Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KIAA1128 Gene 0 47.28 92.40 62.96 51.83 103.43 326.82 90.58 125.17 251.84 54.04 60.80 67.04 76.10 36.39 16.01 27.81 35.85 110.13 34.10 116.51 42.83 108.54 63.50 2 359979 Transcript 0 3.76 6.32 3.70 2.52 3.67 22.26 14.84 6.18 11.76 3.54 6.65 2.95 4.69 5.33 4.17 5.31 2.74 5.30 4.21 6.93 3.70 2.41 10.26 3 372088 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 224756 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 434844 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 494144 Transcript 0 0.00 1.54 1.09 0.95 0.51 1.00 3.32 1.46 2.90 1.29 0.74 4.00 0.00 0.00 0.77 0.00 0.00 0.79 1.25 2.07 0.00 0.00 0.00 7 494586 Transcript 0 7.45 3.05 4.47 0.51 8.39 4.10 3.64 0.64 3.33 1.28 0.00 0.00 0.00 0.00 2.93 0.74 0.00 0.00 0.00 1.06 14.03 6.23 8.82 8 493409 Transcript 0 0.00 0.00 0.00 0.00 0.00 3.91 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 498300 Transcript 0 6.79 94.26 43.22 37.53 37.07 312.70 24.88 92.65 225.68 31.13 0.00 0.04 0.00 0.05 0.00 0.00 0.00 267.44 41.03 160.82 0.00 0.00 0.05 10 466105 Transcript 0 0.00 1.27 5.65 0.60 0.40 0.81 3.03 0.40 2.31 0.00 2.85 4.05 1.14 1.10 0.04 0.00 0.95 1.49 0.00 1.28 1.23 8.89 2.52 11 480006 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 ER1a ExonRegion 0 4.79 6.81 1.24 0.00 2.37 33.89 11.93 0.78 3.26 0.47 10.56 0.00 2.51 7.74 5.68 6.76 4.59 8.62 6.42 7.74 5.62 3.14 19.66 13 E1_Ab KnownBoundary 0 21.86 27.69 4.49 3.96 7.81 100.96 26.98 6.53 22.71 5.69 14.90 0.00 6.01 16.36 9.27 8.46 13.46 54.80 21.93 19.11 17.36 9.00 38.75 14 ER1b ExonRegion 0 3.46 11.73 3.68 1.93 5.30 35.39 13.64 7.50 21.95 4.13 21.51 1.01 4.02 10.88 5.24 10.75 12.39 29.97 6.81 24.87 19.46 8.50 19.53 15 E1a_E2a KnownJunction 0 0.00 0.00 5.77 3.56 0.00 0.00 4.50 21.52 52.08 13.94 53.59 0.00 0.00 43.73 18.79 45.89 30.67 112.88 65.41 97.35 57.27 24.25 69.83 16 ER2a ExonRegion 1 9.67 36.54 23.79 20.27 35.20 155.14 65.21 68.17 152.91 32.14 84.57 116.52 94.29 48.32 6.52 31.67 52.63 96.76 22.94 123.44 34.36 85.41 55.55 17 E2_Ab KnownBoundary 1 37.34 42.16 30.42 21.74 23.43 261.67 102.99 76.36 158.94 35.65 67.54 201.67 72.88 41.38 4.45 25.21 54.14 133.36 63.91 125.34 40.65 78.50 67.27 18 ER2b ExonRegion 0 23.56 57.89 39.67 27.27 53.20 216.22 86.63 83.52 195.35 50.47 96.21 135.32 122.32 56.00 12.68 41.20 58.27 94.20 31.92 139.16 35.83 112.45 62.72 19 E2a_E3a KnownJunction 0 34.30 46.18 38.41 26.20 84.47 268.54 100.07 80.05 183.42 49.29 96.92 127.09 61.03 50.74 22.99 25.38 67.98 50.32 17.41 102.65 41.39 144.57 61.72 20 ER3a ExonRegion 