Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-574K11.5 Gene 0 31.29 10.61 43.17 22.41 22.78 21.90 12.89 61.71 31.72 25.15 15.23 6.26 6.47 10.86 19.73 14.57 14.11 37.97 18.08 27.65 10.11 17.22 15.43 2 456638 Transcript 0 8.90 3.66 12.97 6.39 10.12 8.23 4.70 23.52 10.78 7.56 4.93 1.76 1.78 3.66 10.52 5.63 4.71 14.01 5.11 8.91 3.37 6.92 4.17 3 ER1a ExonRegion 0 0.18 0.00 0.49 0.00 0.00 0.00 0.07 4.38 1.81 0.00 1.29 0.00 0.00 0.00 0.19 0.00 0.28 0.49 0.05 0.18 0.15 0.00 0.00 4 E1_Da NovelBoundary 0 108.76 46.18 293.63 144.47 101.44 194.72 61.92 224.47 347.22 198.56 171.73 70.37 37.50 158.10 258.61 144.83 121.46 180.74 175.91 154.10 133.69 153.08 241.32 5 E1a_E2a KnownJunction 0 0.00 0.00 1.63 0.00 0.00 0.00 0.00 10.88 5.01 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 6 Ix Intron 0 3.60 0.86 8.54 5.20 7.96 8.57 2.25 8.76 11.73 8.72 12.32 1.52 3.28 7.51 11.31 8.84 12.63 29.67 6.77 20.80 6.56 4.43 13.73 7 Ix_SR1 SilentIntronRegion 0 3.72 1.10 9.18 6.00 9.45 9.34 2.86 10.90 13.15 10.30 13.04 1.93 4.09 8.41 13.89 10.34 15.24 33.63 7.12 24.65 8.37 4.77 16.34 8 Ix Intron 0 6.30 1.51 7.48 6.80 3.98 25.26 8.38 9.59 11.65 8.27 15.11 5.31 6.98 15.58 12.26 5.53 3.69 6.84 8.30 10.30 16.39 6.20 8.75 9 Ix_AR1 ActiveIntronRegion 0 6.40 1.54 7.59 6.91 4.04 25.63 8.50 9.73 11.81 8.39 15.33 5.39 7.09 15.80 12.44 5.61 3.74 6.94 8.42 10.45 16.63 6.30 8.88 10 E2_Aa NovelBoundary 0 2.89 2.63 46.54 14.15 7.98 36.85 7.51 41.65 28.41 16.90 20.22 19.51 0.00 27.96 14.09 19.91 30.95 24.29 9.22 47.49 14.70 2.94 24.16 11 ER2a ExonRegion 0 1.75 2.00 1.12 0.10 9.29 3.54 2.28 4.91 3.25 0.06 2.10 3.19 3.13 6.98 22.34 0.31 8.57 3.57 2.91 5.56 3.83 7.42 7.73 12 E2_Da NovelBoundary 0 14.22 0.00 8.75 13.68 25.04 8.23 10.47 33.89 26.50 14.51 9.95 12.30 13.64 27.02 8.78 8.37 8.60 44.27 8.09 36.56 17.42 15.31 8.02 13 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 Ix Intron 0 6.41 5.13 10.14 3.08 8.11 27.78 15.38 7.80 7.44 9.49 18.54 9.39 7.80 18.19 27.58 12.01 10.00 13.46 22.52 32.23 16.67 15.78 16.31 15 Ix_SR1 SilentIntronRegion 0 6.61 5.23 10.42 3.17 8.30 28.63 15.83 8.04 7.62 9.76 19.07 9.68 8.04 18.74 28.42 12.37 10.31 13.86 23.21 33.22 17.18 16.22 16.78 16 Ix Intron 0 59.43 18.64 19.88 19.78 23.00 43.08 21.24 36.90 34.81 20.57 25.48 8.61 13.75 22.28 32.76 27.25 17.02 25.83 29.21 28.04 26.49 28.65 31.97 17 Ix_AR1 ActiveIntronRegion 0 