Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAS Gene 0 70.41 5.75 12.17 11.55 32.74 9.57 15.37 18.87 20.61 8.37 289.08 344.85 766.69 294.81 280.63 192.08 411.86 5.00 1.82 2.71 116.13 193.77 69.38 2 371875 Transcript 0 2.97 1.87 0.00 1.71 1.84 1.26 1.19 0.59 0.42 0.00 0.47 3.28 0.89 3.40 0.94 1.37 0.00 1.27 0.00 0.49 3.94 0.96 0.67 3 313771 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 350062 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 371857 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 341057 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 352159 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 355740 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 484444 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 357339 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 488877 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 479522 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 494410 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 355279 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 3.74 0.00 0.00 0.00 0.00 0.00 0.00 15 492756 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 460510 Transcript 0 1.09 0.00 0.00 0.00 0.54 0.22 0.16 0.56 0.69 0.00 1.26 0.00 0.55 3.25 4.22 1.56 3.20 0.84 0.00 0.00 2.51 2.81 0.35 17 477270 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 2.47 0.00 4.36 0.00 2.03 0.00 0.00 0.00 0.00 4.35 18 466081 Transcript 0 4.62 0.00 0.00 0.00 1.51 1.70 1.72 0.52 3.05 1.28 28.65 21.84 34.98 13.40 6.30 18.55 29.87 2.49 1.06 0.00 16.03 27.52 10.55 19 494799 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 487314 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.58 0.00 0.00 21 ER1a ExonRegion 0 5.95 3.74 0.00 1.35 3.69 2.53 2.39 1.18 0.85 0.00 0.94 6.55 1.77 1.86 1.88 2.73 0.00 2.53 0.00 0.98 5.28 1.91 1.35 22 E1a_E5a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 2.59 0.00 0.00 23 Ix_AR1 ActiveIntronRegion 0 2.01 0.36 2.38 2.84 3.35 0.33 2.10 1.84 2.31 1.38 8.91 4.34 4.74 9.43 20.00 5.12 8.17 3.35 0.57 1.51 11.11 14.34 20.96 24 E2_Aa NovelBoundary 0 3.41 0.00 4.58 1.23 0.00 0.00 2.12 0.00 5.21 1.53 4.79 10.95 0.00 6.95 27.94 6.75 8.04 0.00 0.00 0.00 22.92 11.33 33.29 25 ER2a ExonRegion 0 4.30 0.00 0.80 0.84 2.91 0.09 1.64 1.33 1.87 0.08 15.60 3.90 2.69 32.82 21.86 22.66 17.29 4.30 0.00 1.18 26.64 9.28 14.77 26 E2_Ab KnownBoundary 0 9.78 0.00 1.24 1.80 12.05 0.00 1.99 1.56 3.50 0.00 12.11 0.00 12.50 18.54 23.98 11.96 26.83 1.91 0.00 0.00 