Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NDST2 Gene 0 69.26 30.13 41.86 41.76 43.82 67.70 31.61 75.23 93.41 41.02 109.04 42.19 68.66 119.98 123.25 115.78 109.47 85.49 64.49 48.65 80.20 75.86 67.83 2 309979 Transcript 0 10.73 4.33 11.47 9.70 8.26 19.13 9.57 29.12 38.95 15.24 46.34 13.77 17.62 46.65 53.88 58.27 36.75 33.79 18.73 21.66 30.76 27.14 27.11 3 465929 Transcript 0 5.12 0.00 0.53 0.20 0.52 0.53 1.80 0.25 1.78 0.18 0.93 1.03 0.75 1.65 1.35 2.01 2.55 0.36 0.00 0.00 0.86 9.16 4.29 4 299641 Transcript 0 0.88 0.00 0.00 0.00 2.45 5.58 0.11 0.00 0.00 0.00 0.00 2.89 1.56 1.22 0.12 0.74 0.00 1.62 0.00 1.60 2.30 0.09 2.69 5 426473 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 463410 Transcript 0 39.03 8.69 13.53 17.62 18.18 34.65 16.79 27.07 42.39 13.68 23.05 10.45 13.11 30.18 26.32 41.45 25.06 31.78 22.58 22.25 24.47 18.57 29.15 7 429742 Transcript 0 30.31 8.00 21.76 20.01 18.04 17.16 7.57 30.36 23.45 4.97 21.19 14.04 13.17 22.36 23.47 19.28 13.20 26.98 15.68 37.53 11.10 18.40 12.84 8 ER1a ExonRegion 0 15.58 5.86 3.29 2.79 0.00 12.14 3.04 7.05 10.65 3.92 11.84 4.49 3.00 22.11 24.73 22.63 15.26 11.69 9.96 8.03 7.23 16.37 11.40 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 9.41 8.11 16.93 16.60 9.20 17.88 7.65 29.35 54.39 21.43 54.34 11.75 20.23 53.61 54.57 67.34 50.87 49.03 32.95 26.26 36.31 31.93 36.86 11 E2_Da NovelBoundary 0 2.89 0.00 6.36 1.76 4.33 2.84 17.44 5.54 2.95 4.43 13.64 29.41 12.17 17.31 34.98 4.36 4.30 0.00 0.00 5.94 2.84 5.02 3.33 12 E2a_E4c KnownJunction 0 17.93 3.35 25.66 19.41 23.85 46.51 27.60 80.09 90.77 35.62 119.19 38.86 47.24 110.90 136.23 143.12 80.88 74.45 32.00 52.35 79.51 60.25 60.18 13 E3_Aa NovelBoundary 0 6.45 0.00 4.88 0.00 3.23 0.00 16.03 0.00 1.27 2.95 7.84 6.30 19.80 6.95 11.25 6.66 8.60 0.00 4.42 0.00 0.00 6.18 7.00 14 ER3a ExonRegion 0 10.24 0.00 1.06 0.39 1.03 1.06 3.59 0.50 3.56 0.36 1.87 2.07 1.49 3.30 2.70 4.02 5.10 0.71 0.00 0.00 1.71 6.25 4.23 15 E3a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.06 4.35 16 ER4a ExonRegion 0 0.88 0.00 0.00 0.00 2.45 5.58 0.11 0.00 0.00 0.00 0.00 2.89 1.56 1.22 0.12 0.74 0.00 1.62 0.00 1.60 2.30 0.09 2.69 17 ER4b ExonRegion 0 9.52 2.03 12.87 9.54 13.38 26.59 12.58 29.38 40.76 17.20 56.05 19.48 21.11 57.66 65.28 68.36 47.86 46.19 22.30 22.34 42.97 35.42 33.77 18 ER4c ExonRegion 0 28.34 12.65 34.27 24.45 16.92 48.49 19.42 75.71 101.15 43.17 114.17 32.01 41.01 110.80 109.13 112.35 125.08 92.80 80.29 43.88 85.26 90.63 68.35 19 E4_Da KnownBoundary 0 83.42 22.76 22.74 38.86 62.31 49.97 28.22 84.57 130.21 53.70 87.39 42.76 12.66 131.44 117.31 167.56 153.16 85.48 121.79 49.47 73.39 135.75 87.16 20 ER4d ExonRegion 