Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FUT11 Gene 0 18.41 23.77 24.05 17.38 33.09 37.38 27.51 31.26 46.67 21.14 109.16 47.09 31.92 66.23 34.79 28.77 54.58 27.40 21.02 32.32 60.29 75.83 69.89 2 394790 Transcript 0 2.23 2.75 5.29 2.41 13.80 11.76 6.85 8.02 12.05 4.66 21.39 9.03 9.55 18.13 9.34 0.70 5.16 5.57 3.84 12.97 7.19 14.66 9.58 3 372841 Transcript 0 36.14 39.82 51.08 45.58 81.21 86.82 76.09 68.48 97.88 43.73 259.66 131.16 55.36 136.41 61.35 48.59 108.27 28.90 43.67 62.39 67.63 175.17 119.16 4 465695 Transcript 0 3.52 6.88 5.18 2.70 5.29 4.19 6.10 7.20 10.55 2.73 18.57 7.04 11.40 9.75 4.85 4.86 10.31 4.60 2.48 4.97 4.40 12.39 9.69 5 489264 Transcript 0 21.83 22.40 15.35 8.99 22.26 22.93 15.16 17.53 21.69 7.94 30.53 20.61 9.54 23.60 22.03 14.11 9.25 11.75 11.82 11.03 19.32 31.27 28.25 6 462704 Transcript 0 33.63 54.98 34.27 24.45 61.21 43.24 39.72 41.45 56.79 27.59 73.71 48.63 51.79 36.45 27.90 29.56 41.60 16.48 12.02 36.00 30.28 61.06 45.96 7 ER1a ExonRegion 0 1.35 0.00 5.96 2.94 1.00 7.27 1.17 3.94 10.72 6.91 13.89 0.00 4.02 11.59 12.40 10.04 13.53 14.18 11.87 8.97 40.91 17.02 37.38 8 E1_Ab KnownBoundary 0 6.89 0.00 11.97 10.35 0.00 13.12 6.32 8.79 23.35 9.97 46.12 0.00 6.82 19.01 4.45 35.29 39.55 77.77 22.21 27.55 56.96 44.39 176.19 9 ER1b ExonRegion 1 4.26 3.56 10.61 7.11 2.22 13.61 6.41 12.52 28.61 18.57 43.83 3.38 9.48 48.18 24.15 24.88 38.73 39.74 12.35 24.91 84.02 47.32 70.01 10 E1a_E2a KnownJunction 1 10.22 17.17 24.60 5.53 4.33 50.94 18.33 15.57 42.04 16.92 72.07 6.00 0.00 88.18 14.71 39.14 17.11 51.44 11.39 41.03 124.73 82.11 47.38 11 E1a_E2b KnownJunction 0 0.00 8.81 5.56 3.13 0.00 2.90 6.05 6.53 12.38 2.26 21.43 0.00 14.45 9.95 0.00 3.67 13.18 6.43 0.00 3.26 5.25 16.90 11.95 12 E2_Aa NovelBoundary 1 0.00 9.67 1.39 0.00 0.00 0.00 3.58 8.71 1.65 1.16 19.16 0.00 0.00 0.00 0.00 0.00 21.79 0.00 0.00 3.20 2.53 0.00 0.00 13 ER2a ExonRegion 1 5.50 15.46 26.47 9.00 10.17 37.41 21.98 21.09 41.25 17.89 78.48 6.93 1.88 88.35 23.21 39.23 33.67 59.13 14.65 31.06 110.63 64.17 52.27 14 ER2b ExonRegion 0 16.42 26.82 45.04 28.40 40.47 69.15 35.01 59.82 91.10 41.77 271.13 52.89 51.07 159.44 69.51 70.33 148.63 82.72 42.60 76.72 171.97 161.07 187.56 15 E2_Ac KnownBoundary 0 10.22 32.89 42.72 41.12 39.56 55.03 52.69 63.25 98.75 46.15 377.94 130.84 107.14 169.52 53.65 67.93 181.30 62.06 55.53 60.98 206.34 155.59 166.80 16 ER2c ExonRegion 0 15.65 37.04 43.70 28.58 37.54 56.74 36.11 70.08 