46.33 9.12 12.04 27 E2_Ac KnownBoundary 0 9.93 0.00 1.27 6.39 0.00 7.50 8.74 2.55 3.59 1.67 24.22 7.35 5.68 99.54 18.67 25.38 28.05 10.86 0.00 3.26 118.74 17.70 34.15 28 ER2b ExonRegion 0 8.87 0.00 1.08 4.61 8.64 3.31 4.58 2.13 3.90 1.15 21.71 4.33 4.69 57.91 24.77 19.43 29.45 6.75 0.00 2.13 104.00 13.06 18.52 29 ER2c ExonRegion 1 14.27 0.00 4.34 4.84 10.63 3.77 2.16 4.32 6.41 2.28 118.53 1.05 15.78 156.73 118.83 120.61 243.46 5.62 0.00 1.38 106.52 41.50 36.75 30 E2_Ad KnownBoundary 1 24.15 0.00 7.21 2.06 8.06 0.00 2.25 6.86 7.87 2.95 209.05 0.00 43.83 151.22 139.44 270.27 535.30 3.90 0.00 3.26 76.60 45.44 31.84 31 ER2d ExonRegion 1 8.60 0.00 4.33 2.87 1.25 0.12 0.59 4.38 4.55 2.51 129.46 8.01 22.95 134.28 99.75 173.90 323.28 3.18 0.00 1.04 81.21 30.10 24.99 32 E2_Ae KnownBoundary 0 6.59 0.00 1.48 3.26 0.00 0.00 0.00 2.42 5.24 2.87 114.61 24.16 31.98 175.23 94.20 183.63 312.30 4.48 0.00 0.00 92.05 19.96 26.12 33 ER2e ExonRegion 1 15.62 2.53 4.01 4.13 6.54 7.36 2.88 2.38 9.58 4.23 166.31 11.94 38.28 186.95 116.40 178.49 390.80 2.65 0.43 1.47 207.21 69.83 68.73 34 E2_Af KnownBoundary 1 47.27 2.76 8.75 5.86 16.72 14.88 9.01 5.87 22.25 4.94 355.30 26.56 61.68 435.52 192.22 325.47 831.14 8.29 3.76 0.00 403.78 189.70 188.05 35 ER2f ExonRegion 1 25.23 1.63 7.35 4.03 9.53 8.73 5.56 8.50 17.49 3.44 377.15 53.51 112.56 376.73 187.30 265.35 717.88 3.70 3.19 0.00 346.60 136.35 163.04 36 E2a_E5a KnownJunction 1 16.00 2.83 5.62 3.63 3.23 7.95 5.79 10.35 13.37 2.34 300.76 31.06 131.00 341.28 236.85 467.91 492.94 1.66 0.00 0.00 175.57 92.40 138.29 37 ER2g ExonRegion 1 12.04 2.03 7.23 3.43 2.68 6.58 2.56 9.66 15.72 3.08 335.72 40.31 115.63 334.23 242.40 343.74 540.66 3.12 1.76 0.00 227.06 99.87 146.83 38 E3_Aa NovelBoundary 0 6.59 0.00 4.49 3.40 11.63 4.32 6.23 5.96 2.60 6.66 4.84 6.30 6.82 37.73 106.06 32.13 41.70 14.67 0.00 0.00 339.59 47.03 53.01 39 ER3a ExonRegion 0 1.77 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.77 0.00 3.14 0.00 0.00 1.76 3.09 1.51 1.84 0.00 0.00 0.00 2.06 0.00 0.00 40 E3_Ab KnownBoundary 0 0.00 2.96 8.31 1.43 3.90 0.00 4.24 1.93 0.00 2.77 4.42 0.00 0.00 9.95 4.45 0.00 16.46 0.00 0.00 0.00 71.97 0.00 0.00 41 ER3b ExonRegion 0 0.00 0.54 0.00 0.00 0.91 0.00 0.35 0.10 0.24 0.00 0.84 0.00 0.00 1.83 1.21 2.29 1.22 0.17 0.00 0.00 1.68 0.55 0.32 42 E3_Da KnownBoundary 0 6.15 0.00 1.48 2.06 3.23 0.00 2.25 1.73 1.16 1.53 5.37 0.00 0.00 2.47 4.45 7.52 0.00 2.11 0.00 0.00 9.14 0.00 0.00 43 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 