0 39.83 19.86 29.90 30.89 33.05 63.38 28.78 70.34 89.88 43.01 112.85 42.97 56.01 137.96 126.49 114.91 124.47 93.82 73.32 53.93 97.72 73.29 72.56 21 E4_Ad KnownBoundary 0 67.94 31.31 71.29 57.57 64.09 63.09 61.92 106.26 144.07 83.94 195.26 49.22 97.23 166.46 144.88 152.10 216.64 96.50 97.79 67.82 104.34 88.97 90.74 22 ER4e ExonRegion 0 57.81 25.26 50.87 49.90 60.43 99.34 46.64 105.58 132.24 70.45 166.88 69.98 103.62 167.01 144.36 143.94 160.73 126.89 85.25 73.27 100.66 87.70 86.00 23 E4b_E5a KnownJunction 0 66.53 37.95 72.77 61.56 60.87 95.63 57.23 127.21 168.66 70.11 169.10 133.39 179.21 200.25 240.81 200.37 220.66 165.65 134.40 130.97 132.88 133.73 114.98 24 ER5a ExonRegion 0 49.06 34.25 49.99 47.67 58.93 73.81 32.21 110.17 141.11 56.16 180.18 64.30 114.05 192.40 168.21 173.43 186.99 129.15 81.88 88.20 114.54 117.81 119.73 25 E5_Da KnownBoundary 0 49.27 17.30 12.68 13.02 24.19 31.46 22.79 29.90 40.42 16.39 37.75 12.00 26.62 43.79 46.11 35.72 42.45 17.53 29.65 43.27 25.70 21.13 31.76 26 E5a_E6a KnownJunction 0 31.19 30.65 43.26 36.06 26.32 54.29 8.39 69.17 68.60 42.82 123.29 18.46 58.28 126.14 116.82 140.13 119.21 83.20 91.30 47.68 67.40 85.67 62.40 27 ER5b ExonRegion 0 28.34 13.84 14.82 13.13 12.66 27.91 16.86 38.62 36.63 19.05 39.79 9.93 17.27 33.04 25.76 32.55 30.19 29.29 21.68 32.43 14.67 15.19 26.00 28 E5_Db KnownBoundary 0 46.75 18.02 16.56 16.48 17.91 27.09 25.22 40.13 31.80 18.32 34.01 11.25 21.10 41.03 22.87 54.17 23.56 33.66 26.26 22.95 16.56 19.47 28.77 29 ER5c ExonRegion 0 39.03 8.69 13.53 17.62 18.18 34.65 16.79 27.07 42.39 13.68 23.05 10.45 13.11 30.18 26.32 41.45 25.06 31.78 22.58 22.25 24.47 18.57 29.15 30 E5_Dc NovelBoundary 0 78.38 11.18 15.61 22.44 49.58 53.66 18.50 36.56 61.86 13.43 22.90 12.45 39.12 56.21 18.30 61.44 59.00 52.31 38.97 35.47 35.27 37.17 31.41 31 E6_Aa NovelBoundary 0 76.53 19.01 19.72 25.17 16.30 27.14 21.37 36.80 82.03 17.27 17.53 0.00 19.80 28.31 29.92 35.80 25.15 43.90 58.07 25.82 40.71 19.66 19.55 32 ER6a ExonRegion 0 53.69 23.39 36.35 37.86 43.16 63.75 27.15 81.37 109.41 49.77 149.21 65.72 90.93 140.63 148.77 154.49 142.56 112.92 89.03 61.54 105.10 107.08 84.50 33 E6_Da NovelBoundary 0 38.53 2.89 3.40 4.49 0.00 4.94 6.05 29.41 35.62 7.28 16.37 17.71 6.01 12.48 13.97 16.32 30.29 21.85 31.06 21.73 31.57 26.15 19.89 34 E6a_E7a KnownJunction 0 109.28 22.30 45.74 40.75 39.05 97.78 45.44 86.26 124.85 63.88 150.99 75.47 53.24 168.05 137.96 164.66 169.33 108.36 63.06 80.66 105.27 132.88 129.58 35 I6 Intron 0 16.61 2.85 2.05 3.98 6.75 12.33 8.53 8.66 18.57 4.31 11.37 3.85 16.31 15.13 18.51 20.82 13.87 14.93 9.82 8.35 19.76 15.18 17.28 36 I6_SR1 SilentIntronRegion 0 18.84 