion 0 10.85 0.51 2.61 2.12 4.62 2.50 5.07 2.87 0.65 2.21 5.28 3.97 3.84 17.96 29.07 9.30 11.06 2.35 2.83 0.41 104.59 18.60 10.15 14 E1_Da KnownBoundary 0 0.00 0.00 5.20 0.00 0.00 0.00 0.00 4.52 2.69 1.58 0.00 6.00 0.00 9.48 4.45 6.84 11.87 0.00 4.24 0.00 89.70 24.06 14.94 15 E1a_E3a KnownJunction 0 3.78 0.00 0.00 3.50 3.99 0.00 2.25 4.76 0.00 2.93 0.00 12.45 0.00 21.07 26.70 17.94 11.78 5.93 0.00 0.00 66.10 5.76 4.35 16 ER1d ExonRegion 0 4.08 1.35 8.24 3.68 10.06 7.11 6.64 6.18 2.43 6.14 6.12 7.93 9.49 51.89 73.89 31.87 36.47 8.01 2.15 2.08 328.35 35.97 25.93 17 E1b_E3a KnownJunction 0 10.96 3.09 12.51 9.59 37.69 28.79 16.16 12.28 6.94 10.31 9.90 6.30 26.78 71.22 145.99 57.08 66.95 24.21 12.42 3.26 451.47 65.70 22.79 18 Ix_AR1 ActiveIntronRegion 0 2.01 0.36 2.38 2.84 3.35 0.33 2.10 1.84 2.31 1.38 8.91 4.34 4.74 9.43 20.00 5.12 8.17 3.35 0.57 1.51 11.11 14.34 20.96 19 ER2a ExonRegion 0 1424.81 111.24 590.63 87.28 619.58 268.35 180.60 110.56 64.77 153.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.16 0.00 7.56 82.68 32.80 17.29 20 E2_Da NovelBoundary 0 21.86 0.00 1.57 1.60 25.47 0.00 21.95 10.80 3.56 0.00 7.53 0.00 0.00 0.00 0.00 3.67 4.21 2.07 0.00 0.00 10.56 0.00 3.67 21 E2a_E3a KnownJunction 0 9672.38 689.22 2988.45 447.80 4296.69 1752.85 1207.32 572.24 336.92 742.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.16 0.00 34.39 441.03 165.70 104.57 22 ER2b ExonRegion 0 4887.70 402.14 2169.98 320.62 2324.56 1047.10 685.48 427.47 248.34 553.31 0.12 0.00 0.00 0.71 0.36 0.56 0.00 21.94 0.00 22.61 302.18 110.95 66.99 23 ER3a ExonRegion 0 1228.35 114.63 1966.80 263.63 647.25 313.83 209.13 370.91 219.37 461.08 26.22 26.75 68.22 115.71 195.80 111.04 89.38 49.72 10.71 19.15 979.01 194.45 121.83 24 E3_Da KnownBoundary 0 13.48 9.41 10.53 3.90 3.74 0.00 12.45 2.18 6.31 0.00 0.00 0.00 6.49 7.06 0.00 0.00 0.00 11.44 0.00 8.31 10.56 2.33 0.00 25 E3a_E4a KnownJunction 0 510.24 78.28 3764.53 430.55 179.37 45.31 53.75 677.31 373.43 854.96 36.64 23.41 75.64 151.98 314.98 136.80 153.44 67.98 26.07 32.66 1336.80 265.20 147.93 26 ER3b ExonRegion 0 9.77 7.75 9.98 5.19 29.32 2.00 22.15 6.62 7.25 2.18 0.53 0.97 3.87 1.14 2.66 0.01 1.20 4.11 1.45 7.09 2.40 1.69 2.41 27 Ix Intron 0 14.92 4.20 11.06 4.20 33.35 1.04 21.50 3.30 7.47 2.19 0.28 0.76 3.30 0.38 2.56 1.06 0.94 1.70 0.45 4.09 2.04 0.74 0.42 28 Ix_SR1 SilentIntronRegion 0 17.60 4.36 11.85 4.54 25.74 0.54 26.37 4.40 7.88 1.85 0.00 0.60 3.40 1.06 3.33 0.87 0.00 2.87 0.93 4.24 2.93 0.81 0.00 29 ER4a ExonRegion 0 409.95 78.35 3349.22 534.66 929.09 282.46 158.64 580.29 343.84 672.49 50.45 36.99 129.98 169.80 284.41 192.80 168.91 81.06 22.52 18.62 1438.54 378.36 208.73 30 E4_Da KnownBoundary 0 25.26 16.18 44.08 5.23 96.10 5.45 20.98 3.66 5.61 4.06 0.00 0.00 0.00 