0 24.39 38.14 43.70 29.64 63.08 241.34 82.80 98.25 214.11 45.63 130.18 130.17 106.94 56.89 19.41 54.86 82.77 128.91 40.29 158.60 53.20 103.29 86.10 21 E3_Da KnownBoundary 0 2.96 2.96 12.89 11.02 0.00 36.74 12.37 22.63 36.31 6.90 5.16 10.80 7.63 9.54 0.00 10.85 7.11 1.70 4.80 8.12 0.00 0.00 0.00 22 E3a_E5a KnownJunction 0 22.82 41.31 41.22 28.60 77.16 289.09 66.16 100.26 233.48 40.10 149.14 94.08 39.93 65.51 19.90 54.69 107.15 184.05 57.41 145.73 59.68 96.20 83.14 23 ER3b ExonRegion 0 2.74 5.82 6.15 5.04 4.97 10.63 17.76 11.59 20.26 6.62 2.75 5.90 6.86 2.91 2.66 3.85 0.89 1.98 2.01 6.13 1.77 1.68 0.87 24 E4_Aa NovelBoundary 0 24.52 15.46 7.72 1.30 8.40 0.00 17.40 11.99 20.43 4.32 0.00 0.00 19.80 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 25 ER4a ExonRegion 0 0.00 4.61 2.07 1.20 1.52 3.00 8.09 4.38 5.20 3.87 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER5a ExonRegion 0 24.24 45.68 39.27 27.02 45.66 240.17 61.82 87.16 199.27 39.37 129.91 70.03 80.45 55.45 19.64 59.02 71.75 182.22 36.19 138.72 68.70 85.86 87.45 28 E5a_E8a KnownJunction 0 28.89 26.57 41.69 31.13 53.74 226.40 68.36 84.41 199.48 35.32 75.28 62.42 80.84 78.05 44.50 56.05 52.83 138.00 62.03 194.63 68.57 73.85 115.33 29 I5_SR4 SilentIntronRegion 0 15.34 5.28 3.74 5.18 7.84 7.65 9.39 5.62 1.57 1.81 0.00 0.00 8.88 0.62 1.35 0.00 2.00 0.38 0.46 4.48 0.00 0.95 0.00 30 I5_SR6 SilentIntronRegion 0 11.32 18.61 1.88 6.26 19.80 5.85 14.43 8.74 10.98 5.80 0.79 0.00 0.88 0.96 0.63 2.75 2.04 3.40 1.97 5.47 0.91 0.00 1.81 31 I5_AR6 ActiveIntronRegion 0 12.61 13.16 3.28 6.64 20.06 8.11 14.17 11.22 8.85 3.94 0.99 2.51 4.97 0.16 0.75 1.52 1.27 2.77 2.04 3.81 0.42 0.80 1.13 32 ER6a ExonRegion 0 11.12 6.10 3.45 1.02 12.54 2.52 7.28 1.29 3.73 2.55 0.00 0.00 0.00 0.00 1.28 1.49 0.00 0.00 0.00 2.13 24.91 12.46 9.70 33 E6_Da NovelBoundary 0 24.15 21.11 2.78 3.60 12.99 0.00 13.56 6.24 7.32 4.19 0.00 0.00 0.00 0.00 0.00 3.59 0.00 5.06 0.00 3.20 0.00 3.12 0.00 34 E6a_E8a KnownJunction 0 3.78 0.00 5.50 0.00 4.24 5.68 0.00 0.00 2.92 0.00 0.00 0.00 0.00 0.00 4.57 0.00 0.00 0.00 0.00 0.00 3.15 0.00 7.94 35 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 5.05 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER8a ExonRegion 0 21.93 48.92 40.05 24.30 40.19 225.32 63.62 77.90 208.01 39.42 92.99 80.24 65.69 63.94 17.21 49.45 61.18 187.69 39.40 127.50 108.75 105.28 107.52 38 E8a_E9a KnownJunction 0 23.41 35.32 35.16 20.71 55.35 279.78 63.46 63.58 186.75 41.02 78.07 32.71 70.94 53.09 35.11 52.72 26.18 170.62 25.13 100.80 109.84 114.26 75.80 39 