Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TYSND1 Gene 0 33.86 20.62 22.83 13.11 17.13 21.53 10.40 20.15 16.97 7.30 30.77 14.14 17.71 74.94 66.39 40.56 37.54 40.44 24.99 22.45 27.03 17.68 26.78 2 479086 Transcript 0 0.00 0.00 0.00 0.00 0.06 0.31 0.00 0.00 0.00 1.82 0.05 0.00 0.00 2.32 9.10 4.64 1.02 2.11 2.96 0.46 0.89 0.25 0.28 3 335494 Transcript 0 3.26 2.96 1.12 0.00 7.13 0.00 0.00 1.89 1.50 0.00 2.21 0.00 0.00 12.54 22.13 12.22 8.32 2.57 8.56 0.00 0.00 0.00 0.00 4 287078 Transcript 0 6.67 11.84 13.01 3.00 0.00 7.67 0.00 19.63 3.47 9.86 29.17 6.45 12.82 71.40 55.63 27.34 27.02 21.22 18.54 13.74 27.68 15.06 8.19 5 494143 Transcript 0 34.98 14.81 9.66 10.02 19.93 16.95 10.50 17.30 17.48 5.06 24.12 22.86 27.01 60.90 35.19 36.71 27.37 43.85 21.50 18.80 21.42 17.35 28.05 6 IG42 Intergenic 0 9.06 8.01 9.29 7.62 16.94 16.22 9.94 20.53 12.62 6.52 2.40 5.84 5.33 4.85 4.50 3.60 2.05 3.81 8.99 7.92 5.60 10.28 10.38 7 IG42_SR1 SilentIntergenicRegion 0 9.43 8.34 9.66 7.93 17.63 16.75 10.29 21.26 13.08 6.78 2.50 6.08 5.55 4.94 4.61 3.70 2.13 3.97 9.13 8.24 5.79 10.63 10.81 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.13 0.61 0.00 0.00 0.00 1.97 0.09 0.00 0.00 4.64 8.57 5.10 2.04 4.22 5.92 0.91 1.78 0.50 0.56 9 ER1b ExonRegion 0 6.17 1.48 2.96 3.70 12.61 12.55 6.43 3.73 6.85 3.93 17.45 1.86 0.00 51.60 44.55 54.18 45.60 34.58 24.66 13.86 16.15 23.31 36.08 10 E1_Ac KnownBoundary 0 3.04 0.00 3.96 12.29 16.38 11.02 8.21 6.82 9.26 4.49 27.06 6.00 0.00 68.99 32.88 37.34 35.16 44.02 31.62 12.34 19.77 12.31 24.50 11 ER1c ExonRegion 0 0.76 0.00 9.09 4.63 6.46 2.59 4.25 5.35 4.85 3.35 19.29 4.90 0.00 25.19 26.06 17.94 18.44 22.77 19.89 8.07 13.97 10.10 13.35 12 E1_Da KnownBoundary 0 3.70 0.00 11.06 0.00 0.00 2.78 0.00 5.05 6.77 1.07 15.21 0.00 0.00 16.42 9.27 19.65 20.20 25.95 3.48 9.27 0.00 3.12 15.79 13 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 9.64 4.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1d ExonRegion 0 4.30 1.78 12.87 4.59 3.24 6.80 3.09 8.91 8.84 6.16 28.31 5.19 4.83 74.50 48.76 30.47 30.47 29.56 14.98 14.93 21.28 8.82 18.55 15 E1_Db NovelBoundary 0 19.41 8.88 16.56 2.00 8.40 13.29 2.25 12.57 9.87 0.00 24.74 18.91 0.00 46.27 14.96 25.21 37.40 24.75 16.57 9.46 16.87 3.12 28.34 16 E1b_E2b KnownJunction 0 6.67 11.84 13.01 3.00 0.00 7.67 0.00 19.63 3.47 9.86 29.17 6.45 12.82 71.40 55.63 27.34 27.02 21.22 18.54 13.74 27.68 15.06 8.19 17 E1b_E4a KnownJunction 0 3.26 2.96 1.12 0.00 7.13 0.00 0.00 1.89 1.50 0.00 2.21 0.00 0.00 12.54 22.13 12.22 8.32 2.57 8.56 0.00 0.00 0.00 0.00 18 I1 Intron 1 21.77 11.17 10.35 6.55 16.10 11.99 6.12 21.33 13.48 7.75 37.07 12.14 15.18 65.82 39.84 34.98 27.34 