0.00 9.64 3.76 0.00 4.23 0.00 3.20 13.47 0.00 0.00 31 E4a_E5a KnownJunction 1 775.54 93.80 2825.71 540.19 2434.21 786.31 460.13 510.18 324.74 611.70 193.00 30.76 124.02 208.67 245.38 212.08 188.59 101.77 41.13 32.53 1411.92 440.15 211.36 32 ER4b ExonRegion 0 22.00 10.69 32.46 5.58 48.05 10.14 31.73 10.75 9.71 6.39 2.25 11.52 9.13 3.53 5.73 10.46 6.14 5.14 7.02 12.56 7.32 4.12 5.46 33 E4_Db NovelBoundary 0 2014.80 1394.36 1400.51 1878.25 1484.81 587.84 1633.45 1712.05 1740.23 1250.88 356.41 456.30 537.30 128.08 233.14 875.92 720.43 1080.15 850.47 1105.58 342.80 255.96 618.11 34 Ix Intron 0 20.89 3.99 17.46 3.30 34.96 3.08 25.35 6.57 7.95 5.27 0.49 3.95 4.36 1.12 2.46 1.92 1.20 3.12 0.89 3.28 5.50 3.21 1.89 35 Ix_SR1 SilentIntronRegion 0 35.08 2.34 12.57 2.17 36.15 3.90 23.86 0.29 1.24 1.42 0.00 6.72 0.00 1.83 2.59 0.44 0.00 5.39 1.76 0.00 1.50 2.13 2.00 36 Ix_AR1 ActiveIntronRegion 0 20.68 4.07 17.73 3.36 35.21 3.09 25.60 6.79 8.19 5.42 0.50 3.91 4.51 1.11 2.48 1.97 1.24 3.08 0.88 3.39 5.65 3.27 1.91 37 E5_Aa NovelBoundary 0 19.19 12.30 19.99 3.36 26.57 2.33 37.19 15.20 14.81 12.38 0.00 6.30 0.00 7.42 21.51 6.92 0.00 29.47 0.00 14.64 9.39 0.00 0.00 38 ER5a ExonRegion 0 963.85 191.27 2950.36 572.60 858.05 552.42 407.62 533.53 310.93 667.99 48.48 56.87 139.39 176.08 269.40 182.42 184.61 80.95 20.12 23.40 1526.93 424.89 246.60 39 E5a_E6a KnownJunction 0 2472.51 223.97 2949.51 554.01 469.36 170.02 163.27 593.97 353.03 779.08 69.33 74.87 157.94 198.48 324.37 162.86 257.32 55.63 22.21 2.43 2027.66 466.35 200.52 40 E6_Aa NovelBoundary 0 28.08 8.68 16.26 3.03 35.48 0.00 51.76 6.70 20.37 9.19 4.47 0.00 5.84 2.35 8.90 3.50 4.30 15.59 0.00 6.52 20.94 2.33 3.76 41 ER6a ExonRegion 0 1550.66 120.01 2727.24 509.82 318.00 115.57 127.82 561.87 286.07 676.17 46.30 47.22 121.50 156.99 254.08 126.79 113.43 44.63 12.14 11.34 1220.98 318.34 135.88 42 E6_Da NovelBoundary 0 7.11 21.64 10.82 1.43 8.66 4.66 15.10 7.19 12.01 11.95 0.00 6.00 6.49 0.00 0.00 3.25 0.00 18.20 0.00 8.82 35.03 9.31 7.51 43 E6a_E7a KnownJunction 0 2384.35 197.73 3009.65 617.10 385.99 154.12 141.28 571.09 274.33 701.31 54.01 37.36 130.35 212.02 272.33 118.09 133.99 43.15 17.69 13.93 1152.33 244.63 155.79 44 ER7a ExonRegion 0 2210.14 211.19 3036.48 576.73 606.88 215.23 224.58 549.53 305.29 634.05 43.02 82.71 143.77 176.22 268.85 138.09 131.12 80.90 19.74 16.71 1502.54 344.55 209.95 45 E7_Da KnownBoundary 0 45.86 11.64 22.65 4.93 33.19 5.79 25.75 6.24 25.84 7.82 0.00 0.00 0.00 7.00 16.56 3.50 0.00 18.86 0.00 9.72 10.93 0.00 0.00 46 E7a_E8a KnownJunction 1 1364.61 337.77 3940.55 739.23 762.65 256.33 364.03 680.31 304.94 656.34 35.27 88.38 221.41 183.18 364.79 163.03 124.92 69.72 21.84 21.16 1454.36 370.34 257.63 47 ER7b ExonRegion 0 30.42 4.77 16.74 