E8a_E11a KnownJunction 0 0.00 0.00 1.21 1.66 0.00 0.00 1.85 0.00 3.50 0.00 2.21 12.00 0.00 0.00 0.00 0.00 0.00 2.36 3.76 6.20 0.00 0.00 0.00 40 I8_AR2 ActiveIntronRegion 0 45.41 18.38 28.09 10.96 33.57 12.12 21.09 42.40 32.29 6.00 1.04 7.42 11.69 0.36 4.10 2.81 6.24 5.09 4.30 5.74 0.00 3.37 5.55 41 I8_SR4 SilentIntronRegion 0 27.04 15.34 15.57 8.65 17.10 6.97 15.62 24.82 22.27 5.27 1.78 6.57 6.12 1.22 3.13 5.13 5.16 5.83 4.17 4.66 1.91 3.73 6.57 42 E9_Ab NovelBoundary 0 56.16 48.35 51.89 21.34 80.56 231.29 72.16 64.28 209.89 51.09 115.87 62.72 33.28 71.58 34.86 47.77 41.51 174.81 54.59 82.26 103.66 109.67 90.48 43 ER9a ExonRegion 0 31.62 34.32 35.50 19.12 55.69 239.20 55.85 57.69 183.99 45.59 89.70 45.73 47.34 63.70 19.86 49.60 33.22 178.77 38.72 81.52 103.30 103.85 70.30 44 ER9b ExonRegion 0 49.38 80.74 50.95 36.61 49.19 235.82 72.68 72.13 210.04 53.02 114.05 69.69 81.36 68.18 22.52 34.16 59.52 153.37 39.49 122.96 103.59 113.02 94.28 45 E9a_E11a KnownJunction 0 37.41 97.68 71.17 42.39 50.17 231.12 66.07 84.12 222.83 58.34 96.71 82.53 128.24 64.87 19.90 30.85 39.83 135.76 26.17 109.49 80.00 129.75 85.11 46 I9_AR3 ActiveIntronRegion 0 0.00 0.00 7.96 2.84 13.60 9.17 22.51 7.49 10.91 4.59 0.97 0.72 4.69 0.00 0.00 5.94 3.30 0.00 0.00 10.11 0.00 0.00 1.96 47 ER10a ExonRegion 0 2.47 4.64 0.00 0.00 1.53 2.99 4.54 2.95 1.07 0.00 0.02 4.09 2.21 0.00 0.03 0.00 0.00 2.60 0.00 4.90 2.53 0.00 4.98 48 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER11a ExonRegion 0 38.75 83.22 62.21 43.61 49.81 206.80 61.92 77.65 219.00 51.26 85.79 83.26 112.56 63.34 30.13 32.24 54.08 129.06 26.22 124.22 83.57 116.36 80.87 50 ER11b ExonRegion 0 31.42 95.23 59.63 49.66 63.01 279.72 75.13 89.71 229.38 46.43 93.49 98.66 135.61 51.61 24.60 34.24 49.47 105.84 29.97 136.71 61.33 149.72 96.45 51 E11b_E12a KnownJunction 0 48.68 128.73 73.92 44.98 95.25 342.93 92.70 109.96 253.12 50.88 89.13 127.54 184.89 56.57 13.35 76.05 59.09 84.56 31.25 151.48 50.97 223.93 123.44 52 I11_AR2 ActiveIntronRegion 0 12.92 2.68 8.13 5.09 8.03 7.43 15.05 20.92 43.36 7.85 0.00 4.33 0.00 0.00 4.43 0.00 9.90 7.88 0.00 6.49 4.41 1.97 0.00 53 I11_AR3 ActiveIntronRegion 0 5.44 9.88 7.11 4.09 0.76 0.00 9.46 32.99 22.76 4.92 0.00 1.98 4.82 0.00 0.00 1.87 4.15 0.84 0.55 3.53 0.00 0.00 0.00 54 I11_AR4 ActiveIntronRegion 0 6.88 3.36 9.13 7.22 2.94 7.34 7.94 53.58 26.43 9.35 0.00 10.61 5.86 0.00 1.31 5.05 11.39 1.85 3.19 9.68 2.42 0.00 0.00 55 I11_AR5 ActiveIntronRegion 0 6.44 4.86 5.43 6.11 5.75 2.11 9.68 32.26 24.88 9.18 0.00 2.19 6.04 0.00 0.93 1.79 3.43 2.61 3.32 