41.72 23.60 17.62 25.54 18.35 29.95 19 I1_AR1 ActiveIntronRegion 1 21.85 11.21 10.38 6.57 16.15 12.03 6.14 21.40 13.52 7.77 37.20 12.19 15.23 66.04 39.98 35.10 27.43 41.86 23.69 17.68 25.63 18.41 30.05 20 E2_Aa NovelBoundary 0 50.31 12.50 17.53 17.58 15.79 10.73 6.58 29.98 18.58 9.80 31.17 30.16 46.91 66.22 41.78 34.69 58.25 51.86 26.82 40.97 30.52 19.23 33.29 21 ER2a ExonRegion 0 34.98 14.81 9.66 10.02 19.93 16.95 10.50 17.30 17.48 5.06 24.12 22.86 27.01 60.90 35.19 36.71 27.37 43.85 21.50 18.80 21.42 17.35 28.05 22 E2_Ab KnownBoundary 0 54.23 6.51 9.61 7.79 11.29 24.02 4.28 15.77 15.71 3.25 20.11 22.66 26.30 41.44 42.03 57.42 32.91 52.73 17.13 14.45 42.87 16.04 48.57 23 ER2b ExonRegion 0 45.05 15.03 27.28 16.65 16.67 44.14 10.85 23.75 17.17 11.85 54.05 27.68 51.19 165.57 132.79 71.13 90.85 76.65 47.88 40.33 45.09 31.20 45.04 24 E2_Da NovelBoundary 0 20.37 8.62 7.07 1.56 3.82 2.90 12.19 1.89 3.10 0.00 4.53 18.46 6.82 18.01 10.14 11.54 9.07 18.53 23.25 0.00 19.89 3.12 11.95 25 E2a_E3a KnownJunction 0 25.71 5.59 22.59 3.33 8.49 26.12 8.13 26.62 11.40 10.88 56.07 37.81 18.83 139.21 121.76 57.42 70.69 64.63 13.18 30.81 41.02 29.88 29.28 26 I2 Intron 0 6.94 4.45 2.36 2.42 3.99 4.01 3.95 1.54 6.22 0.85 5.00 5.42 7.08 21.22 5.28 10.93 6.24 15.62 5.38 9.10 10.08 5.18 7.01 27 I2_SR1 SilentIntronRegion 0 6.97 4.47 2.37 2.43 4.01 4.02 3.96 1.54 6.25 0.85 5.02 5.44 7.10 21.30 5.30 10.98 6.26 15.68 5.40 9.12 10.12 5.20 7.03 28 E3_Aa NovelBoundary 0 7.26 2.43 3.43 6.19 4.33 0.00 4.50 0.00 6.25 3.63 4.32 0.00 0.00 6.83 5.19 25.04 4.30 26.41 16.47 5.75 0.00 0.00 11.69 29 ER3a ExonRegion 0 51.31 14.57 36.19 12.48 19.75 29.85 11.19 17.94 19.48 9.71 61.17 18.39 29.63 129.22 126.88 60.27 88.89 60.33 34.17 31.45 45.63 24.13 37.04 30 E3_Da NovelBoundary 0 0.00 2.96 0.00 5.13 8.06 13.29 2.25 1.60 4.40 3.95 2.68 0.00 0.00 12.18 8.90 15.30 4.77 6.30 8.66 0.00 5.31 2.63 16.99 31 E3a_E4a KnownJunction 0 159.58 57.36 37.46 14.88 39.22 47.02 37.63 17.74 13.25 11.15 64.91 60.77 66.88 179.65 158.60 94.76 75.92 74.78 47.25 57.08 42.81 25.84 55.74 32 I3_AR1 ActiveIntronRegion 0 17.35 8.03 5.54 7.40 6.50 8.35 7.64 8.60 5.03 5.19 5.28 5.41 5.22 16.36 18.17 7.22 15.03 12.26 10.62 5.17 6.69 5.06 12.48 33 E4_Aa NovelBoundary 1 202.18 43.48 25.10 9.99 23.17 25.38 21.46 20.33 6.25 7.41 11.58 5.40 46.75 42.32 75.65 12.05 29.45 24.58 32.19 15.53 23.10 5.39 29.88 34 ER4a ExonRegion 0 48.53 34.85 33.04 19.24 23.55 29.84 14.42 28.15 21.52 8.56 31.72 14.85 18.79 73.39 81.08 44.25 38.20 41.80 29.71 26.79 30.49 21.20 28.84 35 ER4b ExonRegion 0 2.12 1.02 0.00 0.00 0.00 1.83 1.32 0.86 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.06 0.00 0.00 0.00