5.02 19.46 9.77 28.73 8.38 21.18 5.91 1.26 7.18 5.18 2.71 2.88 10.72 2.22 19.88 10.69 7.43 11.86 7.41 5.26 48 Ix Intron 0 45.63 8.01 25.69 6.82 49.23 11.72 30.86 10.97 16.40 10.59 2.12 4.70 3.24 2.41 1.88 4.99 3.84 9.14 2.47 5.36 15.50 7.67 6.07 49 Ix_AR1 ActiveIntronRegion 0 45.75 8.03 25.76 6.84 49.35 11.75 30.93 11.00 16.44 10.62 2.13 4.71 3.25 2.41 1.89 5.00 3.85 9.16 2.47 5.37 15.54 7.69 6.08 50 ER8a ExonRegion 0 529.71 137.04 4215.37 752.34 499.95 219.40 244.55 657.99 297.44 692.74 37.98 61.49 139.92 145.78 313.18 156.84 94.21 43.39 19.48 18.72 1224.79 407.83 208.53 51 E8_Da NovelBoundary 0 16.23 6.12 1.63 1.96 17.15 2.27 27.69 2.09 2.95 2.85 9.32 0.00 6.82 4.59 0.00 15.47 3.55 17.37 0.00 18.86 0.00 0.00 0.00 52 E8a_E9a KnownJunction 0 2648.99 207.59 6762.09 1243.60 1075.21 349.46 356.97 1006.89 410.04 968.99 87.29 107.89 162.16 163.05 430.81 287.70 173.54 68.94 41.51 24.54 2187.29 569.47 288.53 53 ER9a ExonRegion 0 1558.19 243.39 3933.84 728.39 1084.74 288.33 327.72 690.59 280.26 722.01 49.20 72.34 176.52 153.12 356.52 167.19 120.65 57.51 21.54 19.73 1373.61 396.73 196.58 54 E9_Da NovelBoundary 0 21.71 0.00 4.91 7.46 29.20 2.38 21.95 0.00 10.94 6.55 0.00 0.00 0.00 2.41 0.00 7.52 0.00 25.25 0.00 6.07 8.22 0.00 3.67 55 E9a_E10a KnownJunction 1 1016.55 155.89 3039.37 558.90 692.53 164.45 230.22 664.66 227.92 642.97 46.59 30.31 175.15 143.33 311.52 155.60 114.63 39.17 24.57 17.45 1262.24 286.08 147.34 56 Ix Intron 0 31.17 3.57 10.24 4.95 34.40 8.10 31.08 6.56 10.74 7.21 0.88 1.44 4.65 2.12 3.95 3.70 3.65 6.51 1.72 5.90 7.80 5.37 4.91 57 Ix_AR4 ActiveIntronRegion 0 23.24 3.83 6.76 4.59 32.58 8.20 31.74 5.89 10.51 7.73 1.12 1.09 5.24 2.09 3.33 4.41 4.09 6.35 1.97 6.23 8.53 5.76 5.02 58 Ix_SR1 SilentIntronRegion 0 45.57 3.04 13.81 5.76 41.18 6.06 25.74 6.11 9.51 4.58 0.29 2.19 2.64 1.49 2.73 2.41 1.03 3.94 0.52 3.37 4.14 2.58 3.08 59 Ix_AR3 ActiveIntronRegion 0 72.24 5.66 16.04 7.23 69.69 10.13 37.88 5.34 19.65 10.92 0.00 6.78 0.00 1.20 12.87 0.00 0.57 12.13 0.00 4.35 4.12 8.24 4.98 60 Ix_AR2 ActiveIntronRegion 0 72.31 7.46 24.10 4.37 49.61 12.00 44.57 10.30 14.15 8.41 0.00 1.44 0.00 4.20 12.33 0.00 0.00 10.24 1.99 12.15 6.70 9.72 1.22 61 Ix_AR1 ActiveIntronRegion 0 46.63 1.94 23.89 5.78 28.21 9.92 33.00 11.22 12.48 7.50 0.51 1.87 5.51 3.14 7.36 2.34 6.07 10.37 2.25 7.26 9.84 6.36 7.72 62 E10_Aa NovelBoundary 0 63.72 0.00 31.05 2.80 49.41 13.29 14.97 8.50 12.41 8.19 2.05 0.00 0.00 0.00 8.90 0.00 0.00 17.45 0.00 3.26 11.98 12.12 3.67 63 ER10a ExonRegion 0 220.99 24.56 949.56 154.65 214.25 65.00 71.92 195.64 67.39 193.73 8.86 16.62 47.63 47.34 104.51 46.19 34.64 15.16 4.20 3.14 352.34 117.15 51.85 64 ER10b ExonRegion 0 20.11 0.00 0.00 0.00 6.69 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00