125.72 49.91 374.34 139.72 100.76 175.80 49.85 59.98 184.75 63.44 51.74 77.24 217.23 139.22 167.57 17 E2_Ad KnownBoundary 1 32.01 33.55 36.37 11.65 36.25 64.22 32.81 54.38 115.59 36.45 294.92 131.74 120.28 173.11 37.70 63.40 154.93 53.43 53.46 86.54 186.14 114.02 154.51 18 ER2d ExonRegion 0 23.80 41.97 41.97 27.70 37.02 75.15 38.23 58.33 103.99 45.73 281.35 103.52 99.05 187.52 77.66 70.00 151.47 85.04 58.52 70.81 229.57 161.68 171.25 19 E2_Da KnownBoundary 0 2.96 3.22 1.83 2.03 15.62 16.81 6.23 3.74 19.99 0.00 4.74 13.95 6.01 4.77 0.00 8.20 13.18 9.70 0.00 3.26 2.84 6.25 7.51 20 E2a_E3a KnownJunction 0 0.00 0.00 4.61 3.50 12.99 11.47 5.79 9.24 13.86 6.74 21.64 6.00 6.82 19.42 6.30 0.00 0.00 7.63 4.42 11.25 5.93 21.55 12.46 21 E2a_E4a KnownJunction 0 39.64 40.32 38.64 16.78 38.46 74.39 87.35 64.40 95.92 35.91 225.58 91.83 41.56 142.15 63.66 57.51 121.83 76.85 62.59 39.44 142.34 158.29 169.02 22 E2a_E6a KnownJunction 0 2.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.53 0.00 0.00 0.00 0.00 0.00 0.00 2.03 3.58 0.00 5.56 0.00 0.00 23 ER2e ExonRegion 0 7.03 4.94 4.81 2.26 10.58 5.48 6.15 7.87 8.71 3.20 15.71 14.08 8.36 9.55 9.69 6.04 7.44 2.77 4.97 6.69 3.54 7.89 7.43 24 E2_Db NovelBoundary 0 23.63 6.18 7.16 7.03 0.00 10.05 12.23 3.82 9.20 3.30 19.16 5.70 23.05 5.00 0.00 10.68 8.88 5.06 4.71 9.33 2.97 5.76 4.01 25 E3_Aa NovelBoundary 0 13.26 6.45 17.33 1.27 7.89 5.05 18.37 13.47 6.19 2.85 7.84 20.26 0.00 14.19 13.35 3.42 7.85 8.21 3.58 6.39 0.00 2.51 7.68 26 ER3a ExonRegion 0 4.45 5.49 5.96 1.32 14.62 12.04 7.92 6.79 10.25 2.58 21.14 12.05 12.28 16.84 12.38 1.41 10.31 3.51 3.25 14.70 8.45 7.78 6.69 27 E3_Da NovelBoundary 0 21.26 16.51 9.08 19.05 3.48 23.45 16.43 6.78 9.55 6.39 20.27 23.41 13.47 26.78 14.96 16.24 18.42 8.17 30.12 16.87 16.87 17.57 7.85 28 E4_Aa NovelBoundary 0 9.78 3.35 3.67 12.95 33.36 16.24 14.31 8.75 23.70 13.89 24.22 18.76 6.66 14.89 16.32 0.00 11.87 9.37 4.61 28.83 12.54 10.72 14.77 29 ER4a ExonRegion 0 27.39 54.88 43.70 26.46 78.15 92.04 72.51 67.89 111.54 44.24 259.07 127.15 115.80 158.95 83.41 63.86 148.05 62.14 56.63 64.89 148.98 172.66 157.07 30 E4_Da KnownBoundary 0 48.97 64.79 59.34 38.32 140.83 121.69 106.87 65.60 113.34 50.37 286.81 135.49 125.64 154.28 133.38 98.86 177.09 57.58 45.93 102.20 144.56 177.21 190.02 31 E4a_E5a KnownJunction 0 11.26 14.73 22.47 12.65 34.89 23.45 22.74 32.74 47.13 25.52 61.07 16.96 29.71 26.25 13.47 31.87 48.81 18.90 13.93 38.03 41.95 16.10 