7.14 1.57 1.02 1.44 56 ER12a ExonRegion 0 33.43 83.45 75.30 51.73 121.33 431.17 103.10 135.57 291.84 55.46 134.55 134.06 249.65 97.97 33.01 82.47 64.54 164.24 57.81 175.52 65.96 272.53 142.51 57 E12a_E13a KnownJunction 0 0.00 0.00 7.01 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 14.45 0.00 58 E12a_E14a KnownJunction 0 64.53 61.83 100.65 61.40 120.71 447.24 112.61 125.48 318.46 55.74 196.10 194.91 157.46 97.42 43.64 55.03 92.75 217.17 46.87 189.39 90.19 150.14 162.79 59 ER13a ExonRegion 0 0.00 0.46 6.30 1.80 1.19 2.44 4.85 1.20 5.51 0.00 3.43 5.84 3.43 0.31 0.13 0.00 2.84 2.36 0.00 0.57 0.61 6.41 3.47 60 E13a_E14a KnownJunction 0 0.00 3.35 3.64 0.00 0.00 0.00 4.24 0.00 0.00 0.00 5.11 6.30 0.00 3.00 0.00 0.00 0.00 2.11 0.00 0.00 3.09 5.82 4.10 61 ER14a ExonRegion 0 48.82 72.98 82.73 42.89 61.24 282.67 82.28 122.51 262.82 56.81 121.97 147.54 163.27 54.05 29.69 37.94 65.32 237.13 54.15 163.92 83.03 190.67 124.38 62 E14a_E15a KnownJunction 0 9.78 40.06 43.55 24.81 22.16 205.17 40.14 94.35 195.19 35.16 7.90 0.00 13.64 0.00 0.00 0.00 0.00 182.15 30.87 168.68 42.75 51.37 27.40 63 E14a_E16a NovelJunction 0 0.00 0.00 6.36 6.19 3.74 79.44 4.37 4.11 25.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.08 7.15 6.39 0.00 0.00 0.00 64 E14a_E17a KnownJunction 0 52.23 24.34 39.29 7.19 17.32 78.53 42.93 39.18 72.80 26.81 133.24 182.16 146.26 57.80 15.20 87.84 59.56 36.23 40.75 21.48 70.36 216.28 106.19 65 ER15a ExonRegion 0 12.65 47.73 29.78 20.35 20.56 125.84 29.21 67.04 159.45 26.07 6.44 12.94 16.83 2.79 0.00 1.78 4.00 158.49 31.67 135.49 60.74 54.66 55.31 66 E15_Da NovelBoundary 0 0.00 8.09 0.00 3.86 11.80 20.90 3.93 3.90 22.48 0.00 0.00 0.00 0.00 2.18 0.00 0.00 0.00 45.52 12.80 28.51 5.44 0.00 7.51 67 E15a_E16a KnownJunction 0 3.70 48.48 13.10 9.42 16.47 139.92 18.06 26.41 71.21 7.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.94 31.72 78.36 0.00 0.00 0.00 68 E15a_E17a KnownJunction 0 15.11 2.70 12.51 8.39 17.06 8.29 8.66 16.63 26.48 6.02 7.53 0.00 15.10 2.30 0.00 0.00 0.00 16.71 3.86 0.00 71.97 50.82 63.85 69 I15 Intron 0 1.15 9.91 3.98 6.00 9.29 31.24 16.87 16.97 33.25 4.10 0.84 3.08 5.12 0.46 0.27 1.43 1.26 13.05 3.44 27.78 1.74 2.88 2.35 70 I15_SR1 SilentIntronRegion 0 1.59 14.97 5.08 6.00 6.85 28.54 21.48 20.67 38.72 6.71 0.94 4.38 7.31 0.53 0.62 2.75 1.89 14.44 4.77 42.59 3.01 3.40 2.98 71 I15_AR1 ActiveIntronRegion 0 1.45 5.82 3.36 3.48 8.54 24.29 16.08 16.72 28.29 3.34 0.19 1.82 4.63 0.52 0.40 0.87 3.24 20.17 6.56 30.49 2.81 2.04 2.88 72 E16_Aa NovelBoundary 0 0.00 5.85 9.88 16.18 38.54 169.90 40.67 33.11 69.41 1.21 2.68 0.00 13.47 2.47 0.00 4.36 0.00 37.35 4.80 57.33 10.87 3.12 7.85 73 ER16a ExonRegion 0 5.56 79.67 38.78 39.90 33.38 287.95 18.73 87.50 208.36 28.79 0.00 0.11 0.00 0.16 0.00 0.00 0.00 284.78 40.53 144.10 0.00 0.00 0.15 74 E16a_E17a KnownJunction 0 11.11 154.64 77.79 63.26 61.38 510.22 37.85 164.05 397.48 56.