2.95 4.12 6.58 11.64 17.26 8.82 15.38 27.98 4.53 16.62 1.14 16.83 17.80 22.30 28.46 18.94 22.87 14.02 8.83 27.16 22.92 22.50 37 I6_AR2 ActiveIntronRegion 0 19.47 3.20 0.56 1.38 3.92 10.66 10.75 4.10 12.63 4.91 8.45 6.81 21.20 15.70 18.61 17.75 11.62 10.13 6.24 9.19 17.48 11.17 15.00 38 E7_Aa NovelBoundary 0 29.93 8.62 7.92 13.09 12.31 28.96 2.03 10.27 35.21 13.14 11.95 6.30 13.47 19.78 9.89 19.05 26.65 15.84 32.19 8.44 11.49 19.23 7.60 39 ER7a ExonRegion 0 70.93 23.67 49.37 31.23 38.21 82.11 29.64 71.56 106.92 55.69 113.37 37.45 64.25 136.81 131.24 142.87 119.63 111.17 64.63 46.52 84.82 86.29 85.72 40 E7a_E8a KnownJunction 0 89.20 40.98 67.74 41.45 46.43 88.81 35.20 71.88 85.94 55.44 117.98 18.01 26.46 166.52 153.78 180.64 145.30 100.73 45.37 76.19 95.38 125.71 95.44 41 ER8a ExonRegion 0 127.96 52.24 53.07 43.77 51.07 94.25 40.30 106.70 121.93 51.33 129.50 37.96 82.57 162.15 150.48 162.50 153.04 120.96 63.66 66.77 118.59 105.48 89.28 42 E8a_E9a KnownJunction 0 88.09 76.89 56.74 62.13 81.15 164.91 84.62 125.15 122.86 59.53 183.68 68.42 93.66 175.88 211.76 154.83 170.45 126.43 85.46 54.01 142.27 78.50 110.97 43 E9_Aa NovelBoundary 0 2.89 0.00 3.34 2.06 20.03 5.11 5.56 6.61 3.10 0.00 9.00 0.00 20.13 2.47 8.90 3.93 25.99 3.94 12.05 8.18 3.15 5.14 0.00 44 ER9a ExonRegion 0 93.38 41.43 52.64 62.95 59.82 109.96 49.99 127.29 148.60 56.15 176.46 89.71 173.15 207.09 190.99 202.82 164.61 140.87 94.62 61.69 124.56 129.25 137.38 45 E9_Da NovelBoundary 1 0.00 2.96 4.52 11.55 4.33 9.54 0.00 5.63 16.49 7.49 4.32 18.76 42.37 14.95 5.19 31.53 18.05 37.68 22.49 26.33 5.99 7.90 7.43 46 E9a_E10a KnownJunction 1 110.09 14.54 71.40 88.80 66.64 99.49 45.53 180.68 186.40 71.61 230.37 129.64 300.95 330.33 407.32 276.51 233.29 116.32 170.64 81.05 168.84 174.76 206.49 47 E10_Aa NovelBoundary 0 28.08 3.35 8.57 12.62 3.65 11.30 2.25 18.11 9.66 4.92 10.84 18.31 6.82 12.01 22.25 21.19 17.86 16.58 26.64 5.56 5.25 16.53 17.67 48 ER10a ExonRegion 0 100.28 48.68 55.03 89.26 65.54 100.35 45.60 144.69 181.79 69.29 230.89 118.86 244.41 215.99 183.47 226.46 216.84 122.87 128.17 61.24 165.91 154.52 136.08 49 E10_Da NovelBoundary 0 17.11 5.33 1.83 19.74 84.47 47.47 21.07 28.75 19.01 6.23 4.95 5.40 0.00 9.65 0.00 11.28 13.46 25.49 9.51 15.53 3.03 3.12 3.93 50 E10a_E11a KnownJunction 0 146.91 59.92 51.95 74.22 44.74 102.90 48.36 177.73 196.64 69.95 196.47 158.90 233.75 228.09 179.25 177.56 170.92 117.98 88.47 54.71 129.61 116.65 116.26 51 I10 Intron 0 26.45 13.85 5.33 8.18 11.51 13.76 12.33 11.45 9.46 4.51 5.37 7.11 17.48 8.06 12.40 14.86 10.09 4.98 15.06 11.24 7.66 9.84 11.02 52 I10_AR1 ActiveIntronRegion 0 38.92 12.43 0.99 2.65 8.54 9.82 10.24 