60.10 18.86 20.11 19.99 23.26 43.57 21.48 37.28 35.19 20.79 25.74 8.71 13.91 22.53 33.13 27.56 17.22 26.08 29.54 28.36 26.80 28.98 32.34 18 Ix Intron 0 40.54 24.38 40.78 36.27 68.86 53.66 37.34 70.23 41.53 21.09 25.45 16.98 12.03 16.85 22.84 15.72 15.13 32.93 26.57 31.00 10.87 21.30 17.94 19 Ix_SR1 SilentIntronRegion 0 43.28 27.99 52.08 45.62 82.03 56.00 44.26 87.06 54.20 27.28 32.87 20.12 15.07 21.65 27.57 19.76 17.74 36.92 35.40 38.06 13.17 25.74 21.69 20 Ix_AR1 ActiveIntronRegion 0 36.30 18.47 21.88 20.68 47.10 50.31 25.91 42.19 20.27 10.72 13.01 11.76 6.96 8.80 15.02 8.97 10.84 26.48 11.74 19.26 7.05 13.94 11.75 21 Ix Intron 0 36.75 11.77 27.08 21.30 39.68 29.18 21.55 54.04 30.62 12.98 13.98 2.58 10.08 8.02 7.41 15.05 13.13 45.87 35.72 21.55 5.58 12.06 21.24 22 Ix_AR1 ActiveIntronRegion 0 17.08 8.72 24.69 20.33 32.38 19.80 17.48 46.76 23.47 8.01 9.01 0.00 8.43 8.18 6.98 10.07 9.96 36.42 20.14 13.67 2.95 13.28 11.15 23 Ix_SR1 SilentIntronRegion 0 52.15 14.26 29.52 22.56 46.06 36.84 25.09 60.71 36.64 16.97 18.00 4.55 11.55 8.10 7.87 19.10 15.80 53.95 48.06 27.87 7.66 11.46 29.22 24 E3_Aa NovelBoundary 0 34.08 0.00 39.21 14.38 21.22 29.64 19.92 26.33 20.78 11.23 20.58 12.45 0.00 7.12 16.07 3.42 21.60 26.78 12.89 27.80 8.46 5.20 12.38 25 ER3a ExonRegion 0 6.52 4.25 13.36 4.56 8.62 8.21 3.98 25.36 9.64 8.79 2.33 1.07 0.97 1.67 5.82 4.06 2.03 15.27 5.06 9.04 1.31 5.65 1.18 26 E3_Da NovelBoundary 0 96.83 46.90 150.82 107.35 111.55 247.87 86.12 191.98 281.36 151.61 141.56 61.22 115.58 113.43 210.40 196.62 135.11 295.98 323.02 129.18 301.47 245.91 288.70 27 E3a_E4a KnownJunction 0 13.11 6.12 18.98 10.75 24.62 18.34 10.16 42.14 15.34 12.09 6.63 0.00 0.00 3.00 21.14 16.24 3.93 29.27 4.61 12.59 5.13 13.78 0.00 28 Ix Intron 0 17.89 7.11 18.63 2.96 14.82 9.62 9.26 15.01 19.85 5.48 7.89 4.16 2.25 6.04 11.34 7.80 11.54 20.88 13.00 14.26 4.48 3.64 11.98 29 Ix_SR1 SilentIntronRegion 0 18.33 7.32 19.12 3.05 15.24 9.90 9.53 15.43 20.42 5.64 8.11 4.18 2.32 6.22 11.61 8.02 11.88 21.47 13.38 14.59 4.61 3.75 12.28 30 E4_Aa NovelBoundary 0 62.97 48.68 120.34 65.66 38.71 135.21 27.78 157.64 210.96 111.05 62.02 40.36 38.63 107.78 93.33 115.35 102.57 211.50 133.09 59.44 167.97 166.07 158.26 31 ER4a ExonRegion 0 40.77 13.25 55.23 29.29 28.30 27.52 16.39 77.00 40.41 31.96 19.93 8.06 8.39 13.96 24.15 18.76 18.18 47.55 23.13 35.00 13.19 21.59 20.26