2.47 0.00 4.36 0.00 2.03 0.00 0.00 0.00 0.00 4.35 44 ER3c ExonRegion 0 1.50 0.00 0.00 0.00 0.00 0.65 0.47 1.69 1.30 0.00 0.64 0.00 1.66 2.50 2.90 3.16 3.00 0.86 0.00 0.00 5.46 5.73 1.04 45 E3b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.47 6.68 0.00 4.77 1.66 0.00 0.00 0.00 2.69 0.00 46 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 3.01 2.29 0.00 0.00 1.24 0.93 1.09 5.14 0.00 2.44 0.36 3.72 4.33 1.39 0.00 0.00 7.30 1.04 0.00 47 ER4b ExonRegion 0 1.27 0.00 0.00 0.00 7.49 5.87 3.71 0.35 4.20 1.15 5.41 8.66 0.00 11.04 4.06 10.11 15.84 1.85 0.00 0.00 36.14 25.00 2.94 48 ER4c ExonRegion 0 4.82 0.00 0.23 1.45 4.89 1.99 4.75 3.39 5.88 1.70 18.08 11.31 8.22 12.78 12.76 20.77 38.52 4.06 0.00 1.75 51.84 25.07 10.56 49 E4a_E5a KnownJunction 1 0.00 0.00 1.83 2.06 0.00 2.90 0.00 2.51 6.74 3.95 7.00 6.30 0.00 24.07 5.19 0.00 46.75 2.45 0.00 2.56 27.18 42.62 7.68 50 ER5a ExonRegion 1 19.81 3.27 10.77 6.36 22.78 10.35 12.57 10.65 21.64 4.25 362.17 106.54 163.73 414.22 237.43 333.18 542.86 11.48 0.98 4.31 353.97 167.71 118.70 51 E5a_E6a KnownJunction 0 36.08 0.00 13.28 14.95 18.51 11.30 18.42 12.49 26.48 1.10 311.55 175.56 253.23 441.82 257.37 287.53 495.75 11.52 0.00 5.50 275.71 181.01 170.30 52 E5a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 6.82 4.89 5.32 4.19 4.77 0.00 0.00 0.00 8.83 8.57 11.95 53 ER6a ExonRegion 0 33.33 5.54 13.19 11.86 19.21 16.13 11.85 12.12 27.74 7.14 478.63 225.13 371.57 581.49 309.00 374.16 683.79 12.84 0.72 2.08 345.50 222.66 157.43 54 E6a_E7a KnownJunction 0 46.16 16.38 12.12 16.41 36.50 7.89 14.75 15.77 33.22 9.11 552.19 287.04 399.16 654.66 387.79 413.82 780.18 12.64 4.80 3.26 373.81 241.87 160.14 55 E6a_E8a KnownJunction 0 3.78 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.21 6.30 0.00 7.48 8.90 8.72 7.95 2.57 0.00 3.20 2.84 0.00 0.00 56 ER7a ExonRegion 0 46.39 6.25 13.52 10.74 31.45 16.05 15.55 16.44 27.43 8.58 526.09 313.39 446.63 611.31 316.34 390.74 747.58 10.19 5.06 2.24 310.88 230.26 141.39 57 E7a_E8a KnownJunction 0 68.38 9.67 16.79 12.65 30.56 8.52 26.19 12.90 22.08 15.37 477.70 411.58 645.57 700.46 416.71 631.97 749.51 9.37 0.00 2.88 264.41 329.25 221.94 58 ER8a ExonRegion 0 39.22 1.77 10.91 7.87 17.69 20.38 16.40 16.89 22.39 11.54 476.62 464.16 758.57 692.24 405.47 485.51 745.58 11.06 2.26 3.23 302.05 252.21 174.30 59 E8_Da KnownBoundary 0 22.60 0.00 0.00 0.00 0.00 9.09 11.13 2.55 10.36 3.33 117.98 62.27 123.37 45.97 20.03 79.72 103.13 7.71 3.95 0.00 46.39 98.46 35.51 60 E8a_E9a KnownJunction 