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 433.60 50.82 260.02 0.00 0.00 0.00 75 E17_Aa NovelBoundary 0 19.86 5.79 14.13 8.66 11.21 45.31 24.25 49.29 42.22 9.70 4.79 0.00 0.00 2.12 0.00 0.00 0.00 36.02 0.00 17.71 14.21 22.23 12.21 76 ER17a ExonRegion 0 65.63 109.51 94.99 57.30 87.55 476.16 109.46 181.24 391.40 71.53 138.91 147.77 196.21 76.29 41.37 71.32 74.49 357.21 73.49 222.16 167.67 190.37 145.59 77 E17_Da KnownBoundary 0 58.97 71.30 74.57 41.85 107.22 436.96 144.46 192.76 327.57 57.89 150.09 90.93 170.44 82.70 38.57 79.64 65.64 258.50 52.52 234.64 155.31 186.95 90.66 78 ER17b ExonRegion 0 61.38 65.83 83.54 53.07 112.84 427.54 120.67 233.14 382.57 68.75 197.27 103.04 159.33 77.73 34.82 74.47 79.41 309.47 74.63 210.76 163.89 174.48 100.01 79 E17_Db KnownBoundary 0 31.26 34.53 26.05 19.38 90.58 189.89 63.02 77.63 128.93 25.38 107.08 79.23 34.25 20.66 6.30 35.89 40.21 93.97 70.97 85.65 96.50 74.34 50.19 80 E17_Dc KnownBoundary 1 53.57 49.60 38.26 31.86 73.85 275.13 74.15 112.54 190.59 37.61 122.03 49.67 74.51 49.80 20.89 4.36 43.95 154.99 16.94 95.04 78.02 84.32 41.06 81 ER17c ExonRegion 0 72.67 71.51 99.87 61.33 130.67 446.84 109.23 236.51 404.09 74.36 225.18 145.04 150.86 92.85 31.91 48.54 83.62 315.35 72.20 204.25 164.54 155.22 102.78 82 ER17d ExonRegion 0 63.89 99.21 111.92 63.24 143.17 656.26 142.87 251.48 474.59 88.76 186.65 153.67 186.71 86.50 49.15 68.61 94.53 388.17 77.23 220.66 166.60 194.33 161.45 83 E17_Dd KnownBoundary 1 74.09 87.29 128.50 79.11 100.00 442.42 84.22 320.67 576.85 102.02 193.15 132.04 350.30 112.78 67.87 121.51 123.70 455.16 80.94 207.09 191.70 185.84 204.79 84 ER17e ExonRegion 0 59.94 98.20 89.39 59.43 149.91 493.88 128.10 209.85 402.68 85.82 128.07 114.21 212.31 90.91 39.23 68.00 79.46 271.82 78.10 167.99 110.29 172.92 156.25 85 E17_De KnownBoundary 0 27.78 101.36 45.89 45.58 119.69 339.46 150.77 132.18 277.75 83.67 95.66 126.49 88.79 37.85 13.35 19.99 37.96 105.21 15.34 121.95 63.57 113.40 67.95 86 ER17f ExonRegion 0 68.40 132.98 82.59 75.08 150.39 417.83 109.80 156.50 301.52 65.09 32.28 39.99 45.06 21.20 14.38 16.40 19.77 75.13 31.63 110.62 23.07 114.11 48.66 87 ER17g ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00