4.89 3.97 1.31 3.04 5.04 9.90 6.95 6.99 6.21 6.15 3.74 10.39 2.31 2.99 6.17 9.56 53 I10_SR1 SilentIntronRegion 0 14.40 16.18 10.65 15.25 15.76 19.50 15.69 19.56 16.60 8.50 8.50 9.61 27.25 10.06 19.74 25.37 15.34 6.46 21.37 22.17 13.44 14.69 13.39 54 E11_Aa NovelBoundary 1 196.78 54.20 21.29 28.43 29.63 31.35 33.78 49.00 54.77 14.34 8.00 12.30 33.76 18.95 31.15 48.45 46.56 25.37 41.60 37.20 17.05 20.88 12.38 55 ER11a ExonRegion 0 209.98 96.05 70.50 97.08 109.49 161.97 62.12 159.39 180.77 70.72 227.72 123.11 266.05 231.99 233.76 243.14 226.72 140.38 147.17 83.63 171.89 152.11 138.28 56 E11_Da NovelBoundary 0 36.90 2.50 20.99 14.08 20.63 8.12 16.96 42.88 40.57 11.07 12.79 24.76 19.80 37.14 29.92 41.01 27.30 29.39 17.41 13.42 13.90 21.62 11.27 57 E11a_E12a KnownJunction 1 114.84 71.96 62.21 97.09 85.48 134.58 32.81 127.78 110.36 63.72 132.88 82.08 215.89 157.04 164.41 179.87 129.13 109.64 104.19 52.35 90.57 135.45 49.51 58 I11 Intron 0 38.23 5.75 5.82 6.47 12.32 21.43 11.25 14.60 18.90 4.84 14.38 15.96 34.69 21.62 18.56 23.16 22.21 12.38 14.67 9.80 17.17 14.76 11.44 59 I11_AR1 ActiveIntronRegion 0 38.77 5.83 5.89 6.56 12.49 21.72 11.41 14.80 19.16 4.91 14.55 16.19 35.18 21.93 18.82 23.42 22.53 12.56 14.83 9.93 17.40 14.97 11.60 60 E12_Aa NovelBoundary 0 13.19 6.18 13.72 11.05 4.24 36.29 26.72 15.85 19.27 2.39 24.90 11.85 40.91 25.31 29.92 15.47 25.99 12.56 17.88 20.65 20.45 8.70 19.38 61 ER12a ExonRegion 0 122.09 47.85 67.56 66.21 71.16 99.85 50.63 103.90 96.90 51.54 139.44 83.35 151.90 159.99 162.19 149.80 137.26 106.77 82.13 57.24 94.71 92.63 69.51 62 E12a_E13a KnownJunction 0 129.13 60.58 107.89 81.74 90.66 97.16 52.51 143.02 134.37 70.41 141.25 49.37 115.74 143.86 170.72 131.85 190.09 101.44 41.13 67.88 83.03 95.77 63.00 63 I12 Intron 0 14.87 0.00 4.75 1.59 9.75 6.68 3.44 4.69 7.18 0.44 9.05 7.29 4.24 7.08 11.10 12.37 10.31 7.89 11.60 2.77 6.30 5.96 9.17 64 I12_SR1 SilentIntronRegion 0 19.90 0.00 6.78 2.45 13.44 7.94 4.04 6.74 10.46 0.69 12.57 10.81 5.83 9.44 15.37 16.43 14.95 10.42 17.63 3.94 8.29 8.81 12.72 65 E13_Aa NovelBoundary 1 20.30 0.00 3.40 8.72 3.90 7.78 4.06 13.27 9.69 4.38 6.95 12.60 30.03 4.53 22.25 11.96 22.25 14.88 8.75 9.59 11.49 2.57 8.54 66 E13_Ab NovelBoundary 0 92.24 45.91 79.15 37.56 71.90 65.36 31.40 87.16 110.30 40.51 108.71 66.47 74.02 103.71 143.77 98.78 124.73 99.70 72.47 67.62 83.28 51.74 40.63 67 ER13a ExonRegion 0 114.29 49.57 97.42 70.36 78.93 97.54 39.14 119.48 137.33 65.73 142.31 64.67 115.79 147.49 162.11 122.04 175.36 124.38 64.50 73.80 92.14 85.55 54.69 68 ER13b ExonRegion 0 163.87 67.30 105.36 94.71 94.67 128.27 46.46 120.10 150.48 68.85 180.63 49.94 106.42 168.08 205.05 