0 21.41 0.00 6.00 3.33 15.87 22.60 8.35 12.77 15.71 5.69 340.09 471.90 894.26 531.46 359.60 269.42 826.55 2.36 4.61 5.75 242.66 188.60 136.92 61 E8a_E10a KnownJunction 0 3.33 0.00 3.67 1.37 3.57 0.00 0.00 4.44 7.73 0.00 45.70 0.00 27.27 19.78 25.96 25.04 24.78 0.00 0.00 0.00 34.22 29.45 11.78 62 ER8b ExonRegion 0 9.24 0.00 0.00 0.00 0.00 1.10 3.44 1.04 4.86 1.62 56.22 38.53 69.96 24.36 12.23 33.39 55.40 3.60 2.12 0.00 24.75 54.00 21.09 63 E8_Db NovelBoundary 0 17.26 0.00 1.69 2.06 29.80 2.44 3.36 2.46 7.90 6.04 54.54 87.33 118.66 53.27 5.19 36.57 63.21 3.90 0.00 0.00 40.83 49.05 15.19 64 ER9a ExonRegion 0 25.94 1.65 9.80 2.68 15.29 23.64 10.65 10.48 16.53 6.64 386.52 425.59 782.49 481.74 290.45 209.18 729.76 4.05 1.26 2.74 180.11 148.79 97.75 65 E9a_E10a KnownJunction 0 30.23 0.00 5.53 5.49 14.69 2.16 9.85 10.64 12.24 9.94 310.45 397.18 590.22 535.17 296.31 182.60 609.44 3.90 3.58 2.68 150.12 98.95 75.72 66 E9a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.59 0.00 3.33 3.93 0.00 0.00 0.00 0.00 2.82 0.00 67 I9 Intron 1 13.92 0.69 1.54 2.97 6.32 2.78 6.18 2.17 5.17 1.92 69.13 44.55 92.33 54.62 19.61 33.42 76.66 1.65 0.18 1.32 48.07 42.53 24.61 68 I9_AR1 ActiveIntronRegion 1 10.69 0.94 2.74 1.83 9.03 1.93 7.44 2.80 2.13 2.29 63.44 42.40 109.73 56.72 14.61 30.79 72.67 1.03 0.00 0.80 33.51 36.28 18.92 69 I9_SR1 SilentIntronRegion 1 14.55 0.64 1.33 3.18 5.86 2.95 5.98 2.07 5.73 1.87 70.40 45.10 89.61 54.46 20.58 34.02 77.66 1.77 0.21 1.41 50.83 43.80 25.71 70 ER10a ExonRegion 0 53.45 3.68 9.83 12.43 37.36 11.75 22.92 17.45 22.71 14.66 461.54 534.40 826.35 574.55 389.78 369.94 804.94 3.50 7.18 4.95 197.72 217.06 121.71 71 E10a_E12a KnownJunction 0 80.53 13.09 9.05 9.36 46.77 18.91 36.74 25.88 23.12 13.08 377.73 619.70 972.83 484.67 252.67 341.02 826.46 4.64 3.86 5.37 173.47 207.21 131.46 72 E10a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 3.74 0.00 0.00 0.00 0.00 0.00 0.00 73 ER11a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.58 0.00 0.00 74 I11 Intron 0 7.26 0.62 1.45 1.12 6.06 1.23 3.40 2.84 3.27 1.67 43.31 31.62 58.88 49.67 20.09 25.29 46.68 1.07 0.00 0.39 26.97 31.00 12.77 75 I11_SR1 SilentIntronRegion 0 7.26 0.62 1.46 1.12 6.07 1.23 3.41 2.84 3.27 1.68 43.36 31.66 58.94 49.73 20.12 25.32 46.74 1.07 0.00 0.39 27.01 31.03 12.78 76 ER12a ExonRegion 0 76.79 7.32 8.82 10.85 50.52 23.84 21.55 23.37 30.29 10.41 428.72 632.10 1016.42 573.51 409.89 330.62 743.89 6.21 2.29 1.87 142.10 272.11 118.17 77 E13_Aa NovelBoundary 0 9.19 0.00 