41.40 32 ER4b ExonRegion 0 36.14 39.82 51.08 45.58 81.21 86.82 76.09 68.48 97.88 43.73 259.66 131.16 55.36 136.41 61.35 48.59 108.27 28.90 43.67 62.39 67.63 175.17 119.16 33 E4_Db NovelBoundary 0 21.71 15.33 21.73 8.86 43.04 53.66 47.70 19.35 36.60 21.14 31.96 52.52 48.37 65.69 35.48 8.46 12.44 7.75 20.05 30.87 10.69 147.33 38.50 34 I4_AR4 ActiveIntronRegion 0 2.20 0.00 0.00 0.00 5.46 3.74 4.08 0.00 0.00 0.00 13.89 3.71 34.94 25.62 30.85 0.00 3.37 1.89 0.00 2.17 0.00 6.51 12.11 35 E5_Aa NovelBoundary 0 102.68 74.00 65.46 47.35 84.64 62.86 77.68 67.48 89.24 23.29 127.72 114.34 55.84 102.42 38.20 35.03 103.04 20.48 22.59 40.91 53.25 119.65 143.07 36 ER5a ExonRegion 0 56.00 95.22 46.08 36.25 87.53 63.03 56.69 50.17 66.44 29.65 86.36 80.31 73.88 46.64 42.33 27.24 34.39 14.06 10.11 33.96 18.61 106.02 50.52 37 E5_Da NovelBoundary 0 41.79 21.18 8.34 6.99 81.24 37.08 35.20 9.73 8.36 4.24 20.43 30.46 19.15 7.30 13.72 16.66 14.77 1.62 0.00 5.75 2.53 41.52 11.27 38 I5 Intron 0 54.30 44.37 34.96 25.82 81.15 53.49 46.93 50.29 57.36 23.29 77.11 66.71 26.03 53.54 43.99 32.77 36.65 10.64 20.73 25.25 26.14 111.67 65.66 39 I5_AR1 ActiveIntronRegion 1 75.91 70.70 43.66 32.58 98.40 54.89 54.06 69.74 64.66 20.17 70.88 115.54 29.95 55.27 52.05 37.16 29.88 9.38 20.77 25.99 11.38 162.81 68.54 40 I5_SR1 SilentIntronRegion 0 8.56 14.21 0.94 2.09 3.99 23.41 7.35 5.74 7.40 1.95 24.28 14.05 12.32 34.81 29.72 24.60 16.57 1.36 14.74 6.25 9.61 39.39 25.93 41 I5_AR2 ActiveIntronRegion 1 53.97 37.31 38.89 28.17 91.50 60.60 53.23 50.87 66.27 30.64 94.50 52.71 27.41 57.54 43.21 32.48 45.79 13.78 22.32 29.81 38.87 101.56 74.47 42 E6_Aa NovelBoundary 0 82.76 74.79 49.38 36.06 58.49 81.66 47.96 58.49 74.74 46.79 34.69 17.86 6.82 26.25 13.35 35.63 17.86 23.84 9.04 21.16 28.73 41.03 43.54 43 ER6a ExonRegion 0 40.78 44.79 30.69 17.98 44.51 45.85 30.32 35.05 43.37 15.88 53.53 41.22 19.08 47.21 44.06 28.22 18.50 21.46 20.07 22.07 33.07 62.54 56.49 44 IG39 Intergenic 0 44.98 28.60 31.99 28.56 43.55 35.99 31.61 37.56 49.67 22.68 54.76 29.98 7.64 26.97 23.94 16.94 21.44 11.12 12.11 31.02 16.06 48.95 28.41 45 IG39_AR2 ActiveIntergenicRegion 0 88.70 52.76 60.00 52.03 84.72 68.74 59.40 71.15 99.60 44.38 116.82 61.31 15.53 49.81 42.13 26.39 38.42 18.78 20.22 57.90 33.11 105.47 58.53 46 IG39_AR3 ActiveIntergenicRegion 0 10.49 11.22 11.53 12.11 12.38 11.20 10.96 12.84 10.41 6.08 3.27 4.19 1.38 10.61 10.90 12.43 9.70 6.38 7.35 11.36 2.35 1.85 4.18