188.80 172.39 151.81 107.81 81.59 103.99 101.74 91.28 69 E13a_E14a KnownJunction 0 113.28 69.13 79.42 59.47 82.51 118.85 37.89 74.51 111.78 33.17 99.55 30.61 67.53 150.22 164.29 90.92 120.34 63.55 53.84 84.37 47.51 74.40 73.67 70 ER14a ExonRegion 0 123.57 49.97 76.01 69.53 69.45 116.98 41.67 96.07 111.88 39.74 138.10 47.94 77.51 156.06 179.61 138.61 133.78 96.67 73.44 65.84 92.48 82.96 72.35 71 E14_Da NovelBoundary 0 27.34 19.21 30.42 31.50 28.18 24.19 4.42 14.70 41.61 9.13 27.01 7.65 0.00 21.84 36.59 10.94 21.04 27.07 32.75 9.40 16.49 9.25 26.89 72 E14a_E15a KnownJunction 0 114.02 34.01 68.51 66.72 72.84 73.99 30.74 79.72 77.05 37.61 100.03 49.52 80.19 139.62 148.34 118.94 99.11 48.00 23.15 29.79 52.14 63.93 56.00 73 I14 Intron 0 38.75 12.76 21.49 16.47 12.60 13.43 9.70 26.95 23.59 7.15 20.73 6.53 8.30 12.00 15.22 18.66 18.99 21.14 23.33 18.92 16.70 10.35 15.36 74 I14_AR1 ActiveIntronRegion 0 39.14 12.90 21.71 16.63 12.73 13.57 9.80 27.22 23.83 7.22 20.93 6.60 8.38 12.12 15.38 18.85 19.19 21.35 23.57 19.12 16.86 10.46 15.52 75 E15_Aa NovelBoundary 0 39.41 36.64 21.02 31.06 39.05 37.93 24.73 51.22 36.63 19.53 9.32 12.60 32.63 28.67 41.04 28.28 22.72 35.69 40.85 32.92 19.40 8.76 15.96 76 ER15a ExonRegion 0 140.22 52.40 80.60 91.00 76.82 104.42 63.86 102.57 139.69 43.43 131.79 55.32 75.77 160.54 203.82 147.25 128.38 99.42 66.80 56.95 91.68 94.95 85.39 77 E15_Da KnownBoundary 0 69.42 11.64 46.80 37.56 10.36 30.27 24.25 64.40 54.74 12.11 40.96 5.85 15.10 27.49 39.19 43.75 17.02 45.35 8.66 36.11 14.46 20.33 19.38 78 E15a_E16a KnownJunction 1 121.43 50.12 39.77 52.97 67.32 107.67 51.71 88.27 110.56 26.03 142.67 37.21 20.45 133.38 204.83 128.60 113.32 54.01 44.99 30.17 75.06 73.11 87.50 79 ER15b ExonRegion 0 30.31 8.00 21.76 20.01 18.04 17.16 7.57 30.36 23.45 4.97 21.19 14.04 13.17 22.36 23.47 19.28 13.20 26.98 15.68 37.53 11.10 18.40 12.84 80 E15_Db NovelBoundary 1 51.86 32.89 42.58 42.19 39.90 25.27 38.42 48.39 33.48 26.38 58.91 0.00 61.36 22.54 14.09 32.64 17.39 62.22 35.95 23.52 17.24 23.76 19.55 81 E16_Aa NovelBoundary 0 36.52 28.68 32.85 31.13 63.75 17.89 22.52 28.79 29.75 17.46 12.32 25.21 32.79 37.79 22.25 32.38 13.74 18.28 8.56 30.55 14.09 17.15 15.45 82 ER16a ExonRegion 0 89.81 42.90 51.38 49.96 59.06 58.40 37.81 70.09 83.52 37.57 84.05 20.43 25.39 87.66 125.60 90.21 69.81 59.61 46.50 41.41 56.07 68.78 48.04 83 IG41 Intergenic 0 3.69 0.89 7.96 2.66 22.16 9.59 11.54 10.10 12.03 5.96 10.11 6.55 1.68 7.29 8.70 5.18 1.44 16.82 8.33 14.84 1.92 5.45 6.40 84 IG41_SR1 SilentIntergenicRegion 0 3.86 0.93 8.30 2.77 23.15 10.02 11.93 10.56 12.55 6.19 10.54 6.84 1.76 7.61 9.01 5.41 1.50 17.55 8.70 15.50 2.01 5.69 6.69