2.54 1.66 8.32 0.00 3.89 2.51 11.20 0.00 45.22 23.41 93.01 50.80 10.14 23.24 26.83 0.00 0.00 0.00 5.87 71.52 15.62 78 ER13a ExonRegion 0 102.82 7.72 17.26 9.60 44.40 14.75 21.29 34.06 30.92 13.34 552.26 617.35 1164.75 464.98 365.32 244.38 782.75 7.88 2.57 3.78 187.09 258.89 104.31 79 E13_Da KnownBoundary 0 138.84 9.34 20.19 13.62 31.66 30.95 40.45 41.98 34.29 19.29 494.55 673.42 1372.64 397.14 360.34 245.32 1002.99 9.62 9.22 3.13 141.41 336.42 93.64 80 ER13b ExonRegion 0 92.11 7.21 26.36 19.82 64.86 14.08 32.71 35.10 35.66 12.77 537.09 846.06 1547.27 477.85 419.66 298.85 787.39 7.07 1.59 4.99 139.02 374.38 121.57 81 E13_Db KnownBoundary 1 66.31 2.96 31.55 27.37 85.14 21.41 22.43 21.65 37.62 16.20 506.87 1151.03 1870.82 432.22 328.45 232.93 655.73 6.30 0.00 6.01 70.74 422.88 96.89 82 ER13c ExonRegion 0 75.88 8.39 21.01 22.04 71.71 27.06 28.49 25.35 34.21 18.27 487.47 840.01 1635.56 466.24 442.64 260.55 564.82 4.62 0.21 4.30 65.78 408.79 104.19 83 E13_Dc KnownBoundary 0 131.88 9.34 12.89 18.41 89.73 22.09 29.06 22.22 25.43 21.01 540.77 883.64 1696.15 455.18 585.08 457.32 641.61 6.22 0.00 3.26 79.01 570.51 113.19 84 ER13d ExonRegion 0 96.63 6.91 21.67 19.55 70.95 13.10 20.84 28.40 33.24 22.32 522.43 796.50 1639.77 476.28 554.22 402.34 564.26 4.59 3.19 1.58 71.65 542.13 117.21 85 E13_Dd KnownBoundary 0 78.31 6.05 24.36 16.15 80.81 9.54 19.12 29.66 33.68 16.33 425.32 816.12 2027.79 520.40 646.02 268.31 437.03 0.00 3.58 0.00 51.83 449.21 127.28 86 ER13e ExonRegion 0 94.66 7.87 22.58 24.97 41.21 15.65 28.82 38.06 32.85 20.07 532.77 764.00 1633.66 475.23 582.28 220.40 718.11 7.10 3.27 4.80 100.86 403.99 87.20 87 E13_De KnownBoundary 0 101.94 3.35 22.47 30.07 31.07 5.17 41.34 43.05 25.98 12.14 433.16 693.98 1784.14 500.56 612.77 239.60 598.97 8.54 9.32 0.00 87.72 367.09 76.57 88 ER13f ExonRegion 0 156.35 11.54 18.28 19.22 55.95 9.46 22.28 31.81 29.22 11.51 304.59 456.14 1298.86 293.14 418.78 199.90 394.10 3.76 3.05 3.50 73.38 256.04 59.67 89 ER13g ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 90 IG43_AR1 ActiveIntergenicRegion 0 6.83 1.04 1.65 2.53 4.24 3.32 2.70 1.31 3.02 0.58 17.94 13.93 29.80 19.09 16.78 12.45 36.81 0.78 0.72 0.24 13.22 9.32 7.81 91 IG43_SR2 SilentIntergenicRegion 0 2.71 0.15 0.50 0.80 1.69 0.52 1.85 0.48 0.74 0.29 3.51 5.07 15.95 6.80 6.32 4.86 15.67 0.13 0.12 0.30 4.74 1.86 2.37 92 IG43_AR3 ActiveIntergenicRegion 0 1.41 0.00 0.61 0.00 0.89 0.61 0.88 0.43 0.92 0.00 0.97 5.35 22.21 1.62 3.90 0.50 6.60 0.46 0.53 0.00 1.10 1.74 0.00